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Yorodumi- PDB-1a4d: LOOP D/LOOP E ARM OF ESCHERICHIA COLI 5S RRNA, NMR, MINIMIZED AVE... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1a4d | ||||||
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Title | LOOP D/LOOP E ARM OF ESCHERICHIA COLI 5S RRNA, NMR, MINIMIZED AVERAGE STRUCTURE | ||||||
Components |
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Keywords | RNA / 5S RRNA / INTERNAL LOOP / CROSS-STRAND STACK / TRANSLATION / RIBOSOME / RIBOSOMAL RNA COMPLEX | ||||||
Function / homology | RNA / RNA (> 10) Function and homology information | ||||||
Biological species | Escherichia coli (E. coli) | ||||||
Method | SOLUTION NMR / TORSION ANGLE MOLECULAR DYNAMICS | ||||||
Authors | Dallas, A. / Moore, P.B. | ||||||
Citation | Journal: Structure / Year: 1997 Title: The loop E-loop D region of Escherichia coli 5S rRNA: the solution structure reveals an unusual loop that may be important for binding ribosomal proteins. Authors: Dallas, A. / Moore, P.B. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1a4d.cif.gz | 37.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1a4d.ent.gz | 27 KB | Display | PDB format |
PDBx/mmJSON format | 1a4d.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1a4d_validation.pdf.gz | 295.7 KB | Display | wwPDB validaton report |
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Full document | 1a4d_full_validation.pdf.gz | 295.5 KB | Display | |
Data in XML | 1a4d_validation.xml.gz | 2 KB | Display | |
Data in CIF | 1a4d_validation.cif.gz | 2.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/a4/1a4d ftp://data.pdbj.org/pub/pdb/validation_reports/a4/1a4d | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 6857.093 Da / Num. of mol.: 1 / Fragment: LOOP D/LOOP E ARM Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) / Cellular location: CYTOPLASM / Plasmid: PAD3 / Production host: Escherichia coli (E. coli) / Strain (production host): JM101 |
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#2: RNA chain | Mass: 6397.871 Da / Num. of mol.: 1 / Fragment: LOOP D/LOOP E ARM Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) / Cellular location: CYTOPLASM / Plasmid: PAD3 / Production host: Escherichia coli (E. coli) / Strain (production host): JM101 |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
Software |
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NMR software |
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Refinement | Method: TORSION ANGLE MOLECULAR DYNAMICS / Software ordinal: 1 / Details: FOR REFINEMENT DETAILS, SEE JRNL REFERENCE ABOVE. | |||||||||
NMR ensemble | Conformer selection criteria: NO NOE, DIHEDRAL VIOLATIONS, LOW OVERALL ENERGY STRUCTURES, GOOD LOCAL GEOMETRY Conformers calculated total number: 60 / Conformers submitted total number: 1 |