Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

XD2

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CAGCAHdoub1.38Å1.35ÅAromatic
CAGCAIsing1.38Å1.37ÅAromatic
CAHCAJsing1.38Å1.40ÅAromatic
CAICAKdoub1.38Å1.39ÅAromatic
CAJCAZdoub1.38Å1.35ÅAromatic
CAKCAZsing1.38Å1.37ÅAromatic
CAZCBBsing1.51Å1.50Å
CAANBEsing1.47Å1.53Å
OAFCBBsing1.43Å1.39Å
CBBCAWsing1.51Å1.54Å
SATCAMsing1.81Å1.82Å
SATCBAsing1.76Å1.82Å
CAMCAXsing1.51Å1.50Å
NBECBAsing1.35Å1.32ÅAromatic
NBENAQsing1.41Å1.21ÅAromatic
CBANAPdoub1.32Å1.32ÅAromatic
CANCAXsing1.50Å1.54Å
CANSAUsing1.82Å1.81Å
CAWNARsing1.35Å1.33Å
CAWOACdoub1.21Å1.22Å
CAXCAYdoub1.31Å1.37Å
NAQNAOdoub1.29Å1.21ÅAromatic
NARCBCsing1.46Å1.46Å
OAECAVdoub1.22Å1.14Å
NAPNAOsing1.28Å1.23ÅAromatic
CAYCAVsing1.47Å1.46Å
CAYNASsing1.39Å1.29Å
CAVOABsing1.35Å1.13Å
SAUCBDsing1.82Å1.78Å
OADCALdoub1.21Å1.38Å
CBCCBDsing1.53Å1.49Å
CBCCALsing1.51Å1.49Å
NASCBDsing1.47Å1.42Å
CAAH1sing1.09Å1.10Å
CAAH2sing1.09Å1.10Å
CAAH3sing1.09Å1.10Å
OABH4sing0.97Å0.95Å
OAFH6sing0.97Å0.95Å
CAGH7sing1.08Å1.08Å
CAHH8sing1.08Å1.08Å
CAIH9sing1.08Å1.08Å
CAJH10sing1.08Å1.08Å
CAKH11sing1.08Å1.08Å
CALH12sing1.08Å1.08Å
CAMH14sing1.09Å1.10Å
CAMH15sing1.09Å1.10Å
CANH16sing1.09Å1.10Å
CANH17sing1.09Å1.10Å
NARH18sing0.97Å1.00Å
CBBH20sing1.09Å1.10Å
CBCH21sing1.09Å1.10Å
CBDH22sing1.09Å1.10Å
NASH5sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CAHCAGCAI117.1°120.0°
CAGCAHCAJ122.9°120.0°
CAHCAGH7121.4°120.0°
CAGCAHH8118.6°120.0°
CAGCAICAK120.2°119.9°
CAICAGH7121.4°119.9°
CAGCAIH9119.9°120.1°
CAHCAJCAZ120.0°120.0°
CAJCAHH8118.6°120.0°
CAHCAJH10120.0°120.0°
CAICAKCAZ122.4°120.1°
CAKCAIH9119.9°120.0°
CAICAKH11118.8°120.0°
CAJCAZCAK117.4°119.9°
CAJCAZCBB121.1°120.0°
CAZCAJH10119.9°120.0°
CAKCAZCBB121.5°120.0°
CAZCAKH11118.8°120.0°
CAZCBBOAF110.2°109.5°
CAZCBBCAW113.6°109.5°
CAZCBBH20106.4°109.5°
CAANBECBA124.7°127.4°
CAANBENAQ128.0°127.4°
NBECAAH1109.5°109.5°
NBECAAH2109.5°109.4°
NBECAAH3109.5°109.4°
OAFCBBCAW112.5°109.4°
CBBOAFH6109.5°114.0°
OAFCBBH20107.7°109.5°
CBBCAWNAR114.9°120.0°
CBBCAWOAC120.0°120.0°
CAWCBBH20105.9°109.5°
CAMSATCBA106.0°100.0°
SATCAMCAX112.9°109.4°
SATCAMH14108.6°109.5°
SATCAMH15108.6°109.5°
SATCBANBE125.5°126.5°
SATCBANAP128.5°126.5°
CAMCAXCAN118.2°117.2°
CAMCAXCAY119.0°117.2°
CAXCAMH14108.6°109.5°
CAXCAMH15108.6°109.5°
CBANBENAQ107.2°105.2°
NBECBANAP106.0°107.1°
NBENAQNAO108.9°106.8°
CBANAPNAO103.7°110.5°
CAXCANSAU112.2°109.4°
CANCAXCAY122.7°125.6°
CAXCANH16108.8°109.5°
CAXCANH17108.8°109.5°
CANSAUCBD98.9°101.2°
SAUCANH16108.8°109.5°
SAUCANH17108.8°109.5°
NARCAWOAC124.4°120.0°
CAWNARCBC121.6°120.0°
CAWNARH18119.2°120.0°
CAXCAYCAV117.6°116.4°
CAXCAYNAS123.7°127.3°
NAQNAONAP114.1°110.3°
NARCBCCBD110.1°109.5°
NARCBCCAL114.6°109.5°
CBCNARH18119.2°120.0°
NARCBCH21108.2°109.5°
OAECAVCAY121.8°120.0°
OAECAVOAB120.8°120.0°
CAVCAYNAS118.6°116.4°
CAYCAVOAB117.0°120.0°
CAYNASCBD128.5°120.9°
CAYNASH5104.5°119.5°
CAVOABH4109.5°117.0°
SAUCBDCBC122.9°109.9°
SAUCBDNAS115.5°107.2°
SAUCBDH22101.3°110.0°
OADCALCBC109.6°120.0°
OADCALH12125.2°120.0°
CBDCBCCAL108.2°109.5°
CBCCBDNAS107.0°109.9°
CBDCBCH21107.8°109.4°
CBCCBDH22103.6°110.0°
CBCCALH12125.2°120.0°
CALCBCH21107.8°109.5°
NASCBDH22104.1°109.9°
CBDNASH5104.5°119.6°
H1CAAH2109.5°109.5°
H1CAAH3109.4°109.5°
H2CAAH3109.5°109.5°
H14CAMH15109.5°109.5°
H16CANH17109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CAHCAGCAIH7180.0°179.6°
CAGCAHCAJH8180.0°179.8°
CAHCAGCAICAK0.2°0.1°
CAGCAHCAJCAZ1.4°0.1°
CAHCAGCAIH9179.9°179.9°
CAGCAHCAJH10178.6°180.0°
CAICAGCAHCAJ1.2°0.1°
CAGCAICAKH9180.0°180.0°
CAGCAICAKCAZ1.3°0.1°
CAICAGCAHH8178.8°180.0°
CAGCAICAKH11178.7°179.9°
CAHCAJCAZH10180.0°179.9°
CAHCAJCAZCAK0.2°0.1°
CAHCAJCAZCBB178.5°180.0°
CAJCAHCAGH7178.8°179.8°
CAICAKCAZCAJ1.1°0.0°
CAICAKCAZH11180.0°180.0°
CAICAKCAZCBB179.8°179.9°
CAKCAICAGH7179.8°179.7°
CAJCAZCAKCBB178.7°179.9°
CAJCAZCBBOAF116.7°145.1°
CAJCAZCBBCAW116.0°95.0°
CAZCAJCAHH8178.6°179.9°
CAJCAZCAKH11178.9°180.0°
CAJCAZCBBH200.2°25.1°
CAKCAZCBBOAF62.0°35.0°
CAKCAZCBBCAW65.4°84.9°
CAZCAKCAIH9178.7°180.0°
CAKCAZCAJH10179.8°180.0°
CAKCAZCBBH20178.5°155.0°
CAZCBBOAFCAW128.0°120.0°
CAZCBBOAFH20115.6°120.0°
CAZCBBCAWH20116.4°120.0°
CAZCBBCAWNAR91.4°65.0°
CAZCBBCAWOAC97.1°115.0°
CAZCBBOAFH6115.6°60.0°
CBBCAZCAJH101.5°0.1°
CBBCAZCAKH110.2°0.1°
CAANBECBASAT0.8°0.1°
CAANBECBANAQ177.5°179.9°
CAANBECBANAP179.6°179.9°
CAANBENAQNAO179.3°180.0°
NBECAAH1H2120.0°119.9°
NBECAAH1H3120.0°120.0°
NBECAAH2H3120.0°119.9°
OAFCBBCAWH20117.4°120.0°
OAFCBBCAWNAR142.4°175.0°
OAFCBBCAWOAC29.1°4.9°
CBBCAWNAROAC171.1°179.9°
CBBCAWNARCBC175.5°180.0°
CAWCBBOAFH612.4°60.0°
CBBCAWNARH184.5°0.0°
SATCAMCAXH14120.5°120.0°
SATCAMCAXH15120.5°120.0°
CAMSATCBANBE128.4°180.0°
CAMSATCBANAP52.1°0.0°
SATCAMCAXCAN40.7°78.6°
SATCAMCAXCAY143.0°101.4°
SATCAMH14H15118.4°120.0°
CBASATCAMCAX100.3°180.0°
SATCBANBENAP179.6°180.0°
SATCBANBENAQ178.3°180.0°
SATCBANAPNAO179.0°179.9°
CBASATCAMH1420.2°60.0°
CBASATCAMH15139.1°60.0°
CAMCAXCANCAY176.2°180.0°
CAMCAXCANSAU153.3°158.7°
CAMCAXCAYCAV4.2°0.9°
CAMCAXCAYNAS179.4°179.2°
CAXCAMH14H15118.4°120.0°
CAMCAXCANH1686.3°81.3°
CAMCAXCANH1732.8°38.8°
CBANBENAQNAO1.9°0.0°
NBECBANAPNAO1.5°0.0°
CBANBECAAH1176.9°90.0°
CBANBECAAH263.0°150.0°
CBANBECAAH357.0°30.0°
NAQNBECBANAP2.1°0.0°
NBENAQNAONAP1.0°0.0°
NAQNBECAAH10.0°89.9°
NAQNBECAAH2120.0°30.1°
NAQNBECAAH3120.0°150.1°
CBANAPNAONAQ0.4°0.0°
CAXCANSAUH16120.4°120.0°
CAXCANSAUH17120.4°120.0°
CANCAXCAYCAV179.6°179.1°
CANCAXCAYNAS4.4°0.8°
CAXCANSAUCBD43.5°45.2°
CANCAXCAMH14161.2°161.4°
CANCAXCAMH1579.8°41.4°
CAXCANH16H17118.7°120.0°
SAUCANCAXCAY30.5°21.3°
CANSAUCBDCBC92.3°175.7°
CANSAUCBDNAS41.5°56.3°
SAUCANH16H17118.7°120.0°
CANSAUCBDH22153.3°63.2°
CAWNARCBCH18180.0°180.0°
CAWNARCBCCBD88.9°155.0°
CAWNARCBCCAL148.9°85.0°
NARCAWCBBH2025.0°55.0°
CAWNARCBCH2128.6°35.0°
OACCAWNARCBC4.4°0.0°
OACCAWNARH18175.6°179.9°
OACCAWCBBH20146.5°124.9°
CAXCAYCAVOAE10.6°92.5°
CAXCAYCAVNAS175.4°179.9°
CAXCAYCAVOAB176.5°87.5°
CAXCAYNASCBD0.2°14.7°
CAYCAXCAMH1422.5°18.6°
CAYCAXCAMH1596.5°138.6°
CAYCAXCANH1689.9°98.8°
CAYCAXCANH17150.9°141.2°
CAXCAYNASH5122.3°165.3°
NARCBCCBDSAU44.1°62.3°
NARCBCCALOAD19.0°0.0°
NARCBCCBDCAL125.9°120.0°
NARCBCCBDH21117.8°120.0°
NARCBCCALH21120.4°120.0°
NARCBCCBDNAS93.0°180.0°
NARCBCCALH12161.0°180.0°
NARCBCCBDH22157.4°58.9°
OAECAVCAYOAB172.9°179.9°
OAECAVCAYNAS174.0°87.5°
OAECAVOABH40.0°0.0°
CAVCAYNASCBD175.4°165.2°
CAYCAVOABH4173.0°180.0°
CAVCAYNASH552.9°14.8°
NASCAYCAVOAB1.1°92.6°
CAYNASCBDSAU24.1°44.7°
CAYNASCBDCBC116.7°164.1°
CAYNASCBDH5122.5°180.0°
CAYNASCBDH22134.1°74.7°
SAUCBDCBCNAS137.1°117.7°
SAUCBDCBCH22113.3°121.2°
SAUCBDCBCCAL170.1°57.7°
SAUCBDNASH22110.0°119.5°
CBDSAUCANH1676.9°74.9°
CBDSAUCANH17164.0°165.1°
SAUCBDCBCH2173.7°177.7°
SAUCBDNASH598.4°135.3°
OADCALCBCCBD104.3°120.0°
OADCALCBCH12180.0°180.0°
OADCALCBCH21139.5°120.0°
CBDCBCCALH21116.3°120.0°
CBCCBDNASH22109.2°121.2°
CBDCBCCALH1275.8°60.0°
CBDCBCNARH1891.1°25.1°
CBCCBDNASH5120.9°15.9°
CALCBCCBDNAS33.0°60.0°
CALCBCNARH1831.1°95.0°
CALCBCCBDH2276.7°178.9°
NASCBDCBCH21149.3°60.0°
H1CAAH2H3120.0°120.1°
H6OAFCBBH20128.8°180.0°
H7CAGCAHH81.2°0.4°
H7CAGCAIH90.2°0.3°
H8CAHCAJH101.4°0.1°
H9CAICAKH111.3°0.0°
H12CALCBCH2140.5°60.0°
H18NARCBCH21151.4°145.0°
H21CBCCBDH2239.6°61.1°
H22CBDNASH511.6°105.3°

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon