Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

VGL

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.48Å1.54Å
C1C6sing1.39Å1.40ÅAromatic
C1N2doub1.33Å1.34ÅAromatic
C3C4doub1.39Å1.39ÅAromatic
C3N2sing1.32Å1.32ÅAromatic
C4N5sing1.32Å1.32ÅAromatic
C2O1doub1.21Å1.26Å
C2O2sing1.35Å1.27Å
C6N5doub1.32Å1.33ÅAromatic
C6H6sing1.08Å1.08Å
C3H3sing1.08Å1.08Å
C4H4sing1.08Å1.08Å
O2H2sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C6121.9°120.1°
C2C1N2118.5°120.1°
C1C2O1115.3°120.0°
C1C2O2120.3°120.0°
C6C1N2119.5°119.8°
C1C6N5121.1°119.9°
C1C6H6119.4°120.1°
C1N2C3118.9°119.9°
C4C3N2121.4°120.1°
C3C4N5120.6°120.2°
C4C3H3119.3°119.9°
C3C4H4119.7°119.9°
N2C3H3119.3°120.0°
C4N5C6118.4°120.1°
N5C4H4119.7°119.9°
O1C2O2124.2°120.0°
C2O2H2109.5°117.0°
N5C6H6119.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C6N2177.2°179.8°
C2C1N2C3178.5°180.0°
C1C2O1O2175.4°179.9°
C2C1C6N5178.6°180.0°
C2C1C6H61.4°0.0°
C1C2O2H2175.2°180.0°
C6C1N2C31.2°0.2°
C1C6N5C41.1°0.1°
C6C1C2O133.7°0.0°
C6C1C2O2150.7°179.9°
C1C6N5H6180.0°179.9°
C1N2C3C40.8°0.0°
N2C1C2O1143.6°179.8°
N2C1C2O232.0°0.3°
N2C1C6N51.4°0.2°
N2C1C6H6178.6°179.7°
C1N2C3H3179.2°179.7°
C4C3N2H3180.0°179.7°
C3C4N5H4180.0°179.8°
C3C4N5C60.7°0.3°
N2C3C4N50.5°0.3°
N2C3C4H4179.5°179.9°
C4N5C6H6178.9°180.0°
N5C4C3H3179.5°180.0°
O1C2O2H20.0°0.1°
C6N5C4H4179.3°179.9°
H3C3C4H40.5°0.3°

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon