[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 42 items for (author: booth & c)

EMDB-28138:
3D reconstruction of the apical complex of Plasmodium falciparum (3D7) free merozoite
Method: electron tomography / : Segev-Zarko L, Sun SY, Kim CY

EMDB-28141:
3D reconstruction of the apical complex of Plasmodium falciparum (3D7) free merozoite
Method: electron tomography / : Segev-Zarko L, Sun SY, Kim CY

EMDB-28142:
3D Reconstruction of Plasmodium falciparum (3D7) free merozoite
Method: electron tomography / : Segev-Zarko L, Sun SY, Kim CY

EMDB-28125:
Plasmodium falciparum merozoites apical 2-ring units
Method: subtomogram averaging / : Sun SY, Pintilie GD

EMDB-28126:
Toxoplasma apical rings
Method: subtomogram averaging / : Sun SY, Pintilie GD

EMDB-28139:
Toxoplasma gondii apical complex (ionophore stimulated)
Method: electron tomography / : Segev-Zarko L, Sun SY, Kim CY, Egan ES, Chiu W, Boothroyd JC

EMDB-28140:
Toxoplasma gondii apical complex (non-stimulated)
Method: electron tomography / : Segev-Zarko L, Sun SY, Chiu W, Boothroyd JC

EMDB-26018:
The symmetry-released subpellicular microtubule map from detergent-extracted Toxoplasma cells
Method: subtomogram averaging / : Sun SY, Pintilie GD, Chen M

EMDB-26019:
Subpellicular microtubule from detergent-extract Toxoplasma gondii cells
Method: subtomogram averaging / : Sun SY, Pintilie GD, Chen M, Chiu W

EMDB-26020:
The tubulin-based conoid from detergent-extract Toxoplasma gondii cells
Method: subtomogram averaging / : Sun SY, Pintilie GD, Chen M, Chiu W

PDB-7tnq:
The symmetry-released subpellicular microtubule map from detergent-extracted Toxoplasma cells
Method: subtomogram averaging / : Sun SY, Pintilie GD, Chen M

PDB-7tns:
Subpellicular microtubule from detergent-extract Toxoplasma gondii cells
Method: subtomogram averaging / : Sun SY, Pintilie GD, Chen M, Chiu W

PDB-7tnt:
The tubulin-based conoid from detergent-extract Toxoplasma gondii cells
Method: subtomogram averaging / : Sun SY, Pintilie GD, Chen M, Chiu W

EMDB-26010:
The symmetrized subpellicular microtubule map from intact Toxoplasma gondii cells
Method: subtomogram averaging / : Sun SY, Chen M

EMDB-26006:
3D reconstruction of detergent-extract Toxoplasma gondii cells at the apical end
Method: electron tomography / : Sun SY, Segev-Zarko L

EMDB-26007:
Three-dimensional organization of the apical complex in Toxoplasma tachyzoites
Method: electron tomography / : Sun SY, Segev-Zarko L

EMDB-26008:
In situ average map of conoid with PCR from intact Toxoplasma gondii cells
Method: subtomogram averaging / : Sun SY, Chen M

EMDB-26009:
The conoid segment from intact Toxoplasma gondii cells
Method: subtomogram averaging / : Sun SY, Chen M

EMDB-20212:
Cryo-EM structure of Bimetallic dodecameric cage design 3 (BMC3) from cytochrome cb562
Method: single particle / : Golub E, Subramanian RH, Yan X, Alberstein RG, Tezcan FA

PDB-6ovh:
Cryo-EM structure of Bimetallic dodecameric cage design 3 (BMC3) from cytochrome cb562
Method: single particle / : Golub E, Subramanian RH, Yan X, Alberstein RG, Tezcan FA

EMDB-8630:
Ebola GP spike in situ in viral membrane
Method: single particle / : Booth TF, Beniac DR

PDB-3jd5:
Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
Method: single particle / : Kaushal PS, Sharma MR, Booth TM, Haque EM, Tung CS, Sanbonmatsu KY, Spremulli LL, Agrawal RK

PDB-3j9i:
Thermoplasma acidophilum 20S proteasome
Method: single particle / : Li X, Mooney P, Zheng S, Booth C, Braunfeld MB, Gubbens S, Agard DA, Cheng Y

EMDB-6231:
The export receptor Crm1 forms a dimer to promote nuclear export of HIV RNA
Method: single particle / : Booth DS, Cheng Y, Frankel AD

