Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1JDL

Structure of cytochrome c2 from Rhodospirillum Centenum

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200HB
Temperature [K]298
Detector technologyIMAGE PLATE
Collection date1999-10-10
DetectorRIGAKU RAXIS IIC
Wavelength(s)1.5418
Spacegroup nameP 21 21 21
Unit cell lengths29.700, 59.900, 65.400
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 1.700
R-factor0.192

*

Rwork0.190
R-free0.21000
Structure solution methodSAD, MIR,MOLECULAR REPLACEMENT
Starting model (for MR)2c2c
RMSD bond length0.005

*

RMSD bond angle1.330

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.00020.000
High resolution limit [Å]1.7001.700
Rmerge0.0700.320
Total number of observations223519

*

Number of reflections132481169

*

<I/σ(I)>2986149
Completeness [%]98.688.4
Redundancy16.910
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7277

*

PEG 6000, potassium phosphate, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
1VAPOR DIFFUSION, SITTING DROP7277

*

PEG 6000, potassium phosphate, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
1VAPOR DIFFUSION, SITTING DROP7277

*

PEG 6000, potassium phosphate, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein20 (mg/ml)
21reservoirPEG600010 (%)
31reservoirphosphate0.1 (M)pH7

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon