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Yorodumi- PDB-8pti: CRYSTAL STRUCTURE OF A Y35G MUTANT OF BOVINE PANCREATIC TRYPSIN I... -
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-Basic information
Entry | Database: PDB / ID: 8pti | ||||||
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Title | CRYSTAL STRUCTURE OF A Y35G MUTANT OF BOVINE PANCREATIC TRYPSIN INHIBITOR | ||||||
Components | BOVINE PANCREATIC TRYPSIN INHIBITORAprotinin | ||||||
Keywords | PROTEINASE INHIBITOR (TRYPSIN) | ||||||
Function / homology | Function and homology information trypsinogen activation / negative regulation of serine-type endopeptidase activity / sulfate binding / potassium channel inhibitor activity / negative regulation of platelet aggregation / zymogen binding / molecular function inhibitor activity / negative regulation of thrombin-activated receptor signaling pathway / serine protease inhibitor complex / serine-type endopeptidase inhibitor activity ...trypsinogen activation / negative regulation of serine-type endopeptidase activity / sulfate binding / potassium channel inhibitor activity / negative regulation of platelet aggregation / zymogen binding / molecular function inhibitor activity / negative regulation of thrombin-activated receptor signaling pathway / serine protease inhibitor complex / serine-type endopeptidase inhibitor activity / protease binding / calcium ion binding / extracellular space Similarity search - Function | ||||||
Biological species | Bos taurus (cattle) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.8 Å | ||||||
Authors | Housset, D. / Kim, K.-S. / Fuchs, J. / Woodward, C. / Wlodawer, A. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1991 Title: Crystal structure of a Y35G mutant of bovine pancreatic trypsin inhibitor. Authors: Housset, D. / Kim, K.S. / Fuchs, J. / Woodward, C. / Wlodawer, A. #1: Journal: Protein Eng. / Year: 1990 Title: Structural Effects Induced by Removal of a Disulfide-Bridge. The X-Ray Structure of the C30A(Slash)C51A Mutant of Basic Pancreatic Trypsin Inhibitor at 1.6 Angstroms Authors: Eigenbrot, C. / Randal, M. / Kossiakoff, A.A. #2: Journal: Biochemistry / Year: 1990 Title: X-Ray Crystal Structure of the Protease Inhibitor Domain of Alzheimer'S Amyloid Beta-Protein Precursor Authors: Hynes, T.R. / Randal, M. / Kennedy, L.A. / Eigenbrot, C. / Kossiakoff, A.A. #3: Journal: J.Mol.Biol. / Year: 1987 Title: Structure of Form III Crystals of Bovine Pancreatic Trypsin Inhibitor. Authors: Wlodawer, A. / Nachman, J. / Gilliland, G.L. / Gallagher, W. / Woodward, C. #4: Journal: J.Mol.Biol. / Year: 1984 Title: Structure of Bovine Pancreatic Trypsin Inhibitor. Results of Joint Neutron and X-Ray Refinement of Crystal Form II Authors: Wlodawer, A. / Walter, J. / Huber, R. / Sjolin, L. #5: Journal: J.Mol.Biol. / Year: 1987 Title: Comparison of Two Highly Refined Structures of Bovine Pancreatic Trypsin Inhibitor Authors: Wlodawer, A. / Deisenhofer, J. / Huber, R. #6: Journal: J.Mol.Biol. / Year: 1983 Title: Pancreatic Trypsin Inhibitor. A New Crystal Form and its Analysis Authors: Walter, J. / Huber, R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 8pti.cif.gz | 23.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb8pti.ent.gz | 15 KB | Display | PDB format |
PDBx/mmJSON format | 8pti.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/pt/8pti ftp://data.pdbj.org/pub/pdb/validation_reports/pt/8pti | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Components on special symmetry positions |
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-Components
#1: Protein | Mass: 6421.446 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Bos taurus (cattle) / References: UniProt: P00974 |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.15 Å3/Da / Density % sol: 42.84 % | ||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 9.4 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | *PLUS Highest resolution: 1.78 Å / Num. obs: 5482 / % possible obs: 95.6 % / Observed criterion σ(I): 1.5 / Num. measured all: 47955 / Rmerge(I) obs: 0.071 |
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-Processing
Software | Name: PROLSQ / Classification: refinement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Rfactor obs: 0.159 / Highest resolution: 1.8 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.8 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 1.8 Å / Num. reflection obs: 5402 / σ(F): 2 / Rfactor obs: 0.159 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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