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1H53

Binding of Phosphate and Pyrophosphate ions at the active site of human Angiogenin as revealed by X-ray Crystallography

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsEMBL/DESY, HAMBURG BEAMLINE X13
Synchrotron siteEMBL/DESY, HAMBURG
BeamlineX13
Temperature [K]287
Collection date1998-09-15
Spacegroup nameP 21 21 2
Unit cell lengths85.383, 37.538, 38.534
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 2.000
R-factor0.198
Rwork0.198
R-free0.26000
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1b1i
RMSD bond length0.010
RMSD bond angle27.100

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareX-PLOR (3.851)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.0002.060
High resolution limit [Å]2.0002.000
Rmerge0.101

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Total number of observations45669

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Number of reflections8677
<I/σ(I)>6.4
Completeness [%]97.885.6
Redundancy5.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

5.216

*

20MM SODIUM CITRATE, 0.2M SODIUM POTASSIUM TARTARATE, 10% PEG 6000 PH 5.2
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirsodium citrate20 (mM)
21reservoirsodium potassium tartrate0.2 (M)
31reservoirPEG600010 (%)

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PDB entries from 2024-05-01

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