VVY

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C7	C6	doub	1.38Å	1.37Å	Aromatic
C7	C8	sing	1.38Å	1.39Å	Aromatic
C6	C5	sing	1.38Å	1.37Å	Aromatic
C8	C3	doub	1.39Å	1.39Å	Aromatic
C5	C4	doub	1.38Å	1.39Å	Aromatic
C3	C4	sing	1.39Å	1.39Å	Aromatic
C3	O2	sing	1.36Å	1.38Å
O2	C2	sing	1.43Å	1.43Å
C2	C1	sing	1.51Å	1.52Å
C1	N1	sing	1.35Å	1.34Å
C1	O1	doub	1.21Å	1.23Å
N1	C9	sing	1.47Å	1.47Å
N1	C12	sing	1.47Å	1.47Å
C9	C10	sing	1.54Å	1.52Å
C12	C11	sing	1.55Å	1.51Å
C10	C11	sing	1.55Å	1.49Å
C4	H3	sing	1.08Å	1.08Å
C5	H4	sing	1.08Å	1.08Å
C6	H5	sing	1.08Å	1.08Å
C7	H6	sing	1.08Å	1.08Å
C8	H7	sing	1.08Å	1.08Å
C10	H11	sing	1.09Å	1.10Å
C10	H10	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
C2	H1	sing	1.09Å	1.10Å
C9	H9	sing	1.09Å	1.10Å
C9	H8	sing	1.09Å	1.10Å
C11	H13	sing	1.09Å	1.10Å
C11	H12	sing	1.09Å	1.10Å
C12	H14	sing	1.09Å	1.10Å
C12	H15	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C6	C7	C8	120.5°	120.1°
C7	C6	C5	119.6°	120.1°
C7	C6	H5	120.2°	120.0°
C6	C7	H6	119.8°	120.0°
C7	C8	C3	120.0°	119.9°
C8	C7	H6	119.8°	120.0°
C7	C8	H7	120.0°	120.1°
C6	C5	C4	120.9°	120.1°
C6	C5	H4	119.5°	120.0°
C5	C6	H5	120.2°	119.9°
C8	C3	C4	119.5°	119.9°
C8	C3	O2	116.1°	120.0°
C3	C8	H7	120.0°	120.0°
C5	C4	C3	119.4°	119.9°
C5	C4	H3	120.3°	120.1°
C4	C5	H4	119.5°	120.0°
C4	C3	O2	124.4°	120.0°
C3	C4	H3	120.3°	120.0°
C3	O2	C2	120.9°	117.0°
O2	C2	C1	110.4°	109.5°
O2	C2	H2	109.2°	109.5°
O2	C2	H1	109.2°	109.5°
C2	C1	N1	119.2°	120.0°
C2	C1	O1	121.5°	120.0°
C1	C2	H2	109.2°	109.5°
C1	C2	H1	109.2°	109.5°
N1	C1	O1	119.2°	120.0°
C1	N1	C9	123.6°	125.7°
C1	N1	C12	125.9°	125.6°
C9	N1	C12	110.2°	108.7°
N1	C9	C10	103.5°	107.3°
N1	C9	H9	110.9°	109.9°
N1	C9	H8	110.9°	109.8°
N1	C12	C11	101.7°	104.8°
N1	C12	H14	111.4°	110.4°
N1	C12	H15	111.4°	110.4°
C9	C10	C11	103.6°	102.9°
C9	C10	H11	110.9°	110.8°
C9	C10	H10	110.9°	110.9°
C10	C9	H9	110.9°	109.9°
C10	C9	H8	111.0°	109.9°
C12	C11	C10	102.1°	101.6°
C12	C11	H13	111.3°	111.1°
C12	C11	H12	111.3°	111.0°
C11	C12	H14	111.4°	110.4°
C11	C12	H15	111.4°	110.3°
C11	C10	H11	110.9°	110.7°
C11	C10	H10	110.9°	110.7°
C10	C11	H13	111.3°	111.0°
C10	C11	H12	111.3°	111.0°
H11	C10	H10	109.5°	110.7°
H2	C2	H1	109.5°	109.4°
H9	C9	H8	109.5°	110.0°
H13	C11	H12	109.5°	110.9°
H14	C12	H15	109.5°	110.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C6	C7	C8	H6	180.0°	179.9°
C7	C6	C5	H5	180.0°	180.0°
C6	C7	C8	C3	0.6°	0.2°
C7	C6	C5	C4	2.2°	0.0°
C7	C6	C5	H4	177.8°	179.9°
C6	C7	C8	H7	179.4°	180.0°
C8	C7	C6	C5	2.0°	0.1°
C7	C8	C3	H7	180.0°	179.8°
C7	C8	C3	C4	0.6°	0.6°
C7	C8	C3	O2	179.5°	180.0°
C8	C7	C6	H5	178.0°	180.0°
C6	C5	C4	H4	180.0°	179.9°
C6	C5	C4	C3	1.1°	0.4°
C6	C5	C4	H3	178.9°	180.0°
C5	C6	C7	H6	178.0°	180.0°
C8	C3	C4	C5	0.4°	0.6°
C8	C3	C4	O2	179.9°	179.4°
C8	C3	O2	C2	158.8°	180.0°
C8	C3	C4	H3	179.6°	179.7°
C3	C8	C7	H6	179.4°	179.7°
C5	C4	C3	H3	180.0°	179.7°
C5	C4	C3	O2	179.8°	180.0°
C4	C5	C6	H5	177.7°	180.0°
C4	C3	O2	C2	21.3°	0.6°
C3	C4	C5	H4	178.9°	179.8°
C4	C3	C8	H7	179.4°	179.6°
C3	O2	C2	C1	172.9°	180.0°
O2	C3	C4	H3	0.2°	0.3°
O2	C3	C8	H7	0.5°	0.2°
C3	O2	C2	H2	67.0°	59.9°
C3	O2	C2	H1	52.7°	60.0°
O2	C2	C1	H2	120.1°	120.0°
O2	C2	C1	H1	120.2°	120.0°
O2	C2	C1	N1	147.8°	180.0°
O2	C2	C1	O1	30.2°	0.0°
O2	C2	H2	H1	119.5°	119.9°
C2	C1	N1	O1	178.1°	180.0°
C2	C1	N1	C9	133.6°	180.0°
C2	C1	N1	C12	53.8°	0.3°
C1	C2	H2	H1	119.6°	120.0°
C1	N1	C9	C12	173.6°	179.7°
C1	N1	C9	C10	175.2°	179.2°
C1	N1	C12	C11	149.2°	156.1°
N1	C1	C2	H2	27.7°	60.0°
N1	C1	C2	H1	92.0°	60.0°
C1	N1	C9	H9	56.2°	59.7°
C1	N1	C9	H8	65.8°	61.4°
C1	N1	C12	H14	92.1°	85.0°
C1	N1	C12	H15	30.5°	37.4°
O1	C1	N1	C9	44.5°	0.0°
O1	C1	N1	C12	128.1°	179.6°
O1	C1	C2	H2	150.4°	120.0°
O1	C1	C2	H1	89.9°	120.0°
N1	C9	C10	H9	119.0°	119.5°
N1	C9	C10	H8	119.0°	119.4°
C9	N1	C12	C11	24.3°	24.2°
N1	C9	C10	C11	27.3°	22.2°
N1	C9	C10	H11	146.3°	140.5°
N1	C9	C10	H10	91.8°	96.2°
N1	C9	H9	H8	122.8°	121.0°
C9	N1	C12	H14	94.5°	94.7°
C9	N1	C12	H15	143.0°	142.9°
C12	N1	C9	C10	1.5°	1.1°
N1	C12	C11	H14	118.7°	118.8°
N1	C12	C11	H15	118.7°	118.8°
N1	C12	C11	C10	40.6°	37.0°
C12	N1	C9	H9	117.5°	120.5°
C12	N1	C9	H8	120.6°	118.3°
N1	C12	C11	H13	159.4°	81.0°
N1	C12	C11	H12	78.2°	155.1°
N1	C12	H14	H15	123.6°	122.3°
C9	C10	C11	C12	42.4°	35.5°
C9	C10	C11	H11	119.1°	118.4°
C9	C10	C11	H10	119.0°	118.5°
C9	C10	H11	H10	122.7°	123.4°
C10	C9	H9	H8	122.8°	121.1°
C9	C10	C11	H13	161.2°	82.6°
C9	C10	C11	H12	76.4°	153.6°
C12	C11	C10	H13	118.8°	118.2°
C12	C11	C10	H12	118.8°	118.1°
C12	C11	C10	H11	161.5°	153.9°
C12	C11	C10	H10	76.6°	83.0°
C12	C11	H13	H12	123.5°	123.9°
C11	C12	H14	H15	123.6°	122.3°
C11	C10	H11	H10	122.7°	123.1°
C11	C10	C9	H9	91.8°	97.3°
C11	C10	C9	H8	146.3°	141.6°
C10	C11	H13	H12	123.4°	123.8°
C10	C11	C12	H14	78.2°	81.8°
C10	C11	C12	H15	159.3°	155.8°
H3	C4	C5	H4	1.1°	0.1°
H4	C5	C6	H5	2.3°	0.1°
H5	C6	C7	H6	2.0°	0.0°
H6	C7	C8	H7	0.6°	0.1°
H11	C10	C9	H9	27.3°	21.0°
H11	C10	C9	H8	94.7°	100.1°
H11	C10	C11	H13	79.7°	35.7°
H11	C10	C11	H12	42.7°	88.0°
H10	C10	C9	H9	149.2°	144.3°
H10	C10	C9	H8	27.3°	23.2°
H10	C10	C11	H13	42.2°	158.9°
H10	C10	C11	H12	164.6°	35.1°
H13	C11	C12	H14	40.6°	160.1°
H13	C11	C12	H15	81.9°	37.7°
H12	C11	C12	H14	163.1°	36.3°
H12	C11	C12	H15	40.5°	86.1°

Release date:	2020-09-30
Definition date:	2020-09-17
Last modified:	2020-09-25
Release status:	REL
Processing site:	RCSB
Derived from:	5RLD