OMY
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.50Å | |
| OCZ | CZ | sing | 1.36Å | 1.41Å | |
| CZ | CE2 | sing | 1.39Å | 1.40Å | Aromatic |
| CZ | CE1 | doub | 1.39Å | 1.43Å | Aromatic |
| CE2 | CD2 | doub | 1.38Å | 1.40Å | Aromatic |
| CD2 | CG | sing | 1.38Å | 1.42Å | Aromatic |
| CG | CD1 | doub | 1.38Å | 1.41Å | Aromatic |
| CG | CB | sing | 1.51Å | 1.59Å | |
| CD1 | CE1 | sing | 1.38Å | 1.42Å | Aromatic |
| CE1 | CL | sing | 1.74Å | 1.75Å | |
| C | O | doub | 1.21Å | 1.24Å | |
| C | CA | sing | 1.51Å | 1.61Å | |
| C | OXT | sing | 1.34Å | 1.36Å | |
| CA | CB | sing | 1.53Å | 1.60Å | |
| CB | ODE | sing | 1.43Å | 1.53Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| OCZ | HCZ | sing | 0.97Å | 0.95Å | |
| CE2 | HE2 | sing | 1.08Å | 1.08Å | |
| CD2 | HD2 | sing | 1.08Å | 1.08Å | |
| CD1 | HD1 | sing | 1.08Å | 1.08Å | |
| CB | HB | sing | 1.09Å | 1.10Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å | |
| ODE | HDE | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N | CA | C | 102.1° | 109.4° |
| N | CA | CB | 106.0° | 109.5° |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.4° | 111.0° |
| N | CA | HA | 122.3° | 109.5° |
| OCZ | CZ | CE2 | 117.0° | 120.1° |
| OCZ | CZ | CE1 | 124.9° | 120.0° |
| CZ | OCZ | HCZ | 109.5° | 114.0° |
| CE2 | CZ | CE1 | 118.1° | 119.9° |
| CZ | CE2 | CD2 | 119.8° | 119.9° |
| CZ | CE2 | HE2 | 120.1° | 120.0° |
| CZ | CE1 | CD1 | 121.1° | 119.9° |
| CZ | CE1 | CL | 120.5° | 120.0° |
| CE2 | CD2 | CG | 123.9° | 120.1° |
| CD2 | CE2 | HE2 | 120.1° | 120.0° |
| CE2 | CD2 | HD2 | 118.1° | 119.9° |
| CD2 | CG | CD1 | 116.6° | 120.1° |
| CD2 | CG | CB | 119.4° | 120.0° |
| CG | CD2 | HD2 | 118.0° | 119.9° |
| CD1 | CG | CB | 123.9° | 120.0° |
| CG | CD1 | CE1 | 120.5° | 120.0° |
| CG | CD1 | HD1 | 119.7° | 120.0° |
| CG | CB | CA | 99.8° | 109.5° |
| CG | CB | ODE | 103.7° | 109.5° |
| CG | CB | HB | 121.6° | 109.5° |
| CD1 | CE1 | CL | 118.3° | 120.1° |
| CE1 | CD1 | HD1 | 119.8° | 120.0° |
| O | C | CA | 117.5° | 120.0° |
| O | C | OXT | 117.3° | 120.0° |
| CA | C | OXT | 124.7° | 120.0° |
| C | CA | CB | 123.3° | 109.5° |
| C | CA | HA | 104.5° | 109.5° |
| C | OXT | HXT | 109.5° | 117.0° |
| CA | CB | ODE | 116.8° | 109.5° |
| CB | CA | HA | 100.5° | 109.4° |
| CA | CB | HB | 109.6° | 109.5° |
| ODE | CB | HB | 105.9° | 109.4° |
| CB | ODE | HDE | 109.5° | 114.0° |
| H | N | H2 | 109.5° | 111.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N | CA | CB | CG | 50.3° | 55.1° |
| N | CA | C | O | 25.0° | 20.0° |
| N | CA | C | CB | 118.5° | 120.0° |
| N | CA | C | HA | 128.2° | 120.1° |
| N | CA | C | OXT | 147.2° | 160.0° |
| N | CA | CB | HA | 128.1° | 120.0° |
| N | CA | CB | ODE | 60.6° | 65.0° |
| CA | N | H | H2 | 120.0° | 124.0° |
| N | CA | CB | HB | 179.0° | 175.1° |
| OCZ | CZ | CE2 | CE1 | 179.9° | 180.0° |
| OCZ | CZ | CE2 | CD2 | 179.9° | 180.0° |
| OCZ | CZ | CE1 | CD1 | 179.1° | 180.0° |
| OCZ | CZ | CE1 | CL | 0.1° | 0.0° |
| OCZ | CZ | CE2 | HE2 | 0.0° | 0.3° |
| CZ | CE2 | CD2 | HE2 | 180.0° | 179.7° |
| CZ | CE2 | CD2 | CG | 0.8° | 0.3° |
| CE2 | CZ | CE1 | CD1 | 0.8° | 0.0° |
| CE2 | CZ | CE1 | CL | 179.8° | 180.0° |
| CE2 | CZ | OCZ | HCZ | 128.8° | 89.9° |
| CZ | CE2 | CD2 | HD2 | 179.1° | 179.7° |
| CE1 | CZ | CE2 | CD2 | 0.1° | 0.0° |
| CZ | CE1 | CD1 | CG | 1.1° | 0.3° |
| CZ | CE1 | CD1 | CL | 179.0° | 180.0° |
| CE1 | CZ | OCZ | HCZ | 51.1° | 90.1° |
| CE1 | CZ | CE2 | HE2 | 179.9° | 179.7° |
| CZ | CE1 | CD1 | HD1 | 178.8° | 179.7° |
| CE2 | CD2 | CG | HD2 | 180.0° | 179.9° |
| CE2 | CD2 | CG | CD1 | 0.6° | 0.6° |
| CE2 | CD2 | CG | CB | 177.3° | 180.0° |
| CD2 | CG | CD1 | CB | 177.7° | 179.4° |
| CD2 | CG | CD1 | CE1 | 0.4° | 0.6° |
| CD2 | CG | CB | CA | 96.2° | 85.6° |
| CD2 | CG | CB | ODE | 24.7° | 34.4° |
| CG | CD2 | CE2 | HE2 | 179.2° | 180.0° |
| CD2 | CG | CD1 | HD1 | 179.5° | 179.4° |
| CD2 | CG | CB | HB | 143.5° | 154.4° |
| CG | CD1 | CE1 | HD1 | 180.0° | 180.0° |
| CG | CD1 | CE1 | CL | 179.9° | 179.7° |
| CD1 | CG | CB | CA | 81.5° | 95.0° |
| CD1 | CG | CB | ODE | 157.6° | 145.0° |
| CD1 | CG | CD2 | HD2 | 179.4° | 179.4° |
| CD1 | CG | CB | HB | 38.8° | 25.0° |
| CB | CG | CD1 | CE1 | 178.2° | 180.0° |
| CG | CB | CA | C | 166.9° | 175.0° |
| CG | CB | CA | ODE | 110.9° | 120.0° |
| CG | CB | CA | HB | 128.7° | 120.0° |
| CG | CB | ODE | HB | 129.1° | 120.0° |
| CG | CB | CA | HA | 77.8° | 65.0° |
| CB | CG | CD2 | HD2 | 2.7° | 0.0° |
| CB | CG | CD1 | HD1 | 1.8° | 0.0° |
| CG | CB | ODE | HDE | 50.4° | 60.0° |
| CL | CE1 | CD1 | HD1 | 0.2° | 0.3° |
| O | C | CA | OXT | 172.2° | 180.0° |
| O | C | CA | CB | 93.5° | 100.0° |
| O | C | CA | HA | 153.2° | 140.0° |
| O | C | OXT | HXT | 0.0° | 0.1° |
| C | CA | CB | HA | 115.2° | 120.0° |
| C | CA | CB | ODE | 56.0° | 55.0° |
| C | CA | N | H | 98.8° | 60.0° |
| C | CA | N | H2 | 21.3° | 176.0° |
| C | CA | CB | HB | 64.4° | 65.0° |
| CA | C | OXT | HXT | 172.2° | 180.0° |
| OXT | C | CA | CB | 94.3° | 80.0° |
| OXT | C | CA | HA | 19.0° | 40.0° |
| CA | CB | ODE | HB | 122.3° | 120.0° |
| CB | CA | N | H | 131.1° | 60.0° |
| CB | CA | N | H2 | 108.9° | 64.0° |
| CA | CB | ODE | HDE | 58.2° | 60.0° |
| ODE | CB | CA | HA | 171.3° | 175.0° |
| H | N | CA | HA | 17.2° | 180.0° |
| H2 | N | CA | HA | 137.2° | 56.0° |
| HA | CA | CB | HB | 50.9° | 55.0° |
| HE2 | CE2 | CD2 | HD2 | 0.8° | 0.1° |
| HB | CB | ODE | HDE | 179.5° | 180.0° |
