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1P61

Structure of human dCK complexed with 2'-Deoxycytidine and ADP, P 43 21 2 space group

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 14-BM-D
Synchrotron siteAPS
Beamline14-BM-D
Temperature [K]110
Detector technologyCCD
Collection date2001-03-21
DetectorMARRESEARCH
Wavelength(s)0.9552
Spacegroup nameP 43 21 2
Unit cell lengths80.001, 80.001, 93.946
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 2.200

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R-factor0.22733
Rwork0.222
R-free0.28000

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Structure solution methodMAD
RMSD bond length0.021
RMSD bond angle1.885
Refinement softwareREFMAC (5.1.24)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.300
High resolution limit [Å]2.2002.200
Rmerge0.064

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0.156

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Total number of observations219344

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Number of reflections15406

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<I/σ(I)>28.27.5
Completeness [%]95.9

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78.2

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Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.520

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0.95-1.0M citrate trisodium dihydrate, 100mM Hepes, 5mM deoxycytidine, 5mM ADP, 5mM MgCl2, 5mM DTT, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropenzyme12 (mg/ml)
21drop5 (mM)
31dropHEPES20 (mM)pH7.5
41dropdithiothreitol5 (mM)
51dropdeoxycytidine100000 (nM)
61reservoirtrisodium citrate dihydrate0.95-1.0 (M)
71reservoirHEPES100 (mM)pH7.5

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PDB entries from 2024-05-15

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