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Summary Geometry Related PDB entries

TMM

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	doub	1.39Å	1.40Å	Aromatic
C1	C6	sing	1.39Å	1.39Å	Aromatic
C1	C1A	sing	1.48Å	1.52Å
C2	C3	sing	1.40Å	1.39Å	Aromatic
C2	H2	sing	1.08Å	1.10Å
C3	C4	doub	1.39Å	1.39Å	Aromatic
C3	C3A	sing	1.48Å	1.57Å
C4	C5	sing	1.39Å	1.39Å	Aromatic
C4	H4	sing	1.08Å	1.10Å
C5	C6	doub	1.40Å	1.37Å	Aromatic
C5	C5A	sing	1.48Å	1.51Å
C6	H6	sing	1.08Å	1.10Å
C1A	O1A	doub	1.22Å	1.23Å
C1A	O2A	sing	1.35Å	1.33Å
C3A	O3A	doub	1.21Å	1.24Å
C3A	O4A	sing	1.35Å	1.40Å
C5A	O5A	doub	1.21Å	1.23Å
C5A	O6A	sing	1.35Å	1.23Å
O2A	HO2	sing	0.97Å	0.95Å
O4A	HO4	sing	0.97Å	0.95Å
O6A	HO6	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	C6	118.8°	120.1°
C2	C1	C1A	123.4°	120.0°
C1	C2	C3	121.4°	119.9°
C1	C2	H2	119.6°	120.1°
C6	C1	C1A	117.7°	120.0°
C1	C6	C5	121.0°	120.0°
C1	C6	H6	120.2°	120.1°
C1	C1A	O1A	121.4°	120.0°
C1	C1A	O2A	117.3°	120.0°
C3	C2	H2	119.0°	120.0°
C2	C3	C4	117.4°	120.0°
C2	C3	C3A	128.1°	120.0°
C4	C3	C3A	114.2°	120.0°
C3	C4	C5	122.3°	120.0°
C3	C4	H4	119.1°	120.0°
C3	C3A	O3A	109.8°	120.0°
C3	C3A	O4A	120.3°	120.0°
C5	C4	H4	118.6°	120.0°
C4	C5	C6	119.0°	120.0°
C4	C5	C5A	125.4°	120.0°
C6	C5	C5A	115.7°	120.0°
C5	C6	H6	118.8°	120.0°
C5	C5A	O5A	120.3°	120.0°
C5	C5A	O6A	117.7°	120.0°
O1A	C1A	O2A	121.2°	120.0°
C1A	O2A	HO2	117.3°	120.1°
O3A	C3A	O4A	123.6°	120.0°
C3A	O4A	HO4	120.3°	120.1°
O5A	C5A	O6A	122.0°	120.0°
C5A	O6A	HO6	117.7°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	C6	C1A	177.5°	179.8°
C1	C2	C3	H2	180.0°	180.0°
C1	C2	C3	C4	2.8°	0.0°
C1	C2	C3	C3A	175.8°	180.0°
C2	C1	C6	C5	1.5°	0.4°
C2	C1	C6	H6	178.5°	180.0°
C2	C1	C1A	O1A	14.7°	0.0°
C2	C1	C1A	O2A	164.4°	180.0°
C6	C1	C2	C3	0.4°	0.2°
C6	C1	C2	H2	179.6°	179.8°
C1	C6	C5	C4	0.9°	0.4°
C1	C6	C5	H6	180.0°	179.6°
C1	C6	C5	C5A	179.6°	179.8°
C6	C1	C1A	O1A	168.0°	179.8°
C6	C1	C1A	O2A	12.9°	0.2°
C1A	C1	C2	C3	176.9°	180.0°
C1A	C1	C2	H2	3.1°	0.0°
C1A	C1	C6	C5	179.0°	179.8°
C1A	C1	C6	H6	1.0°	0.2°
C1	C1A	O1A	O2A	179.1°	180.0°
C1	C1A	O2A	HO2	180.0°	180.0°
C2	C3	C4	C3A	174.0°	180.0°
C2	C3	C4	C5	3.5°	0.0°
C2	C3	C4	H4	176.5°	180.0°
C2	C3	C3A	O3A	160.5°	0.0°
C2	C3	C3A	O4A	46.4°	180.0°
H2	C2	C3	C4	177.2°	180.0°
H2	C2	C3	C3A	4.2°	0.0°
C3	C4	C5	H4	180.0°	180.0°
C3	C4	C5	C6	1.7°	0.2°
C3	C4	C5	C5A	177.8°	180.0°
C4	C3	C3A	O3A	12.7°	180.0°
C4	C3	C3A	O4A	140.4°	0.0°
C3A	C3	C4	C5	177.4°	180.0°
C3A	C3	C4	H4	2.6°	0.0°
C3	C3A	O3A	O4A	152.0°	180.0°
C3	C3A	O4A	HO4	180.0°	180.0°
C4	C5	C6	C5A	179.5°	179.8°
C4	C5	C6	H6	179.1°	180.0°
C4	C5	C5A	O5A	29.1°	0.1°
C4	C5	C5A	O6A	150.9°	180.0°
H4	C4	C5	C6	178.3°	179.8°
H4	C4	C5	C5A	2.2°	0.0°
C6	C5	C5A	O5A	151.4°	179.9°
C6	C5	C5A	O6A	28.6°	0.2°
C5A	C5	C6	H6	0.4°	0.2°
C5	C5A	O5A	O6A	180.0°	179.9°
C5	C5A	O6A	HO6	180.0°	180.0°
O1A	C1A	O2A	HO2	0.9°	0.0°
O3A	C3A	O4A	HO4	30.8°	0.0°
O5A	C5A	O6A	HO6	0.1°	0.1°

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