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1FZJ

MHC CLASS I NATURAL MUTANT H-2KBM1 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND VESICULAR STOMATITIS VIRUS NUCLEOPROTEIN

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL9-1
Synchrotron siteSSRL
BeamlineBL9-1
Temperature [K]100
Detector technologyIMAGE PLATE
DetectorMARRESEARCH
Spacegroup nameP 21 21 2
Unit cell lengths134.910, 88.350, 45.270
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution15.000 - 1.900
R-factor0.204
Rwork0.204
R-free0.22200
Structure solution methodCNS, done by rigid body refinement of starting model.
Starting model (for MR)pdb-entry 2vaa without peptide water and mutated side chains truncated to alanine.
RMSD bond length0.009
RMSD bond angle25.700

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]15.0001.930
High resolution limit [Å]1.9001.900
Rmerge0.0560.405
Number of reflections431382102

*

<I/σ(I)>20.32.5
Completeness [%]99.298.9
Redundancy3.33.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.417

*

K/Na phosphate, MPD, pH 6.40, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein15 (mg/ml)
21reservoir2.1-2.2 (M)
31reservoirMPD2 (%)

218853

PDB entries from 2024-04-24

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