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UDX

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1'C2'sing1.53Å1.51Å
C1'O5'sing1.43Å1.43Å
C1'O3Bsing1.43Å1.39Å
C1'H1'sing1.09Å1.12Å
C2'O2'sing1.43Å1.41Å
C2'C3'sing1.53Å1.54Å
C2'H2'1sing1.09Å1.12Å
O2'HO'2sing0.97Å0.95Å
C3'O3'sing1.43Å1.42Å
C3'C4'sing1.53Å1.51Å
C3'H3'1sing1.09Å1.11Å
O3'HO'3sing0.97Å0.95Å
C4'O4'sing1.43Å1.42Å
C4'C5'sing1.53Å1.52Å
C4'H4'1sing1.09Å1.12Å
O4'HO'4sing0.97Å0.95Å
C5'O5'sing1.43Å1.44Å
C5'H5'1sing1.09Å1.11Å
C5'H5'2sing1.09Å1.12Å
PBO1Bdoub1.48Å1.48Å
PBO2Bsing1.61Å1.49Å
PBO3Bsing1.61Å1.59Å
PBO3Asing1.61Å1.59Å
O2BHOB2sing0.97Å0.95Å
O3APAsing1.61Å1.59Å
PAO1Adoub1.48Å1.48Å
PAO2Asing1.61Å1.47Å
PAO5Dsing1.61Å1.60Å
O2AHOA2sing0.97Å0.95Å
O5DC5Dsing1.43Å1.42Å
C5DC4Dsing1.53Å1.52Å
C5DH5A1sing1.09Å1.11Å
C5DH5A2sing1.09Å1.12Å
C4DO4Dsing1.44Å1.46Å
C4DC3Dsing1.54Å1.52Å
C4DH4A1sing1.09Å1.12Å
O4DC1Dsing1.44Å1.45Å
C3DO3Dsing1.43Å1.44Å
C3DC2Dsing1.55Å1.52Å
C3DH3A1sing1.09Å1.11Å
O3DHOA3sing0.97Å0.95Å
C2DO2Dsing1.43Å1.41Å
C2DC1Dsing1.55Å1.51Å
C2DH2A1sing1.09Å1.11Å
O2DHOC2sing0.97Å0.95Å
C1DN1sing1.46Å1.45Å
C1DH1'1sing1.09Å1.12Å
N1C6sing1.37Å1.36Å
N1C2sing1.34Å1.36Å
C6C5doub1.35Å1.32Å
C6H61sing1.08Å1.10Å
C2O2doub1.22Å1.23Å
C2N3sing1.35Å1.38Å
N3C4sing1.35Å1.38Å
N3HN3sing0.97Å1.02Å
C4O4doub1.22Å1.22Å
C4C5sing1.42Å1.41Å
C5H51sing1.08Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2'C1'O5'111.2°109.8°
C2'C1'O3B109.0°109.4°
C2'C1'H1'109.8°109.4°
C1'C2'O2'107.5°109.5°
C1'C2'C3'110.4°109.1°
C1'C2'H2'1110.3°109.6°
O5'C1'O3B112.7°109.4°
O5'C1'H1'105.8°109.4°
C1'O5'C5'115.8°107.6°
O3BC1'H1'108.2°109.4°
C1'O3BPB121.2°106.8°
O2'C2'C3'109.8°109.6°
O2'C2'H2'1110.9°109.5°
C2'O2'HO'2107.5°106.8°
C3'C2'H2'1108.1°109.4°
C2'C3'O3'110.6°109.6°
C2'C3'C4'108.0°108.6°
C2'C3'H3'1109.5°109.6°
O3'C3'C4'108.7°109.9°
O3'C3'H3'1108.8°109.6°
C3'O3'HO'3110.6°106.8°
C4'C3'H3'1111.3°109.5°
C3'C4'O4'109.8°109.6°
C3'C4'C5'107.9°109.1°
C3'C4'H4'1110.9°109.5°
O4'C4'C5'111.4°109.5°
O4'C4'H4'1107.4°109.5°
C4'O4'HO'4109.8°106.9°
C5'C4'H4'1109.3°109.6°
C4'C5'O5'109.4°109.8°
C4'C5'H5'1112.2°109.4°
C4'C5'H5'2112.2°109.4°
O5'C5'H5'1112.2°109.4°
O5'C5'H5'2112.2°109.4°
H5'1C5'H5'298.2°109.4°
