1NB2
Crystal Structure of Nucleoside Diphosphate Kinase from Bacillus Halodenitrificans
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | NSRRC BEAMLINE BL17B2 |
| Synchrotron site | NSRRC |
| Beamline | BL17B2 |
| Temperature [K] | 100 |
| Detector technology | IMAGE PLATE |
| Collection date | 2001-11-14 |
| Detector | RIGAKU RAXIS IV++ |
| Wavelength(s) | 1.116 |
| Spacegroup name | P 43 3 2 |
| Unit cell lengths | 114.070, 114.070, 114.070 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 25.000 * - 2.200 |
| R-factor | 0.229 |
| Rwork | 0.213 |
| R-free | 0.25200 * |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.734 |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | AMoRE |
| Refinement software | CNS (1.0) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 20.000 | 2.240 |
| High resolution limit [Å] | 2.200 | 2.200 |
| Rmerge | 0.062 * | |
| Number of reflections | 21145 | |
| <I/σ(I)> | 16.1 | 3.4 |
| Completeness [%] | 95.6 * | 64 |
| Redundancy | 7.03 * | 1.6 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6.5 * | 18 * | Sodium Formate, MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | drop | protein | 5.0 (mg/ml) | |
| 2 | 1 | reservoir | sodium formate | 4.2 (M) | |
| 3 | 1 | reservoir | MES | 0.1 (M) | pH6.5 |
