Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1NUJ

THE LEADZYME STRUCTURE BOUND TO MG(H20)6(II) AT 1.8 A RESOLUTION

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL9-1
Synchrotron siteSSRL
BeamlineBL9-1
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date1999-03-04
DetectorMAR scanner 345 mm plate
Wavelength(s)0.98
Spacegroup nameP 61
Unit cell lengths60.100, 60.100, 133.100
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution34.000

*

- 1.800
R-factor0.203
Rwork0.203
R-free0.22400
Structure solution methodEXPAND TO P6(1)
Starting model (for MR)NDB ENTRY UR0001
RMSD bond length0.007
RMSD bond angle1.200
Data reduction softwareXDISP/DENZO
Data scaling softwareXDISP
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]34.0001.830
High resolution limit [Å]1.8001.800
Rmerge0.040

*

0.272

*

Total number of observations286623

*

Number of reflections25179

*

<I/σ(I)>21.34.6
Completeness [%]95.287.4
Redundancy3.12.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP620

*

MPD, Mg-Acetate, cacodylate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 20K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111MPD
211Mg-Acetate
311cacodylate
412MPD
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoir21-24 (%(v/v))
21reservoir20 (mM)
31reservoirspermine-HCl1 (mM)
41reservoirsodium cacodylate50 (mM)pH6.0

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon