Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1Q52

Crystal Structure of Mycobacterium tuberculosis MenB, a Key Enzyme in Vitamin K2 Biosynthesis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X26C
Synchrotron siteNSLS
BeamlineX26C
Temperature [K]100
Detector technologyCCD
Collection date2002-08-10
DetectorADSC QUANTUM 4
Wavelength(s)1.1
Spacegroup nameP 1 21 1
Unit cell lengths90.375, 139.432, 142.027
Unit cell angles90.00, 97.29, 90.00
Refinement procedure
Resolution50.000 - 1.800
R-factor0.19749
Rwork0.195
R-free0.21800

*

Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.018

*

RMSD bond angle1.600

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareBEAST
Refinement softwareREFMAC (5.1.24)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.000
High resolution limit [Å]1.800
Rmerge0.073

*

0.506

*

Total number of observations1210072

*

Number of reflections312176
Completeness [%]97.9

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5295dioxane, ammonium sulfate, MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirdioxane0.5-2 (%)
21reservoirammonium sulfate1.2-1.3 (M)
31reservoirMES0.1 (M)pH6.5

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon