1G98
CRYSTAL STRUCTURE ANALYSIS OF RABBIT PHOSPHOGLUCOSE ISOMERASE COMPLEXED WITH 5-PHOSPHOARABINONATE, A TRANSITION STATE ANALOGUE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 14-BM-C |
Synchrotron site | APS |
Beamline | 14-BM-C |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 1999-11-22 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1.000 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 82.829, 116.554, 271.824 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 8.000 - 1.900 |
R-factor | 0.211 * |
Rwork | 0.211 |
R-free | 0.23600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1dqr |
RMSD bond length | 0.009 |
RMSD bond angle | 22.760 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 8.000 | 1.970 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.035 | 0.082 |
Total number of observations | 486988 * | |
Number of reflections | 95997 | |
<I/σ(I)> | 26.86 | 15.45 |
Completeness [%] | 94.3 | 99.8 |
Redundancy | 5.1 | 4.88 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 * | 298 | protein solution: 15-20mg/ml PGI, 10mM imidazole (pH 7.5), 50mM KCl, 3mMNaN3, 5mM 5PAH reservoir solution: 10-15% PEG 8000, 250mM magnesium acetate, 100mM sodium cacodylate (pH6.5). VAPOR DIFFUSION, HANGING DROP at 298K, pH 7.0, temperature 298.0K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 15-20 (mg/ml) | |
2 | 1 | drop | imidazole | 10 (mM) | |
3 | 1 | drop | 50 (mM) | ||
4 | 1 | drop | 3 (mM) | ||
5 | 1 | drop | 5PAH | 5 (mM) | |
6 | 1 | reservoir | PEG8000 | 10-15 (%) | |
7 | 1 | reservoir | magnesium acetate | 250 (mM) | |
8 | 1 | reservoir | sodium cacodylate | 100 (mM) |