Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PDN

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.32Å1.40Å
C1C10sing1.50Å1.55Å
C1HC1sing1.08Å1.10Å
C2C3sing1.47Å1.48Å
C2HC2sing1.08Å1.10Å
C3C4sing1.47Å1.47Å
C3O1doub1.22Å1.19Å
C4C5doub1.33Å1.37Å
C4HC4sing1.08Å1.10Å
C5C6sing1.52Å1.62Å
C5C10sing1.50Å1.58Å
C6C7sing1.53Å1.47Å
C6HC61sing1.09Å1.12Å
C6HC62sing1.09Å1.12Å
C7C8sing1.53Å1.41Å
C7HC71sing1.09Å1.12Å
C7HC72sing1.09Å1.11Å
C8C9sing1.54Å1.61Å
C8C14sing1.51Å1.55Å
C8HC8sing1.09Å1.12Å
C9C10sing1.53Å1.51Å
C9C11sing1.51Å1.60Å
C9HC9sing1.09Å1.11Å
C10C19sing1.53Å1.52Å
C11C12sing1.52Å1.54Å
C11O2doub1.21Å1.37Å
C12C13sing1.52Å1.48Å
C12H121sing1.09Å1.11Å
C12H122sing1.09Å1.12Å
C13C14sing1.55Å1.54Å
C13C17sing1.53Å1.57Å
C13C18sing1.53Å1.59Å
C14C15sing1.53Å1.57Å
C14HC41sing1.09Å1.12Å
C15C16sing1.55Å1.41Å
C15H151sing1.09Å1.12Å
C15H152sing1.09Å1.12Å
C16C17sing1.57Å1.55Å
C16H161sing1.09Å1.11Å
C16H162sing1.09Å1.12Å
C17C20sing1.51Å1.56Å
C17O3sing1.43Å1.52Å
C18H181sing1.09Å1.11Å
C18H182sing1.09Å1.11Å
C18H183sing1.09Å1.12Å
C19H191sing1.09Å1.12Å
C19H192sing1.09Å1.12Å
C19H193sing1.09Å1.12Å
C20C21doub1.32Å1.13Å
C20O4sing1.36Å1.31Å
C21O5sing1.36Å1.43Å
C21HC12sing1.08Å1.11Å
O3HO3sing0.97Å0.95Å
O4HO4sing0.97Å0.95Å
O5HO5sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C10122.1°124.1°
C2C1HC1119.0°117.9°
C1C2C3122.6°119.8°
C1C2HC2118.7°120.1°
C10C1HC1118.9°118.0°
C1C10C5113.0°113.5°
C1C10C9114.4°110.5°
C1C10C19102.0°107.9°
C3C2HC2118.7°120.1°
C2C3C4116.5°118.5°
C2C3O1121.1°120.8°
C4C3O1122.5°120.7°
C3C4C5125.2°120.7°
C3C4HC4117.4°119.6°
C5C4HC4117.4°119.7°
C4C5C6121.9°118.9°
C4C5C10120.6°123.2°
C6C5C10117.5°117.8°
C5C6C7105.8°108.6°
C5C6HC61113.6°109.6°
C5C6HC62113.6°109.6°
C5C10C9107.1°108.9°
C5C10C19109.6°107.7°
C7C6HC61113.6°109.6°
C7C6HC62113.6°109.6°
C6C7C8120.9°109.3°
C6C7HC71108.1°109.5°
C6C7HC72108.1°109.6°
HC61C6HC6296.9°109.8°
C8C7HC71108.1°109.5°
C8C7HC72108.1°109.5°
C7C8C9111.8°109.2°
C7C8C14113.3°111.6°
C7C8HC8107.7°109.5°
HC71C7HC72101.8°109.5°
C9C8C14108.3°107.5°
C9C8HC8107.7°109.5°
C8C9C10110.9°108.1°
C8C9C11109.9°110.3°
C8C9HC9107.2°109.4°
C14C8HC8107.7°109.5°
C8C14C13115.6°107.5°
C8C14C15120.3°115.3°
C8C14HC41106.2°110.4°
C10C9C11114.1°110.6°
C10C9HC9107.2°109.3°
C9C10C19110.7°108.1°
C11C9HC9107.2°109.3°
C9C11C12110.3°119.4°
C9C11O2125.1°120.3°
C10C19H191102.0°109.4°
C10C19H192115.1°109.5°
C10C19H193115.0°109.5°
C12C11O2124.6°120.3°
C11C12C13114.9°106.5°
C11C12H121110.2°110.1°
C11C12H122110.2°110.0°
C13C12H121110.2°110.0°
C13C12H122110.2°110.1°
C12C13C14107.4°107.5°
C12C13C17118.8°115.6°
C12C13C18107.6°109.9°
H121C12H122100.0°110.1°
C14C13C1796.7°103.8°
C14C13C18114.9°109.8°
C13C14C15101.4°102.5°
C13C14HC41106.1°110.5°
C17C13C18111.3°109.9°
C13C17C16102.2°105.0°
C13C17C20109.5°110.9°
C13C17O3105.6°110.1°
C13C18H181114.9°109.4°
C13C18H182110.2°109.5°
C13C18H183110.2°109.4°
C15C14HC41106.1°110.4°
C14C15C16107.6°103.1°
C14C15H151112.9°110.6°
C14C15H152112.9°110.7°
C16C15H151112.9°110.7°
C16C15H152112.9°110.7°
C15C16C17106.5°106.4°
C15C16H161113.3°110.1°
C15C16H162113.3°110.1°
H151C15H15297.5°110.7°
C17C16H161113.3°110.2°
C17C16H162113.3°109.9°
C16C17C20120.7°110.2°
C16C17O3112.6°110.2°
H161C16H16297.1°110.1°
C20C17O3105.3°110.3°
C17C20C21112.2°120.0°
C17C20O4108.9°120.0°
C17O3HO3105.6°106.9°
H181C18H182110.2°109.5°
H181C18H183110.2°109.5°
H182C18H183100.0°109.5°
H191C19H192115.1°109.5°
H191C19H193115.0°109.5°
H192C19H19395.4°109.5°
C21C20O4119.6°119.9°
C20C21O5104.3°120.0°
C20C21HC12114.2°120.0°
C20O4HO4108.9°106.8°
O5C21HC12114.2°120.0°
C21O5HO5104.3°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C10HC1180.0°179.8°
C1C2C3HC2180.0°180.0°
C1C2C3C40.5°2.7°
C1C2C3O1179.3°177.4°
C2C1C10C50.8°3.9°
C2C1C10C9123.6°126.6°
C2C1C10C19116.8°115.4°
C10C1C2C30.2°0.6°
C10C1C2HC2179.8°179.4°
C1C10C5C40.7°4.3°
C1C10C5C6179.9°176.1°
C1C10C5C9126.9°123.6°
C1C10C5C19113.1°119.4°
C1C10C9C8179.2°178.0°
C1C10C9C19114.6°117.9°
C1C10C9C1156.0°57.2°
C1C10C9HC962.5°63.1°
C1C10C19H191180.0°60.0°
C1C10C19H19254.7°180.0°
C1C10C19H19354.8°60.0°
HC1C1C2C3179.8°179.6°
HC1C1C2HC20.2°0.5°
HC1C1C10C5179.2°176.3°
HC1C1C10C956.4°53.6°
HC1C1C10C1963.2°64.4°
C2C3C4O1179.9°179.9°
C2C3C4C50.7°2.3°
C2C3C4HC4179.3°177.7°
HC2C2C3C4179.5°177.3°
HC2C2C3O10.7°2.6°
C3C4C5HC4180.0°180.0°
C3C4C5C6179.4°179.0°
C3C4C5C100.0°1.3°
O1C3C4C5179.2°177.8°
O1C3C4HC40.8°2.2°
C4C5C6C10179.4°179.7°
C4C5C6C7133.5°129.4°
C4C5C6HC618.3°9.6°
C4C5C6HC62101.2°111.0°
C4C5C10C9127.5°127.8°
C4C5C10C19112.4°115.2°
HC4C4C5C60.6°1.0°
HC4C4C5C10180.0°178.6°
C5C6C7HC61125.2°119.7°
C5C6C7HC62125.3°119.7°
C5C6HC61HC62119.5°120.5°
C5C6C7C848.9°54.4°
C5C6C7HC7176.3°65.5°
C5C6C7HC72174.2°174.4°
C6C5C10C953.0°52.5°
C6C5C10C1967.0°64.5°
C10C5C6C747.0°51.0°
C10C5C6HC61172.3°170.7°
C10C5C6HC6278.2°68.7°
C5C10C9C853.2°56.7°
C5C10C9C19119.4°116.8°
C5C10C9C11178.0°177.5°
C5C10C9HC963.5°62.2°
C5C10C19H19160.0°62.9°
C5C10C19H19265.3°57.1°
C5C10C19H193174.8°177.1°
C7C6HC61HC62119.6°120.4°
C6C7C8HC71125.3°119.9°
C6C7C8HC72125.3°120.0°
C6C7HC71HC72113.8°120.1°
C6C7C8C955.4°64.4°
C6C7C8C14178.1°176.9°
C6C7C8HC862.8°55.4°
HC61C6C7C8174.2°174.1°
HC61C6C7HC7148.9°54.2°
HC61C6C7HC7260.6°65.9°
HC62C6C7C876.3°65.3°
HC62C6C7HC71158.4°174.8°
HC62C6C7HC7248.9°54.7°
C8C7HC71HC72113.7°120.1°
C7C8C9C14125.6°121.2°
C7C8C9HC8118.2°119.9°
C7C8C14HC8119.1°121.4°
C7C8C9C1055.8°65.2°
C7C8C9C11177.1°173.9°
C7C8C9HC960.9°53.7°
C7C8C14C13178.8°173.5°
C7C8C14C1556.4°59.9°
C7C8C14HC4163.9°66.0°
HC71C7C8C969.9°55.5°
HC71C7C8C1452.9°63.2°
HC71C7C8HC8171.9°175.4°
HC72C7C8C9179.3°175.6°
HC72C7C8C1456.6°56.8°
HC72C7C8HC862.5°64.6°
C9C8C14HC8116.2°118.9°
C8C9C10C11124.8°120.8°
C8C9C10HC9116.7°118.9°
C8C9C11HC9116.2°120.2°
C8C9C10C1966.2°60.1°
C8C9C11C1252.5°46.8°
C8C9C11O2129.0°133.3°
C9C8C14C1356.5°66.8°
C9C8C14C15178.9°179.6°
C9C8C14HC4160.8°53.7°
C14C8C9C10178.7°173.6°
C14C8C9C1151.5°52.6°
C14C8C9HC964.6°67.5°
C8C14C13C1258.6°72.1°
C8C14C13C15131.9°121.9°
C8C14C13HC41117.4°120.5°
C8C14C13C17178.4°165.0°
C8C14C13C1861.1°47.5°
C8C14C15HC41120.3°125.8°
C8C14C15C16159.8°157.1°
C8C14C15H15175.0°38.7°
C8C14C15H15234.5°84.4°
HC8C8C9C1062.4°54.7°
HC8C8C9C1164.7°66.3°
HC8C8C9HC9179.1°173.5°
HC8C8C14C1359.7°52.1°
HC8C8C14C1562.6°61.5°
HC8C8C14HC41177.1°172.6°
C10C9C11HC9118.5°120.3°
C10C9C11C12177.8°166.3°
C10C9C11O23.8°13.8°
C9C10C19H19157.8°179.5°
C9C10C19H192176.9°60.5°
C9C10C19H19367.4°59.5°
C11C9C10C1958.6°60.7°
C9C11C12O2178.4°179.9°
C9C11C12C1358.1°49.8°
C9C11C12H121176.6°169.0°
C9C11C12H12267.1°69.5°
HC9C9C10C19177.1°179.0°
HC9C9C11C1263.7°73.4°
HC9C9C11O2114.8°106.5°
C10C19H191H192125.3°120.0°
C10C19H191H193125.2°120.0°
C10C19H192H193120.9°120.0°
C11C12C13H121125.3°119.3°
C11C12C13H122125.3°119.3°
C11C12H121H122116.1°121.5°
C11C12C13C1458.2°58.9°
C11C12C13C17166.3°174.3°
C11C12C13C1866.1°60.6°
O2C11C12C13123.5°130.3°
O2C11C12H1211.8°11.1°
O2C11C12H122111.3°110.4°
C13C12H121H122116.0°121.5°
C12C13C14C17123.0°122.9°
C12C13C14C18119.7°119.6°
C12C13C17C18125.8°125.1°
C12C13C14C15169.5°166.0°
C12C13C14HC4158.8°48.4°
C12C13C17C16161.1°145.2°
C12C13C17C2069.8°95.8°
C12C13C17O343.2°26.6°
C12C13C18H18160.4°54.6°
C12C13C18H182174.3°174.7°
C12C13C18H18364.8°65.4°
H121C12C13C14176.6°178.2°
H121C12C13C1768.4°66.4°
H121C12C13C1859.1°58.6°
H122C12C13C1467.1°60.3°
H122C12C13C1741.1°55.1°
H122C12C13C18168.6°179.9°
C14C13C17C18120.1°117.4°
C13C14C15HC41110.7°117.7°
C13C14C15C1630.8°40.7°
C13C14C15H151156.0°77.7°
C13C14C15H15294.5°159.1°
C14C13C17C1647.0°27.7°
C14C13C17C20176.1°146.8°
C14C13C17O370.9°90.9°
C14C13C18H181180.0°63.5°
C14C13C18H18254.7°56.6°
C14C13C18H18354.7°176.5°
C17C13C14C1546.4°43.0°
C17C13C14HC4164.3°74.5°
C13C17C16C1530.1°2.6°
C13C17C16C20121.7°119.5°
C13C17C16O3112.8°118.5°
C13C17C16H16195.2°116.7°
C13C17C16H162155.3°121.8°
C13C17C20O3113.1°122.2°
C17C13C18H18171.4°177.1°
C17C13C18H18253.9°57.1°
C17C13C18H183163.4°62.9°
C13C17C20C21113.6°122.7°
C13C17C20O4111.8°57.3°
C13C17O3HO3180.0°176.9°
C18C13C14C1570.8°74.4°
C18C13C14HC41178.5°168.0°
C18C13C17C1673.1°89.7°
C18C13C17C2056.0°29.3°
C18C13C17O3168.9°151.7°
C13C18H181H182125.3°120.1°
C13C18H181H183125.3°119.9°
C13C18H182H183116.1°119.9°
C14C15C16H151125.2°118.4°
C14C15C16H152125.3°118.4°
C14C15H151H152118.8°123.1°
C14C15C16C170.1°23.7°
C14C15C16H161125.4°143.1°
C14C15C16H162125.2°95.3°
HC41C14C15C1679.9°77.0°
HC41C14C15H15145.3°164.6°
HC41C14C15H152154.8°41.4°
C16C15H151H152118.9°123.2°
C15C16C17H161125.2°119.4°
C15C16C17H162125.3°119.2°
C15C16H161H162119.2°121.5°
C15C16C17C20151.7°122.1°
C15C16C17O382.8°115.9°
H151C15C16C17125.4°94.7°
H151C15C16H161109.4°24.8°
H151C15C16H1620.1°146.3°
H152C15C16C17125.1°142.1°
H152C15C16H1610.1°98.4°
H152C15C16H162109.6°23.1°
C17C16H161H162119.3°121.4°
C16C17C20O3128.8°121.9°
C16C17C20C21128.3°121.4°
C16C17C20O46.3°58.6°
C16C17O3HO369.2°61.5°
H161C16C17C2026.5°2.7°
H161C16C17O3152.0°124.7°
H162C16C17C2083.0°118.7°
H162C16C17O342.5°3.3°
C17C20C21O4129.3°180.0°
C17C20C21O5157.5°180.0°
C17C20C21HC1232.2°0.0°
C20C17O3HO364.2°60.4°
C17C20O4HO4180.0°180.0°
O3C17C20C210.5°0.5°
O3C17C20O4135.1°179.5°
H181C18H182H183116.0°120.1°
H191C19H192H193120.9°120.0°
C20C21O5HC12125.3°179.9°
C21C20O4HO449.3°0.0°
C20C21O5HO5180.0°179.9°
O4C20C21O573.2°0.0°
O4C20C21HC12161.5°180.0°
HC12C21O5HO554.8°0.0°

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon