YNM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.46Å | |
| N | CM | sing | 1.47Å | 1.48Å | |
| CA | C | sing | 1.51Å | 1.49Å | |
| CA | CB | sing | 1.53Å | 1.54Å | |
| C | O | doub | 1.21Å | 1.25Å | |
| CB | CG | sing | 1.51Å | 1.50Å | |
| CG | CD1 | sing | 1.38Å | 1.41Å | Aromatic |
| CG | CD2 | doub | 1.38Å | 1.40Å | Aromatic |
| CD1 | CE1 | doub | 1.38Å | 1.37Å | Aromatic |
| CD2 | CE2 | sing | 1.38Å | 1.38Å | Aromatic |
| CE1 | CZ | sing | 1.39Å | 1.38Å | Aromatic |
| CE2 | CZ | doub | 1.39Å | 1.39Å | Aromatic |
| OH | CZ | sing | 1.36Å | 1.38Å | |
| C | OXT | sing | 1.34Å | 49.11Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CM | HM1C | sing | 1.09Å | 1.10Å | |
| CM | HM2C | sing | 1.09Å | 1.10Å | |
| CM | HM3C | sing | 1.09Å | 1.10Å | |
| CB | HB1C | sing | 1.09Å | 1.10Å | |
| CB | HB2C | sing | 1.09Å | 1.10Å | |
| CD1 | HD1 | sing | 1.08Å | 1.08Å | |
| CD2 | HD2 | sing | 1.08Å | 1.08Å | |
| CE1 | HE1 | sing | 1.08Å | 1.08Å | |
| CE2 | HE2 | sing | 1.08Å | 1.08Å | |
| OH | HH | sing | 0.97Å | 0.95Å | |
| OXT | HXT | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | CM | 120.3° | 111.0° |
| N | CA | C | 111.2° | 109.5° |
| N | CA | CB | 109.1° | 109.5° |
| CA | N | H | 106.0° | 111.0° |
| N | CA | HA | 108.4° | 109.5° |
| CM | N | H | 106.0° | 111.0° |
| N | CM | HM1C | 109.5° | 109.5° |
| N | CM | HM2C | 109.5° | 109.4° |
| N | CM | HM3C | 109.5° | 109.4° |
| C | CA | CB | 108.9° | 109.5° |
| CA | C | O | 120.7° | 120.0° |
| CA | C | OXT | 57.7° | 120.0° |
| C | CA | HA | 108.6° | 109.5° |
| CA | CB | CG | 116.8° | 109.5° |
| CB | CA | HA | 110.7° | 109.4° |
| CA | CB | HB1C | 107.1° | 109.5° |
| CA | CB | HB2C | 105.4° | 109.4° |
| O | C | OXT | 98.6° | 120.0° |
| CB | CG | CD1 | 120.1° | 119.9° |
| CB | CG | CD2 | 122.0° | 120.0° |
| CG | CB | HB1C | 107.1° | 109.5° |
| CG | CB | HB2C | 105.4° | 109.5° |
| CD1 | CG | CD2 | 117.9° | 120.1° |
| CG | CD1 | CE1 | 120.6° | 120.0° |
| CG | CD1 | HD1 | 119.7° | 120.0° |
| CG | CD2 | CE2 | 121.5° | 120.1° |
| CG | CD2 | HD2 | 119.3° | 119.9° |
| CD1 | CE1 | CZ | 120.1° | 119.9° |
| CE1 | CD1 | HD1 | 119.7° | 120.0° |
| CD1 | CE1 | HE1 | 119.9° | 120.0° |
| CD2 | CE2 | CZ | 119.1° | 119.9° |
| CE2 | CD2 | HD2 | 119.3° | 120.0° |
| CD2 | CE2 | HE2 | 120.5° | 120.0° |
| CE1 | CZ | CE2 | 120.8° | 120.0° |
| CE1 | CZ | OH | 118.7° | 120.0° |
| CZ | CE1 | HE1 | 120.0° | 120.0° |
| CE2 | CZ | OH | 120.4° | 120.0° |
| CZ | CE2 | HE2 | 120.5° | 120.1° |
| CZ | OH | HH | 109.5° | 114.0° |
| C | OXT | HXT | 90.0° | 117.0° |
| HM1C | CM | HM2C | 109.5° | 109.5° |
| HM1C | CM | HM3C | 109.4° | 109.5° |
| HM2C | CM | HM3C | 109.5° | 109.5° |
| HB1C | CB | HB2C | 115.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | CM | H | 120.0° | 124.0° |
| N | CA | C | CB | 120.3° | 120.0° |
| N | CA | C | HA | 119.1° | 120.0° |
| N | CA | CB | HA | 119.2° | 120.0° |
| N | CA | C | O | 70.6° | 0.0° |
| N | CA | CB | CG | 179.7° | 65.0° |
| N | CA | C | OXT | 150.8° | 180.0° |
| CA | N | CM | HM1C | 110.3° | 60.0° |
| CA | N | CM | HM2C | 9.7° | 60.0° |
| CA | N | CM | HM3C | 129.7° | 180.0° |
| N | CA | CB | HB1C | 59.7° | 55.0° |
| N | CA | CB | HB2C | 63.7° | 175.0° |
| CM | N | CA | C | 66.4° | 85.0° |
| CM | N | CA | CB | 53.8° | 155.0° |
| CM | N | CA | HA | 174.4° | 35.0° |
| N | CM | HM1C | HM2C | 120.0° | 120.0° |
| N | CM | HM1C | HM3C | 120.0° | 120.0° |
| N | CM | HM2C | HM3C | 120.0° | 119.9° |
| C | CA | CB | HA | 119.3° | 120.0° |
| CA | C | O | OXT | 57.4° | 179.9° |
| C | CA | CB | CG | 58.8° | 175.0° |
| C | CA | N | H | 173.7° | 39.0° |
| C | CA | CB | HB1C | 178.8° | 65.0° |
| C | CA | CB | HB2C | 57.8° | 55.0° |
| CA | C | OXT | HXT | 90.0° | 180.0° |
| CB | CA | C | O | 49.7° | 120.0° |
| CA | CB | CG | HB1C | 120.0° | 120.0° |
| CA | CB | CG | HB2C | 116.6° | 120.0° |
| CA | CB | CG | CD1 | 138.8° | 90.0° |
| CA | CB | CG | CD2 | 40.0° | 90.3° |
| CB | CA | C | OXT | 30.5° | 60.0° |
| CB | CA | N | H | 66.2° | 81.1° |
| CA | CB | HB1C | HB2C | 116.9° | 120.0° |
| O | C | CA | HA | 170.3° | 120.0° |
| O | C | OXT | HXT | 90.0° | 0.1° |
| CB | CG | CD1 | CD2 | 178.8° | 179.7° |
| CB | CG | CD1 | CE1 | 179.9° | 180.0° |
| CB | CG | CD2 | CE2 | 179.9° | 180.0° |
| CG | CB | CA | HA | 60.5° | 55.0° |
| CG | CB | HB1C | HB2C | 117.0° | 120.0° |
| CB | CG | CD1 | HD1 | 0.1° | 0.1° |
| CB | CG | CD2 | HD2 | 0.1° | 0.0° |
| CG | CD1 | CE1 | HD1 | 180.0° | 179.9° |
| CD1 | CG | CD2 | CE2 | 1.4° | 0.3° |
| CG | CD1 | CE1 | CZ | 0.0° | 0.1° |
| CD1 | CG | CB | HB1C | 101.2° | 30.0° |
| CD1 | CG | CB | HB2C | 22.2° | 150.0° |
| CD1 | CG | CD2 | HD2 | 178.6° | 179.7° |
| CG | CD1 | CE1 | HE1 | 180.0° | 180.0° |
| CD2 | CG | CD1 | CE1 | 1.1° | 0.3° |
| CG | CD2 | CE2 | HD2 | 180.0° | 180.0° |
| CG | CD2 | CE2 | CZ | 0.5° | 0.0° |
| CD2 | CG | CB | HB1C | 80.0° | 149.7° |
| CD2 | CG | CB | HB2C | 156.6° | 29.7° |
| CD2 | CG | CD1 | HD1 | 178.9° | 179.8° |
| CG | CD2 | CE2 | HE2 | 179.5° | 179.9° |
| CD1 | CE1 | CZ | HE1 | 180.0° | 180.0° |
| CD1 | CE1 | CZ | CE2 | 0.9° | 0.2° |
| CD1 | CE1 | CZ | OH | 179.8° | 180.0° |
| CD2 | CE2 | CZ | CE1 | 0.7° | 0.2° |
| CD2 | CE2 | CZ | HE2 | 180.0° | 179.9° |
| CD2 | CE2 | CZ | OH | 180.0° | 180.0° |
| CE1 | CZ | CE2 | OH | 179.3° | 179.8° |
| CZ | CE1 | CD1 | HD1 | 180.0° | 180.0° |
| CE1 | CZ | CE2 | HE2 | 179.3° | 179.7° |
| CE1 | CZ | OH | HH | 64.6° | 90.0° |
| CZ | CE2 | CD2 | HD2 | 179.5° | 180.0° |
| CE2 | CZ | CE1 | HE1 | 179.1° | 179.8° |
| CE2 | CZ | OH | HH | 114.8° | 89.8° |
| OH | CZ | CE1 | HE1 | 0.2° | 0.0° |
| OH | CZ | CE2 | HE2 | 0.0° | 0.1° |
| OXT | C | CA | HA | 90.1° | 59.9° |
| H | N | CA | HA | 54.4° | 159.0° |
| H | N | CM | HM1C | 129.7° | 176.0° |
| H | N | CM | HM2C | 110.3° | 63.9° |
| H | N | CM | HM3C | 9.7° | 56.0° |
| HA | CA | CB | HB1C | 59.5° | 175.0° |
| HA | CA | CB | HB2C | 177.2° | 65.0° |
| HM1C | CM | HM2C | HM3C | 120.0° | 120.1° |
| HD1 | CD1 | CE1 | HE1 | 0.0° | 0.1° |
| HD2 | CD2 | CE2 | HE2 | 0.5° | 0.1° |
