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Yorodumi- PDB-1uub: Solution structure of a truncated bovine pancreatic trypsin inhib... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1uub | ||||||
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Title | Solution structure of a truncated bovine pancreatic trypsin inhibitor mutant, 3-58 BPTI (K15R, R17A, R42S) | ||||||
Components | BOVINE PANCREATIC TRYPSIN INHIBITORAprotinin | ||||||
Keywords | INHIBITOR / SERINE PROTEASE INHIBITOR / PHARMACEUTICAL / 3D-STRUCT | ||||||
Function / homology | Function and homology information trypsinogen activation / negative regulation of serine-type endopeptidase activity / sulfate binding / potassium channel inhibitor activity / negative regulation of platelet aggregation / zymogen binding / molecular function inhibitor activity / negative regulation of thrombin-activated receptor signaling pathway / serine protease inhibitor complex / serine-type endopeptidase inhibitor activity ...trypsinogen activation / negative regulation of serine-type endopeptidase activity / sulfate binding / potassium channel inhibitor activity / negative regulation of platelet aggregation / zymogen binding / molecular function inhibitor activity / negative regulation of thrombin-activated receptor signaling pathway / serine protease inhibitor complex / serine-type endopeptidase inhibitor activity / protease binding / calcium ion binding / extracellular space Similarity search - Function | ||||||
Biological species | BOS TAURUS (cattle) | ||||||
Method | SOLUTION NMR / distance geometry | ||||||
Authors | Zhang, W. / Nielsen, C.B. / Hansen, P.E. | ||||||
Citation | Journal: To be Published Title: NMR Solution Structures of Modified and Truncated Bovine Pancreatic Trypsin Inhibitor Proteins (3-58 Bpti'S) Authors: Zhang, W. / Nielsen, C.B. / Hansen, P.E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1uub.cif.gz | 309.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1uub.ent.gz | 259.7 KB | Display | PDB format |
PDBx/mmJSON format | 1uub.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/uu/1uub ftp://data.pdbj.org/pub/pdb/validation_reports/uu/1uub | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 6145.041 Da / Num. of mol.: 1 / Fragment: PANCREATIC TRYPSIN INHIBITOR, RESIDUES 38-93 / Mutation: YES Source method: isolated from a genetically manipulated source Source: (gene. exp.) BOS TAURUS (cattle) / Description: SYNTHETIC GENE / Production host: SACCHAROMYCES CEREVISIAE (brewer's yeast) / References: UniProt: P00974 |
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Compound details | FUNCTION: INHIBITS TRYPSIN, KALLIKREIN, CHYMOTRYPSIN, AND PLASMIN. ENGINEERED MUTATION IN CHAIN A, ...FUNCTION: INHIBITS TRYPSIN, KALLIKREIN |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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NMR details | Text: THE STRUCTURE WAS DETERMINED USING PROTON 2D NMR SPECTROSCOPY ON UNLABELED 3-58 BPTI MUTANT |
-Sample preparation
Sample conditions | Ionic strength: 0 / pH: 4.6 / Pressure: 1 atm / Temperature: 303 K |
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-NMR measurement
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: distance geometry / Software ordinal: 1 | ||||||||||||||||
NMR ensemble | Conformer selection criteria: LEAST RESTRAINT VIOLATION & LOWEST ENERGY Conformers calculated total number: 100 / Conformers submitted total number: 19 |