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1VHV

Crystal structure of diphthine synthase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 32-ID
Synchrotron siteAPS
Beamline32-ID
Detector technologyCCD
DetectorMARRESEARCH
Wavelength(s)0.9795
Spacegroup nameP 1 21 1
Unit cell lengths50.892, 56.416, 101.144
Unit cell angles90.00, 100.78, 90.00
Refinement procedure
Resolution28.060 - 1.750
Rwork0.211
R-free0.25400
Structure solution methodSe-Met SAD phasing
RMSD bond length0.016
RMSD bond angle2.500

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Data reduction softwareMOSFLM
Data scaling softwareSCALA
Refinement softwareREFMAC (4.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]28.0601.840
High resolution limit [Å]1.7501.750
Rmerge0.0840.688
Number of reflections54760
<I/σ(I)>11.42.1
Completeness [%]95.678.6
Redundancy74.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

7.5

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Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropHEPES10 (mM)pH7.5
21drop150 (mM)
31dropmethionine10 (mM)
41dropglycerol10 (%)
51dropdithiothreitol5 (mM)
61dropprotein10 (mg/ml)

221051

PDB entries from 2024-06-12

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