Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1NVP

HUMAN TFIIA/TBP/DNA COMPLEX

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsEMBL/DESY, HAMBURG BEAMLINE X11
Synchrotron siteEMBL/DESY, HAMBURG
BeamlineX11
Temperature [K]110
Detector technologyIMAGE PLATE
Collection date1997-03-21
DetectorMARRESEARCH
Wavelength(s)0.916, 0.909
Spacegroup nameP 21 21 21
Unit cell lengths59.624, 90.884, 125.256
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution40.000

*

- 2.100
R-factor0.229
Rwork0.229
R-free0.24700
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle25.100

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.000

*

2.150
High resolution limit [Å]2.1002.100
Rmerge0.0650.362
Total number of observations224980

*

Number of reflections40386
<I/σ(I)>25.64.1
Completeness [%]99.899.8
Redundancy5.63.5

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7

*

22

*

PEG6000, lithium nitrate, calcium chloride, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
1VAPOR DIFFUSION, HANGING DROP7

*

22

*

PEG6000, lithium nitrate, calcium chloride, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111PEG6000
211lithium nitrate
311CaCl2
412CaCl2
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
101reservoirdithiothreitol1 (mM)
111reservoirPEG600012 (%(w/v))
21dropBis-Tris2 (mM)pH7.0
31drop20 (mM)
41dropEDTA0.1 (mM)
51dropdithiothreitol0.5 (mM)
61drop0.01 (%(w/v))
71reservoirbis-Tris50 (mM)pH6.5
81reservoir100 (mM)
91reservoir10 (mM)

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon