Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

VOD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C2C3doub1.33Å1.32Å
C3C4sing1.48Å1.48Å
C4C5sing1.40Å1.35ÅAromatic
C4C9doub1.39Å1.40ÅAromatic
C5C6doub1.38Å1.38ÅAromatic
C6C7sing1.38Å1.39ÅAromatic
C7C8doub1.38Å1.40ÅAromatic
C7C10sing1.51Å1.51Å
C8C9sing1.38Å1.39ÅAromatic
C10S11sing1.81Å1.68Å
S11O12doub1.42Å1.47Å
S11O13doub1.42Å1.47Å
S11O11sing1.52Å1.65Å
C2H21Csing1.08Å1.08Å
C2H22Csing1.08Å1.08Å
C3H3sing1.08Å1.08Å
C5H5sing1.08Å1.08Å
C9H9sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
C8H8sing1.08Å1.08Å
C10H101sing1.09Å1.10Å
C10H102sing1.09Å1.10Å
O11H11sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C3C4122.9°120.0°
C3C2H21C120.0°120.0°
C3C2H22C120.0°120.0°
C2C3H3118.6°120.0°
C3C4C5119.1°120.1°
C3C4C9124.3°120.1°
C4C3H3118.5°120.0°
C5C4C9116.5°119.8°
C4C5C6125.5°119.8°
C4C5H5117.2°120.1°
C4C9C8119.6°119.8°
C4C9H9120.3°120.1°
C5C6C7118.9°120.1°
C6C5H5117.2°120.1°
C5C6H6120.6°120.0°
C6C7C8117.1°120.3°
C6C7C10126.1°119.9°
C7C6H6120.5°119.9°
C8C7C10116.8°119.8°
C7C8C9122.4°120.1°
C7C8H8118.8°120.0°
C7C10S11116.3°109.5°
C7C10H101107.7°109.5°
C7C10H102107.7°109.4°
C8C9H9120.2°120.1°
C9C8H8118.9°119.9°
C10S11O12105.5°110.6°
C10S11O13125.6°110.5°
C10S11O1199.9°104.4°
S11C10H101107.7°109.5°
S11C10H102107.7°109.5°
O12S11O13111.4°121.0°
O12S11O11107.7°104.3°
O13S11O11105.1°104.3°
S11O11H11109.5°114.0°
H21CC2H22C120.0°120.0°
H101C10H102109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C3C4H3180.0°180.0°
C2C3C4C50.6°180.0°
C2C3C4C9174.6°0.3°
C3C2H21CH22C180.0°179.7°
C3C4C5C9175.5°179.7°
C3C4C5C6180.0°180.0°
C3C4C9C8178.6°179.7°
C4C3C2H21C0.0°180.0°
C4C3C2H22C180.0°0.3°
C3C4C5H50.0°0.0°
C3C4C9H91.3°0.0°
C4C5C6H5180.0°180.0°
C4C5C6C72.7°0.1°
C5C4C9C83.4°0.6°
C5C4C3H3179.4°0.0°
C5C4C9H9176.6°179.8°
C4C5C6H6177.3°180.0°
C9C4C5C64.5°0.3°
C4C9C8C70.7°0.6°
C4C9C8H9180.0°179.6°
C9C4C3H35.4°179.7°
C9C4C5H5175.5°179.7°
C4C9C8H8179.3°179.7°
C5C6C7H6180.0°180.0°
C5C6C7C80.3°0.0°
C5C6C7C10179.8°180.0°
C6C7C8C10180.0°180.0°
C6C7C8C91.1°0.3°
C6C7C10S1136.5°90.0°
C7C6C5H5177.3°180.0°
C6C7C8H8178.9°180.0°
C6C7C10H10184.5°150.0°
C6C7C10H102157.5°30.0°
C7C8C9H8180.0°179.7°
C8C7C10S11143.5°90.0°
C7C8C9H9179.3°179.8°
C8C7C6H6179.7°180.0°
C8C7C10H10195.5°30.0°
C8C7C10H10222.5°150.0°
C10C7C8C9178.9°179.7°
C7C10S11H101121.0°120.0°
C7C10S11H102121.0°119.9°
C7C10S11O12178.2°68.4°
C7C10S11O1346.5°68.4°
C7C10S11O1170.2°180.0°
C10C7C6H60.2°0.0°
C10C7C8H81.1°0.0°
C7C10H101H102116.9°120.0°
C10S11O12O13139.2°131.5°
C10S11O12O11106.0°111.7°
C10S11O13O11114.3°111.7°
S11C10H101H102116.9°120.1°
C10S11O11H11131.2°180.0°
O12S11O13O11116.4°116.8°
O12S11C10H10160.9°171.6°
O12S11C10H10257.2°51.6°
O12S11O11H11118.9°63.9°
O13S11C10H101167.5°51.6°
O13S11C10H10274.5°171.7°
O13S11O11H110.0°63.9°
O11S11C10H10150.7°60.0°
O11S11C10H102168.8°60.0°
H21CC2C3H3180.0°0.0°
H22CC2C3H30.0°179.7°
H5C5C6H62.7°0.0°
H9C9C8H80.7°0.0°

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon