YA4
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2' | C2' | sing | 1.43Å | 1.48Å | |
| C2' | C1' | sing | 1.55Å | 1.60Å | |
| C2' | C3' | sing | 1.55Å | 1.25Å | |
| C1' | O4' | sing | 1.44Å | 1.54Å | |
| C3' | O3' | sing | 1.43Å | 1.46Å | |
| C3' | C4' | sing | 1.55Å | 1.67Å | |
| O4' | C4' | sing | 1.44Å | 1.29Å | |
| C4' | C5' | sing | 1.53Å | 1.47Å | |
| C5' | O5' | sing | 1.43Å | 1.38Å | |
| O5' | P | sing | 1.61Å | 1.54Å | |
| SP3 | P | sing | 2.12Å | 2.14Å | |
| P | OP1 | doub | 1.48Å | 1.68Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C1' | H1'' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| SP3 | HSP3 | sing | 1.34Å | 1.30Å | |
| P | OP3 | sing | 1.61Å | 1.56Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2' | C2' | C1' | 110.5° | 110.5° |
| O2' | C2' | C3' | 106.3° | 110.5° |
| O2' | C2' | H2' | 110.6° | 110.6° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C1' | C2' | C3' | 105.7° | 104.1° |
| C2' | C1' | O4' | 103.7° | 104.8° |
| C2' | C1' | H1' | 110.9° | 110.4° |
| C2' | C1' | H1'' | 110.9° | 110.4° |
| C1' | C2' | H2' | 109.0° | 110.5° |
| C2' | C3' | O3' | 107.3° | 110.5° |
| C2' | C3' | C4' | 106.2° | 104.0° |
| C3' | C2' | H2' | 114.6° | 110.5° |
| C2' | C3' | H3' | 114.7° | 110.5° |
| C1' | O4' | C4' | 106.1° | 105.3° |
| O4' | C1' | H1' | 110.9° | 110.3° |
| O4' | C1' | H1'' | 110.9° | 110.3° |
| O3' | C3' | C4' | 109.1° | 110.5° |
| O3' | C3' | H3' | 111.0° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C3' | C4' | O4' | 109.3° | 104.8° |
| C3' | C4' | C5' | 104.8° | 110.3° |
| C4' | C3' | H3' | 108.3° | 110.7° |
| C3' | C4' | H4' | 107.8° | 110.4° |
| O4' | C4' | C5' | 110.9° | 110.4° |
| O4' | C4' | H4' | 113.3° | 110.5° |
| C4' | C5' | O5' | 109.0° | 109.5° |
| C5' | C4' | H4' | 110.3° | 110.3° |
| C4' | C5' | H5' | 109.6° | 109.4° |
| C4' | C5' | H5'' | 109.6° | 109.5° |
| C5' | O5' | P | 121.8° | 123.0° |
| O5' | C5' | H5' | 109.6° | 109.5° |
| O5' | C5' | H5'' | 109.6° | 109.5° |
| O5' | P | SP3 | 103.8° | 109.5° |
| O5' | P | OP1 | 114.7° | 109.5° |
| O5' | P | OP3 | 98.6° | 109.4° |
| SP3 | P | OP1 | 114.8° | 109.5° |
| P | SP3 | HSP3 | 102.0° | 103.0° |
| SP3 | P | OP3 | 113.8° | 109.5° |
| OP1 | P | OP3 | 109.9° | 109.5° |
| H1' | C1' | H1'' | 109.4° | 110.4° |
| H5' | C5' | H5'' | 109.4° | 109.5° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2' | C2' | C1' | C3' | 114.6° | 118.7° |
| O2' | C2' | C1' | H2' | 121.8° | 122.7° |
| O2' | C2' | C3' | H2' | 122.5° | 122.7° |
| O2' | C2' | C1' | O4' | 83.7° | 142.6° |
| O2' | C2' | C3' | O3' | 25.9° | 0.0° |
| O2' | C2' | C3' | C4' | 90.7° | 118.6° |
| O2' | C2' | C1' | H1' | 157.2° | 98.6° |
| O2' | C2' | C1' | H1'' | 35.3° | 23.8° |
| O2' | C2' | C3' | H3' | 149.7° | 122.6° |
| C1' | C2' | C3' | H2' | 120.0° | 118.6° |
| C2' | C1' | O4' | H1' | 119.1° | 118.9° |
| C2' | C1' | O4' | H1'' | 119.1° | 118.9° |
| C1' | C2' | C3' | O3' | 143.4° | 118.7° |
| C1' | C2' | C3' | C4' | 26.8° | 0.0° |
| C2' | C1' | O4' | C4' | 20.1° | 40.5° |
| C2' | C1' | H1' | H1'' | 122.7° | 122.4° |
| C1' | C2' | C3' | H3' | 92.8° | 118.8° |
| C1' | C2' | O2' | HO2' | 180.0° | 61.4° |
| C3' | C2' | C1' | O4' | 30.8° | 24.0° |
| C2' | C3' | O3' | C4' | 114.7° | 114.6° |
| C2' | C3' | O3' | H3' | 126.1° | 122.6° |
| C2' | C3' | C4' | H3' | 123.7° | 118.7° |
| C2' | C3' | C4' | O4' | 15.3° | 24.0° |
| C2' | C3' | C4' | C5' | 134.2° | 142.8° |
| C3' | C2' | C1' | H1' | 88.2° | 142.8° |
| C3' | C2' | C1' | H1'' | 149.9° | 94.9° |
| C2' | C3' | C4' | H4' | 108.2° | 95.0° |
| C3' | C2' | O2' | HO2' | 65.8° | 176.1° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.5° |
| C1' | O4' | C4' | C3' | 5.4° | 40.5° |
| C1' | O4' | C4' | C5' | 109.6° | 159.3° |
| O4' | C1' | H1' | H1'' | 122.7° | 122.2° |
| O4' | C1' | C2' | H2' | 154.5° | 94.7° |
| C1' | O4' | C4' | H4' | 125.7° | 78.4° |
| O3' | C3' | C4' | H3' | 120.9° | 122.7° |
| O3' | C3' | C4' | O4' | 130.6° | 142.6° |
| O3' | C3' | C4' | C5' | 110.4° | 98.6° |
| O3' | C3' | C2' | H2' | 96.6° | 122.7° |
| O3' | C3' | C4' | H4' | 7.1° | 23.6° |
| C3' | C4' | O4' | C5' | 115.1° | 118.8° |
| C3' | C4' | O4' | H4' | 120.2° | 118.9° |
| C3' | C4' | C5' | H4' | 115.8° | 122.2° |
| C3' | C4' | C5' | O5' | 165.2° | 175.0° |
| C4' | C3' | C2' | H2' | 146.8° | 118.6° |
| C3' | C4' | C5' | H5' | 74.9° | 55.0° |
| C3' | C4' | C5' | H5'' | 45.2° | 65.0° |
| C4' | C3' | O3' | HO3' | 65.3° | 176.0° |
| O4' | C4' | C5' | H4' | 126.4° | 122.4° |
| O4' | C4' | C5' | O5' | 47.3° | 69.7° |
| C4' | O4' | C1' | H1' | 99.0° | 159.4° |
| C4' | O4' | C1' | H1'' | 139.2° | 78.4° |
| O4' | C4' | C3' | H3' | 108.4° | 94.7° |
| O4' | C4' | C5' | H5' | 167.3° | 170.4° |
| O4' | C4' | C5' | H5'' | 72.6° | 50.4° |
| C4' | C5' | O5' | H5' | 119.9° | 120.0° |
| C4' | C5' | O5' | H5'' | 120.0° | 120.0° |
| C4' | C5' | O5' | P | 153.6° | 180.0° |
| C5' | C4' | C3' | H3' | 10.5° | 24.1° |
| C4' | C5' | H5' | H5'' | 120.2° | 120.0° |
| C5' | O5' | P | SP3 | 67.6° | 65.0° |
| C5' | O5' | P | OP1 | 166.3° | 55.0° |
| O5' | C5' | C4' | H4' | 79.1° | 52.8° |
| O5' | C5' | H5' | H5'' | 120.2° | 120.1° |
| C5' | O5' | P | OP3 | 49.6° | 175.0° |
| O5' | P | SP3 | OP1 | 126.0° | 120.0° |
| O5' | P | SP3 | OP3 | 106.1° | 120.0° |
| O5' | P | OP1 | OP3 | 110.0° | 120.0° |
| P | O5' | C5' | H5' | 33.7° | 60.0° |
| P | O5' | C5' | H5'' | 86.4° | 60.0° |
| O5' | P | SP3 | HSP3 | 180.0° | 180.0° |
| O5' | P | OP3 | HOP3 | 120.3° | 60.0° |
| SP3 | P | OP1 | OP3 | 129.8° | 120.0° |
| SP3 | P | OP3 | HOP3 | 130.4° | 59.9° |
| OP1 | P | SP3 | HSP3 | 54.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 180.0° |
| H1' | C1' | C2' | H2' | 35.4° | 24.1° |
| H1'' | C1' | C2' | H2' | 86.4° | 146.5° |
| H2' | C2' | C3' | H3' | 27.2° | 0.2° |
| H2' | C2' | O2' | HO2' | 59.2° | 61.2° |
| H3' | C3' | C4' | H4' | 128.0° | 146.3° |
| H3' | C3' | O3' | HO3' | 54.0° | 61.1° |
| H4' | C4' | C5' | H5' | 40.9° | 67.2° |
| H4' | C4' | C5' | H5'' | 161.0° | 172.8° |
| HSP3 | SP3 | P | OP3 | 73.9° | 60.0° |
