RBF
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1 | C2 | sing | 1.33Å | 1.39Å | |
| N1 | C10 | doub | 1.32Å | 1.35Å | |
| C2 | O2 | doub | 1.22Å | 1.20Å | |
| C2 | N3 | sing | 1.34Å | 1.37Å | |
| N3 | C4 | sing | 1.35Å | 1.37Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C4 | O4 | doub | 1.22Å | 1.22Å | |
| C4 | C4A | sing | 1.48Å | 1.50Å | |
| C4A | N5 | doub | 1.31Å | 1.28Å | |
| C4A | C10 | sing | 1.47Å | 1.39Å | |
| N5 | C5A | sing | 1.34Å | 1.39Å | |
| C5A | C6 | doub | 1.41Å | 1.39Å | Aromatic |
| C5A | C9A | sing | 1.41Å | 1.39Å | Aromatic |
| C6 | C7 | sing | 1.36Å | 1.36Å | Aromatic |
| C6 | HC6 | sing | 1.08Å | 1.08Å | |
| C7 | C7M | sing | 1.51Å | 1.52Å | |
| C7 | C8 | doub | 1.39Å | 1.42Å | Aromatic |
| C7M | HC71 | sing | 1.09Å | 1.10Å | |
| C7M | HC72 | sing | 1.09Å | 1.10Å | |
| C7M | HC73 | sing | 1.09Å | 1.10Å | |
| C8 | C8M | sing | 1.51Å | 1.56Å | |
| C8 | C9 | sing | 1.38Å | 1.35Å | Aromatic |
| C8M | HC81 | sing | 1.09Å | 1.10Å | |
| C8M | HC82 | sing | 1.09Å | 1.10Å | |
| C8M | HC83 | sing | 1.09Å | 1.10Å | |
| C9 | C9A | doub | 1.39Å | 1.40Å | Aromatic |
| C9 | HC9 | sing | 1.08Å | 1.08Å | |
| C9A | N10 | sing | 1.38Å | 1.37Å | |
| N10 | C10 | sing | 1.36Å | 1.34Å | |
| N10 | C1' | sing | 1.47Å | 1.51Å | |
| C1' | C2' | sing | 1.53Å | 1.54Å | |
| C1' | HC11 | sing | 1.09Å | 1.10Å | |
| C1' | HC12 | sing | 1.09Å | 1.10Å | |
| C2' | O2' | sing | 1.43Å | 1.45Å | |
| C2' | C3' | sing | 1.53Å | 1.50Å | |
| C2' | HC2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.40Å | |
| C3' | C4' | sing | 1.53Å | 1.47Å | |
| C3' | HC3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | O4' | sing | 1.43Å | 1.41Å | |
| C4' | C5' | sing | 1.53Å | 1.59Å | |
| C4' | HC4' | sing | 1.09Å | 1.10Å | |
| O4' | HO4' | sing | 0.97Å | 0.95Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| C5' | HC51 | sing | 1.09Å | 1.10Å | |
| C5' | HC52 | sing | 1.09Å | 1.10Å | |
| O5' | HO5' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2 | N1 | C10 | 126.6° | 121.5° |
| N1 | C2 | O2 | 126.0° | 118.0° |
| N1 | C2 | N3 | 116.2° | 124.1° |
| N1 | C10 | C4A | 119.2° | 118.7° |
| N1 | C10 | N10 | 124.1° | 122.3° |
| O2 | C2 | N3 | 117.8° | 118.0° |
| C2 | N3 | C4 | 121.6° | 121.3° |
| C2 | N3 | HN3 | 119.2° | 119.3° |
| C4 | N3 | HN3 | 119.2° | 119.4° |
| N3 | C4 | O4 | 124.3° | 121.4° |
| N3 | C4 | C4A | 120.7° | 117.1° |
| O4 | C4 | C4A | 114.9° | 121.5° |