EMDB-5941:
Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
Method: single particle / : Kaushal PS, Sharma MR, Booth TM, Haque E, Tung C, Sanbonmatsu K, Spremulli L, Agrawal RK

EMDB-5623:
3D reconstruction of archaeal 20S proteasome
Method: single particle / : Li X, Mooney P, Zheng S, Booth C, Braunfeld MB, Gubbens S, Agard DA, Cheng Y

EMDB-5294:
3D reconstruction of frozen hydrated HIV-1 integrase dimer in complex with two Fabs.
Method: single particle / : Wu S, Avila-Sakar A, Kim J, Booth DS, Greenberg CH, Rossi A, Liao M, Alian A, Griner SL, Juge N, Mergel CM, Chaparro-Riggers J, Strop P, Tampe R, Edwards RH, Stroud RM, Craik CS, Cheng Y

EMDB-5295:
3D reconstruction of negatively stained PCSK9 in complex with a Fab
Method: single particle / : Wu S, Avila-Sakar A, Kim J, Booth DS, Greenberg CH, Rossi A, Liao M, Alian A, Griner SL, Juge N, Mergel CM, Chaparro-Riggers J, Strop P, Tampe R, Edwards RH, Stroud RM, Craik CS, Cheng Y

EMDB-1557:
Cryo-EM density map of Epsilon-15 bacteriophage icosahedral reconstruction from JADAS automatically acquired data at 7.3 Angstrom resolution.
Method: single particle / : Zhang J, Nakamura N, Shimizu Y, Liang N, Liu X, Jakana J, Marsh MP, Booth CR, Shinkawa T, Nakata M, Chiu W

PDB-2r1c:
Coordinates of the thermus thermophilus ribosome binding factor A (RbfA) homology model as fitted into the CRYO-EM map of a 30S-RBFA complex
Method: single particle / : Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK

PDB-2r1g:
Coordinates of the thermus thermophilus 30S components neighboring RbfA as obtained by fitting into the CRYO-EM map of A 30S-RBFA complex
Method: single particle / : Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK

EMDB-1413:
Structural aspects of RbfA action during small ribosomal subunit assembly.
Method: single particle / : Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK

EMDB-1423:
Conformational reorganization of the SARS coronavirus spike following receptor binding: implications for membrane fusion.
Method: single particle / : Beniac DR, deVarennes SL, Andonov A, He R, Booth TF

EMDB-1425:
Conformational reorganization of the SARS coronavirus spike following receptor binding: implications for membrane fusion.
Method: single particle / : Beniac DR, deVarennes SL, Andonov A, He R, Booth TF

EMDB-1165:
A 9 angstroms single particle reconstruction from CCD captured images on a 200 kV electron cryomicroscope.
Method: single particle / : Booth C, Jiang W, Baker ML, Zhou ZH, Ludtke SJ, Chiu W

EMDB-1245:
Structural analysis of the anaphase-promoting complex reveals multiple active sites and insights into polyubiquitylation.
Method: single particle / : Passmore LA, Booth CR, Venien-Bryan C, Ludtke SJ, Fioretto C, Johnson LN, Chiu W, Barford D

EMDB-1174:
Structural analysis of the anaphase-promoting complex reveals multiple active sites and insights into polyubiquitylation.
Method: single particle / : Passmore LA, Booth CR, Venien-Bryan C, Ludtke SJ, Fioretto C, Johnson LN, Chiu W, Barford D

PDB-1x18:
Contact sites of ERA GTPase on the THERMUS THERMOPHILUS 30S SUBUNIT
Method: single particle / : Sharma MR, Barat C, Agrawal RK

PDB-1x1l:
Interaction of ERA,a GTPase protein, with the 3'minor domain of the 16S rRNA within the THERMUS THERMOPHILUS 30S subunit.
Method: single particle / : Sharma MR, Barat C, Agrawal RK

EMDB-1077:
Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications.
Method: single particle / : Agrawal RK

PDB-1t1m:
Binding position of ribosome recycling factor (RRF) on the E. coli 70S ribosome
Method: single particle / : Agrawal RK, Sharma MR, Kiel MC, Hirokawa G, Booth TM, Spahn CM, Grassucci RA, Kaji A, Frank J

PDB-1t1o:
Components of the control 70S ribosome to provide reference for the RRF binding site
Method: single particle / : Agrawal RK, Sharma MR, Kiel MC, Hirokawa G, Booth TM, Spahn CM, Grassucci RA, Kaji A, Frank J

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more