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1N6J

Structural basis of sequence-specific recruitment of histone deacetylases by Myocyte Enhancer Factor-2

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 14-BM-C
Synchrotron siteAPS
Beamline14-BM-C
Temperature [K]101
Detector technologyCCD
DetectorADSC QUANTUM 4
Spacegroup nameP 41 2 2
Unit cell lengths70.140, 70.140, 151.880
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000

*

- 2.200
R-factor0.243
Rwork0.243
R-free0.26800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1egw
RMSD bond length0.007

*

RMSD bond angle1.090

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.280
High resolution limit [Å]2.2002.200
Rmerge0.063

*

0.319

*

Total number of observations364592

*

Number of reflections18733
<I/σ(I)>384.4
Completeness [%]92.7

*

77.7

*

Redundancy19.54.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.217

*

PEG 3500, sodium cholride, BTP, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111PEG 3500
211sodium cholride
311BTP
411H2O
512PEG 3500
612sodium cholride
712H2O
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirbis-Tris-propane50 (mM)pH6.35-6.68
21reservoirPEG100015 (%)
31reservoir50 (mM)
41reservoir10 (mM)
51reservoir5 (mM)
61reservoirglycerol10 (%)
71reservoirdithiothreitol5 (mM)
81reservoirspermine2 (mM)

220472

PDB entries from 2024-05-29

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