| C4 | C4A | N5 | 118.3° | 122.2° |
| C4 | C4A | C10 | 115.7° | 117.3° |
| N5 | C4A | C10 | 126.0° | 120.5° |
| C4A | N5 | C5A | 115.3° | 120.7° |
| C4A | C10 | N10 | 116.7° | 119.0° |
| N5 | C5A | C6 | 117.4° | 119.8° |
| N5 | C5A | C9A | 123.8° | 121.0° |
| C6 | C5A | C9A | 118.8° | 119.2° |
| C5A | C6 | C7 | 119.3° | 119.9° |
| C5A | C6 | HC6 | 120.4° | 120.0° |
| C5A | C9A | C9 | 123.5° | 119.6° |
| C5A | C9A | N10 | 115.0° | 120.3° |
| C7 | C6 | HC6 | 120.4° | 120.1° |
| C6 | C7 | C7M | 125.5° | 119.6° |
| C6 | C7 | C8 | 119.9° | 120.7° |
| C7M | C7 | C8 | 114.6° | 119.7° |
| C7 | C7M | HC71 | 109.5° | 109.5° |
| C7 | C7M | HC72 | 109.5° | 109.5° |
| C7 | C7M | HC73 | 109.5° | 109.5° |
| C7 | C8 | C8M | 117.0° | 119.7° |
| C7 | C8 | C9 | 123.2° | 120.6° |
| HC71 | C7M | HC72 | 109.4° | 109.4° |
| HC71 | C7M | HC73 | 109.5° | 109.5° |
| HC72 | C7M | HC73 | 109.5° | 109.5° |
| C8M | C8 | C9 | 119.8° | 119.7° |
| C8 | C8M | HC81 | 109.5° | 109.5° |
| C8 | C8M | HC82 | 109.5° | 109.5° |
| C8 | C8M | HC83 | 109.5° | 109.4° |
| C8 | C9 | C9A | 115.3° | 119.9° |
| C8 | C9 | HC9 | 122.4° | 120.0° |
| HC81 | C8M | HC82 | 109.5° | 109.5° |
| HC81 | C8M | HC83 | 109.5° | 109.5° |
| HC82 | C8M | HC83 | 109.4° | 109.4° |
| C9A | C9 | HC9 | 122.4° | 120.1° |
| C9 | C9A | N10 | 121.5° | 120.1° |
| C9A | N10 | C10 | 123.1° | 118.5° |
| C9A | N10 | C1' | 122.1° | 120.7° |
| C10 | N10 | C1' | 114.8° | 120.7° |
| N10 | C1' | C2' | 104.8° | 109.5° |
| N10 | C1' | HC11 | 110.7° | 109.5° |
| N10 | C1' | HC12 | 110.6° | 109.5° |
| C2' | C1' | HC11 | 110.6° | 109.4° |
| C2' | C1' | HC12 | 110.6° | 109.4° |
| C1' | C2' | O2' | 111.0° | 109.4° |
| C1' | C2' | C3' | 110.7° | 109.5° |
| C1' | C2' | HC2' | 109.9° | 109.5° |
| HC11 | C1' | HC12 | 109.5° | 109.5° |
| O2' | C2' | C3' | 103.5° | 109.5° |
| O2' | C2' | HC2' | 111.1° | 109.4° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C3' | C2' | HC2' | 110.4° | 109.5° |
| C2' | C3' | O3' | 103.4° | 109.5° |
| C2' | C3' | C4' | 117.8° | 109.5° |
| C2' | C3' | HC3' | 106.5° | 109.4° |
| O3' | C3' | C4' | 113.8° | 109.5° |
| O3' | C3' | HC3' | 107.8° | 109.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | HC3' | 107.0° | 109.5° |
| C3' | C4' | O4' | 120.0° | 109.5° |
| C3' | C4' | C5' | 104.6° | 109.5° |
| C3' | C4' | HC4' | 110.9° | 109.5° |
| O4' | C4' | C5' | 99.0° | 109.5° |
| O4' | C4' | HC4' | 111.8° | 109.4° |
| C4' | O4' | HO4' | 109.5° | 113.9° |
| C5' | C4' | HC4' | 109.2° | 109.4° |
| C4' | C5' | O5' | 98.5° | 109.5° |
| C4' | C5' | HC51 | 112.1° | 109.5° |
| C4' | C5' | HC52 | 112.1° | 109.5° |
| O5' | C5' | HC51 | 112.2° | 109.5° |
| O5' | C5' | HC52 | 112.2° | 109.4° |
| C5' | O5' | HO5' | 109.5° | 114.0° |
| HC51 | C5' | HC52 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N1 | C2 | O2 | N3 | 178.6° | 179.9° |
| N1 | C2 | N3 | C4 | 0.9° | 0.1° |
| N1 | C2 | N3 | HN3 | 179.1° | 180.0° |
| C2 | N1 | C10 | C4A | 0.6° | 0.1° |
| C2 | N1 | C10 | N10 | 179.1° | 179.9° |
| C10 | N1 | C2 | O2 | 178.7° | 180.0° |
| C10 | N1 | C2 | N3 | 0.1° | 0.1° |
| N1 | C10 | C4A | C4 | 0.5° | 0.0° |
| N1 | C10 | C4A | N5 | 178.6° | 180.0° |
| N1 | C10 | C4A | N10 | 179.7° | 180.0° |
| N1 | C10 | N10 | C9A | 177.6° | 180.0° |
| N1 | C10 | N10 | C1' | 1.5° | 0.0° |
| O2 | C2 | N3 | C4 | 179.7° | 180.0° |
| O2 | C2 | N3 | HN3 | 0.4° | 0.1° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 177.6° | 180.0° |
| C2 | N3 | C4 | C4A | 1.0° | 0.0° |
| N3 | C4 | O4 | C4A | 178.7° | 180.0° |
| N3 | C4 | C4A | N5 | 179.5° | 180.0° |
| N3 | C4 | C4A | C10 | 0.3° | 0.0° |
| HN3 | N3 | C4 | O4 | 2.4° | 0.1° |
| HN3 | N3 | C4 | C4A | 179.0° | 180.0° |
| O4 | C4 | C4A | N5 | 0.8° | 0.0° |
| O4 | C4 | C4A | C10 | 178.4° | 180.0° |
| C4 | C4A | N5 | C10 | 179.1° | 180.0° |
| C4 | C4A | N5 | C5A | 176.7° | 180.0° |
| C4 | C4A | C10 | N10 | 179.3° | 180.0° |
| C4A | N5 | C5A | C6 | 176.3° | 180.0° |
| C4A | N5 | C5A | C9A | 3.6° | 0.1° |
| N5 | C4A | C10 | N10 | 1.6° | 0.0° |
| C10 | C4A | N5 | C5A | 4.2° | 0.0° |
| C4A | C10 | N10 | C9A | 2.1° | 0.0° |
| C4A | C10 | N10 | C1' | 178.8° | 180.0° |
| N5 | C5A | C6 | C9A | 179.9° | 180.0° |
| N5 | C5A | C6 | C7 | 179.4° | 179.9° |
| N5 | C5A | C6 | HC6 | 0.6° | 0.0° |
| N5 | C5A | C9A | C9 | 180.0° | 180.0° |
| N5 | C5A | C9A | N10 | 0.4° | 0.0° |
| C5A | C6 | C7 | HC6 | 180.0° | 180.0° |
| C5A | C6 | C7 | C7M | 179.5° | 180.0° |
| C5A | C6 | C7 | C8 | 1.2° | 0.0° |
| C6 | C5A | C9A | C9 | 0.1° | 0.0° |
| C6 | C5A | C9A | N10 | 179.5° | 180.0° |
| C9A | C5A | C6 | C7 | 0.5° | 0.0° |
| C9A | C5A | C6 | HC6 | 179.5° | 180.0° |
| C5A | C9A | C9 | C8 | 0.1° | 0.0° |
| C5A | C9A | C9 | N10 | 179.6° | 180.0° |
| C5A | C9A | C9 | HC9 | 179.9° | 180.0° |
| C5A | C9A | N10 | C10 | 2.5° | 0.0° |
| C5A | C9A | N10 | C1' | 178.4° | 180.0° |
| C6 | C7 | C7M | C8 | 178.4° | 180.0° |