O1BPBO2B119.7°109.5°
O1BPBO3B108.6°109.5°
O1BPBO3A109.2°109.5°
O2BPBO3B107.3°109.5°
O2BPBO3A105.3°109.4°
PBO2BHOB2119.7°106.8°
O3BPBO3A105.9°109.5°
PBO3APA137.2°106.9°
O3APAO1A104.6°109.5°
O3APAO2A109.1°109.4°
O3APAO5D104.5°109.5°
O1APAO2A120.0°109.5°
O1APAO5D108.3°109.5°
O2APAO5D109.1°109.5°
PAO2AHOA2109.1°106.8°
PAO5DC5D120.8°106.9°
O5DC5DC4D110.3°109.5°
O5DC5DH5A1111.9°109.4°
O5DC5DH5A2111.9°109.5°
C4DC5DH5A1111.9°109.4°
C4DC5DH5A2111.9°109.5°
C5DC4DO4D109.2°109.9°
C5DC4DC3D110.7°109.9°
C5DC4DH4A1108.1°109.8°
H5A1C5DH5A298.5°109.5°
O4DC4DC3D106.8°107.4°
O4DC4DH4A1111.8°109.9°
C4DO4DC1D108.3°107.0°
C3DC4DH4A1110.3°109.8°
C4DC3DO3D108.3°110.9°
C4DC3DC2D103.3°104.0°
C4DC3DH3A1114.3°110.4°
O4DC1DC2D106.0°103.5°
O4DC1DN1113.9°110.6°
O4DC1DH1'1108.4°110.7°
O3DC3DC2D110.1°110.5°
O3DC3DH3A1108.0°110.4°
C3DO3DHOA3108.3°106.8°
C2DC3DH3A1112.7°110.5°
C3DC2DO2D111.0°110.9°
C3DC2DC1D101.8°102.1°
C3DC2DH2A1113.2°111.0°
O2DC2DC1D108.7°110.9°
O2DC2DH2A1106.8°110.8°
C2DO2DHOC2111.1°106.8°
C1DC2DH2A1115.3°110.9°
C2DC1DN1108.1°110.7°
C2DC1DH1'1114.2°110.6°
N1C1DH1'1106.3°110.6°
C1DN1C6120.2°119.6°
C1DN1C2117.8°119.7°
C6N1C2122.0°120.6°
N1C6C5122.4°119.7°
N1C6H61120.5°120.2°
N1C2O2122.2°119.5°
N1C2N3114.6°120.9°
C5C6H61117.0°120.1°
C6C5C4120.3°119.1°
C6C5H51116.3°120.5°
O2C2N3123.2°119.6°
C2N3C4126.4°120.3°
C2N3HN3116.7°119.8°
C4N3HN3116.9°119.9°
N3C4O4121.2°120.4°
N3C4C5114.3°119.3°
O4C4C5124.5°120.3°
C4C5H51123.4°120.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2'C1'O5'O3B122.7°120.1°
C2'C1'O5'H1'119.2°120.0°
C2'C1'O3BH1'119.4°119.8°
C1'C2'O2'C3'120.1°119.6°
C1'C2'O2'H2'1120.6°120.3°
C1'C2'C3'H2'1120.6°120.0°
C1'C2'O2'HO'2180.0°60.1°
C1'C2'C3'O3'177.0°173.7°
C1'C2'C3'C4'58.1°53.6°
C1'C2'C3'H3'163.2°66.0°
C2'C1'O5'C5'53.1°67.7°
C2'C1'O3BPB160.2°149.7°
O5'C1'O3BH1'116.7°119.9°
O5'C1'C2'O2'171.9°178.8°
O5'C1'C2'C3'52.2°61.3°
O5'C1'C2'H2'167.1°58.5°
C1'O5'C5'C4'57.3°67.6°
C1'O5'C5'H5'168.0°52.4°
C1'O5'C5'H5'2177.5°172.3°
O5'C1'O3BPB75.8°90.0°
O3BC1'C2'O2'47.1°61.1°
O3BC1'C2'C3'72.6°58.8°
O3BC1'C2'H2'1168.1°178.7°
O3BC1'O5'C5'69.6°52.4°
C1'O3BPBO1B16.5°60.0°
C1'O3BPBO2B147.2°60.0°
C1'O3BPBO3A100.7°180.0°
H1'C1'C2'O2'71.3°58.7°
H1'C1'C2'C3'169.0°178.7°
H1'C1'C2'H2'149.7°61.5°
H1'C1'O5'C5'172.3°172.3°
H1'C1'O3BPB40.9°29.9°
O2'C2'C3'H2'1121.0°120.2°
O2'C2'C3'O3'64.7°66.4°
O2'C2'C3'C4'176.5°173.5°
O2'C2'C3'H3'155.1°53.9°
C3'C2'O2'HO'260.0°179.7°
C2'C3'O3'C4'118.4°119.3°
C2'C3'O3'H3'1120.2°120.3°
C2'C3'C4'H3'1120.2°119.7°
C2'C3'O3'HO'3180.0°179.9°
C2'C3'C4'O4'176.6°173.5°
C2'C3'C4'C5'61.8°53.6°
C2'C3'C4'H4'157.9°66.4°
H2'1C2'O2'HO'259.4°60.2°
H2'1C2'C3'O3'56.3°53.8°
H2'1C2'C3'C4'62.5°66.3°
H2'1C2'C3'H3'1176.2°174.1°
O3'C3'C4'H3'1119.8°120.4°
O3'C3'C4'O4'56.5°66.6°
O3'C3'C4'C5'178.2°173.5°
O3'C3'C4'H4'162.1°53.5°
C4'C3'O3'HO'361.6°60.6°
C3'C4'O4'C5'119.5°119.7°
C3'C4'O4'H4'1120.8°120.1°
C3'C4'C5'H4'1120.7°119.9°
C3'C4'O4'HO'4180.0°179.8°
C3'C4'C5'O5'60.6°61.2°
C3'C4'C5'H5'164.7°58.9°
C3'C4'C5'H5'2174.2°178.7°
H3'1C3'O3'HO'359.8°59.7°
H3'1C3'C4'O4'63.3°53.9°
H3'1C3'C4'C5'58.4°66.1°
H3'1C3'C4'H4'1178.1°174.0°
O4'C4'C5'H4'1118.6°120.2°
O4'C4'C5'O5'178.8°178.9°
O4'C4'C5'H5'156.0°61.1°
O4'C4'C5'H5'253.5°58.8°
C5'C4'O4'HO'460.5°60.2°
C4'C5'O5'H5'1125.3°120.0°
C4'C5'O5'H5'2125.2°120.1°
C4'C5'H5'1H5'2118.2°119.9°
H4'1C4'O4'HO'459.2°60.0°
H4'1C4'C5'O5'60.2°58.7°
H4'1C4'C5'H5'1174.6°178.8°
H4'1C4'C5'H5'265.1°61.4°
O5'C5'H5'1H5'2118.1°119.9°
O1BPBO2BO3B124.2°120.0°
O1BPBO2BO3A123.3°120.0°
O1BPBO3BO3A117.2°120.0°
O1BPBO2BHOB2180.0°179.9°
O1BPBO3APA83.2°60.0°
O2BPBO3BO3A112.1°120.0°
O2BPBO3APA147.1°60.0°
O3BPBO2BHOB255.8°60.0°
O3BPBO3APA33.6°180.0°
O3APBO2BHOB256.7°60.0°
PBO3APAO1A137.0°60.0°
PBO3APAO2A7.4°60.0°
PBO3APAO5D109.2°180.0°
O3APAO1AO2A122.8°119.9°
O3APAO1AO5D111.1°120.0°
O3APAO2AO5D113.6°120.0°
O3APAO2AHOA2180.0°60.1°
O3APAO5DC5D64.6°180.0°
O1APAO2AO5D125.8°120.0°
O1APAO2AHOA259.4°180.0°
O1APAO5DC5D175.8°60.0°
O2APAO5DC5D51.9°60.0°
O5DPAO2AHOA266.4°59.9°
PAO5DC5DC4D174.8°180.0°
PAO5DC5DH5A149.5°60.0°
PAO5DC5DH5A260.0°60.0°
O5DC5DC4DH5A1125.3°119.9°
O5DC5DC4DH5A2125.2°120.0°
O5DC5DH5A1H5A2117.8°120.0°
O5DC5DC4DO4D70.7°61.7°
O5DC5DC4DC3D46.7°179.7°
O5DC5DC4DH4A1167.6°59.3°
C4DC5DH5A1H5A2117.8°120.0°
C5DC4DO4DC3D119.7°119.6°
C5DC4DO4DH4A1119.5°121.0°
C5DC4DC3DH4A1119.6°120.9°
C5DC4DO4DC1D118.7°146.0°
C5DC4DC3DO3D147.5°119.7°
C5DC4DC3DC2D95.8°121.4°
C5DC4DC3DH3A127.0°2.9°
H5A1C5DC4DO4D164.0°58.3°
H5A1C5DC4DC3D78.6°59.8°
H5A1C5DC4DH4A142.3°179.3°
H5A2C5DC4DO4D54.6°178.3°
H5A2C5DC4DC3D171.9°60.3°
H5A2C5DC4DH4A167.2°60.7°
O4DC4DC3DH4A1121.7°119.5°
O4DC4DC3DO3D93.7°120.7°
O4DC4DC3DC2D23.0°1.9°
O4DC4DC3DH3A1145.8°116.7°
C4DO4DC1DC2D21.8°40.1°
C4DO4DC1DN1140.6°158.7°
C4DO4DC1DH1'1101.3°78.4°
C3DC4DO4DC1D1.0°26.4°
C4DC3DO3DC2D112.3°114.8°
C4DC3DO3DH3A1124.3°122.7°
C4DC3DC2DH3A1123.9°118.5°
C4DC3DO3DHOA3179.9°176.2°
C4DC3DC2DO2D150.5°139.2°
C4DC3DC2DC1D34.9°21.0°
C4DC3DC2DH2A189.4°97.2°
H4A1C4DO4DC1D121.8°93.0°
H4A1C4DC3DO3D28.0°1.2°
H4A1C4DC3DC2D144.7°117.6°
H4A1C4DC3DH3A192.5°123.9°
O4DC1DC2DC3D35.4°37.1°
O4DC1DC2DO2D152.7°155.2°
O4DC1DC2DN1122.6°118.5°
O4DC1DC2DH1'1119.3°118.6°
O4DC1DC2DH2A187.5°81.1°
O4DC1DN1H1'1119.3°122.9°
O4DC1DN1C646.7°121.5°
O4DC1DN1C2132.5°58.2°
O3DC3DC2DH3A1120.7°122.5°
O3DC3DC2DO2D35.1°20.2°
O3DC3DC2DC1D80.5°98.0°
O3DC3DC2DH2A1155.2°143.8°
C2DC3DO3DHOA367.6°61.4°
C3DC2DO2DC1D111.2°112.6°
C3DC2DO2DH2A1123.8°123.7°
C3DC2DC1DH2A1122.9°118.3°
C3DC2DO2DHOC2179.9°67.4°
C3DC2DC1DN1158.0°155.7°
C3DC2DC1DH1'183.9°81.4°
H3A1C3DO3DHOA355.8°61.2°
H3A1C3DC2DO2D85.6°102.3°
H3A1C3DC2DC1D158.8°139.5°
H3A1C3DC2DH2A134.5°21.3°
O2DC2DC1DH2A1119.8°123.6°
O2DC2DC1DN184.8°86.2°
O2DC2DC1DH1'133.4°36.7°
C1DC2DO2DHOC268.7°180.0°
C2DC1DN1H1'1123.1°122.9°
C2DC1DN1C670.9°124.4°
C2DC1DN1C2110.0°55.9°
H2A1C2DO2DHOC256.2°56.3°
H2A1C2DC1DN135.0°37.4°
H2A1C2DC1DH1'1153.2°160.3°
C1DN1C6C2179.1°179.7°
C1DN1C6C5179.1°180.0°
C1DN1C6H610.8°0.1°
C1DN1C2O21.8°0.3°
C1DN1C2N3178.8°179.8°
H1'1C1DN1C6166.0°1.5°
H1'1C1DN1C213.1°178.9°
N1C6C5H61179.9°179.9°
C6N1C2O2179.1°180.0°
C6N1C2N30.4°0.5°
N1C6C5C40.3°0.1°
N1C6C5H51179.8°180.0°
C2N1C6C50.0°0.3°
C2N1C6H61179.9°179.8°
N1C2O2N3179.4°179.4°
N1C2N3C40.5°0.5°
N1C2N3HN3179.4°179.7°
C6C5C4N30.2°0.1°
C6C5C4O4178.7°180.0°
C6C5C4H51180.0°180.0°
H61C6C5C4179.7°180.0°
H61C6C5H510.3°0.0°
O2C2N3C4178.9°180.0°
O2C2N3HN31.1°0.3°
C2N3C4HN3179.9°179.8°
C2N3C4O4178.4°179.7°
C2N3C4C50.2°0.3°
N3C4O4C5178.5°180.0°
N3C4C5H51179.9°180.0°
HN3N3C4O41.7°0.0°
HN3N3C4C5179.7°179.9°
O4C4C5H511.3°0.0°

218853

PDB entries from 2024-04-24

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