| C6 | C7 | C7M | HC71 | 91.0° | 90.1° |
| C6 | C7 | C7M | HC72 | 149.0° | 150.0° |
| C6 | C7 | C7M | HC73 | 29.0° | 30.0° |
| C6 | C7 | C8 | C8M | 178.7° | 180.0° |
| C6 | C7 | C8 | C9 | 1.3° | 0.0° |
| HC6 | C6 | C7 | C7M | 0.5° | 0.0° |
| HC6 | C6 | C7 | C8 | 178.8° | 180.0° |
| C7 | C7M | HC71 | HC72 | 120.0° | 119.9° |
| C7 | C7M | HC71 | HC73 | 120.0° | 120.1° |
| C7 | C7M | HC72 | HC73 | 120.0° | 120.1° |
| C7M | C7 | C8 | C8M | 0.2° | 0.0° |
| C7M | C7 | C8 | C9 | 179.8° | 180.0° |
| C8 | C7 | C7M | HC71 | 90.6° | 89.9° |
| C8 | C7 | C7M | HC72 | 29.4° | 30.0° |
| C8 | C7 | C7M | HC73 | 149.4° | 150.0° |
| C7 | C8 | C8M | C9 | 180.0° | 180.0° |
| C7 | C8 | C8M | HC81 | 90.0° | 90.0° |
| C7 | C8 | C8M | HC82 | 150.0° | 149.9° |
| C7 | C8 | C8M | HC83 | 30.0° | 30.0° |
| C7 | C8 | C9 | C9A | 0.6° | 0.0° |
| C7 | C8 | C9 | HC9 | 179.4° | 179.9° |
| HC71 | C7M | HC72 | HC73 | 120.0° | 120.0° |
| C8 | C8M | HC81 | HC82 | 120.0° | 120.0° |
| C8 | C8M | HC81 | HC83 | 120.0° | 120.0° |
| C8 | C8M | HC82 | HC83 | 120.0° | 119.9° |
| C8M | C8 | C9 | C9A | 179.4° | 180.0° |
| C8M | C8 | C9 | HC9 | 0.6° | 0.0° |
| C9 | C8 | C8M | HC81 | 90.0° | 90.0° |
| C9 | C8 | C8M | HC82 | 30.0° | 30.0° |
| C9 | C8 | C8M | HC83 | 150.0° | 150.0° |
| C8 | C9 | C9A | HC9 | 180.0° | 180.0° |
| C8 | C9 | C9A | N10 | 179.5° | 180.0° |
| HC81 | C8M | HC82 | HC83 | 120.0° | 120.0° |
| C9 | C9A | N10 | C10 | 177.1° | 180.0° |
| C9 | C9A | N10 | C1' | 2.0° | 0.0° |
| HC9 | C9 | C9A | N10 | 0.5° | 0.0° |
| C9A | N10 | C10 | C1' | 179.1° | 180.0° |
| C9A | N10 | C1' | C2' | 76.4° | 90.0° |
| C9A | N10 | C1' | HC11 | 42.8° | 150.0° |
| C9A | N10 | C1' | HC12 | 164.3° | 30.0° |
| C10 | N10 | C1' | C2' | 104.4° | 90.0° |
| C10 | N10 | C1' | HC11 | 136.3° | 30.0° |
| C10 | N10 | C1' | HC12 | 14.8° | 150.0° |
| N10 | C1' | C2' | HC11 | 119.3° | 120.0° |
| N10 | C1' | C2' | HC12 | 119.3° | 120.0° |
| N10 | C1' | HC11 | HC12 | 122.2° | 120.1° |
| N10 | C1' | C2' | O2' | 74.0° | 60.0° |
| N10 | C1' | C2' | C3' | 171.6° | 180.0° |
| N10 | C1' | C2' | HC2' | 49.3° | 59.9° |
| C2' | C1' | HC11 | HC12 | 122.1° | 119.9° |
| C1' | C2' | O2' | C3' | 118.8° | 120.0° |
| C1' | C2' | O2' | HC2' | 122.7° | 120.0° |
| C1' | C2' | C3' | HC2' | 122.0° | 120.0° |
| C1' | C2' | O2' | HO2' | 180.0° | 60.0° |
| C1' | C2' | C3' | O3' | 73.9° | 60.0° |
| C1' | C2' | C3' | C4' | 52.5° | 180.0° |
| C1' | C2' | C3' | HC3' | 172.6° | 60.0° |
| HC11 | C1' | C2' | O2' | 166.7° | 180.0° |
| HC11 | C1' | C2' | C3' | 52.4° | 60.0° |
| HC11 | C1' | C2' | HC2' | 69.9° | 60.1° |
| HC12 | C1' | C2' | O2' | 45.2° | 60.0° |
| HC12 | C1' | C2' | C3' | 69.1° | 60.0° |
| HC12 | C1' | C2' | HC2' | 168.6° | 180.0° |
| O2' | C2' | C3' | HC2' | 119.0° | 120.0° |
| O2' | C2' | C3' | O3' | 45.1° | 180.0° |
| O2' | C2' | C3' | C4' | 171.5° | 60.0° |
| O2' | C2' | C3' | HC3' | 68.4° | 60.0° |
| C3' | C2' | O2' | HO2' | 61.2° | 60.0° |
| C2' | C3' | O3' | C4' | 128.9° | 120.0° |
| C2' | C3' | O3' | HC3' | 112.6° | 120.0° |
| C2' | C3' | C4' | HC3' | 119.9° | 120.0° |
| C2' | C3' | O3' | HO3' | 180.0° | 60.0° |
| C2' | C3' | C4' | O4' | 38.8° | 60.0° |
| C2' | C3' | C4' | C5' | 148.5° | 180.0° |
| C2' | C3' | C4' | HC4' | 93.9° | 60.0° |
| HC2' | C2' | O2' | HO2' | 57.3° | 180.0° |
| HC2' | C2' | C3' | O3' | 164.1° | 60.0° |
| HC2' | C2' | C3' | C4' | 69.5° | 60.0° |
| HC2' | C2' | C3' | HC3' | 50.6° | 180.0° |
| O3' | C3' | C4' | HC3' | 119.0° | 120.0° |
| O3' | C3' | C4' | O4' | 160.0° | 180.0° |
| O3' | C3' | C4' | C5' | 90.3° | 60.0° |
| O3' | C3' | C4' | HC4' | 27.3° | 60.0° |
| C4' | C3' | O3' | HO3' | 51.1° | 60.0° |
| C3' | C4' | O4' | C5' | 112.7° | 120.0° |
| C3' | C4' | O4' | HC4' | 132.4° | 120.0° |
| C3' | C4' | C5' | HC4' | 118.7° | 120.0° |
| C3' | C4' | O4' | HO4' | 180.0° | 60.0° |
| C3' | C4' | C5' | O5' | 94.6° | 175.0° |
| C3' | C4' | C5' | HC51 | 23.6° | 55.0° |
| C3' | C4' | C5' | HC52 | 147.2° | 65.0° |
| HC3' | C3' | O3' | HO3' | 67.4° | 180.0° |
| HC3' | C3' | C4' | O4' | 81.0° | 60.0° |
| HC3' | C3' | C4' | C5' | 28.6° | 60.0° |
| HC3' | C3' | C4' | HC4' | 146.2° | NaN° |
| O4' | C4' | C5' | HC4' | 116.9° | 119.9° |
| O4' | C4' | C5' | O5' | 141.1° | 65.0° |
| O4' | C4' | C5' | HC51 | 100.7° | 175.1° |
| O4' | C4' | C5' | HC52 | 22.9° | 55.1° |
| C5' | C4' | O4' | HO4' | 67.3° | 60.0° |
| C4' | C5' | O5' | HC51 | 118.2° | 120.0° |
| C4' | C5' | O5' | HC52 | 118.2° | 120.0° |
| C4' | C5' | HC51 | HC52 | 125.1° | 120.0° |
| C4' | C5' | O5' | HO5' | 180.0° | 179.9° |
| HC4' | C4' | O4' | HO4' | 47.6° | 180.0° |
| HC4' | C4' | C5' | O5' | 24.2° | 55.0° |
| HC4' | C4' | C5' | HC51 | 142.3° | 65.0° |
| HC4' | C4' | C5' | HC52 | 94.0° | 175.0° |
| O5' | C5' | HC51 | HC52 | 125.2° | 120.0° |
| HC51 | C5' | O5' | HO5' | 61.8° | 60.0° |
| HC52 | C5' | O5' | HO5' | 61.9° | 60.0° |
