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GDX

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N2C2sing1.37Å1.37Å
N2HN21sing0.97Å1.00Å
N2HN22sing0.97Å1.00Å
C2N1sing1.36Å1.36Å
C2N3doub1.31Å1.35Å
N1C6sing1.35Å1.35Å
N1HN1sing0.97Å1.00Å
N3C4sing1.34Å1.33Å
C4C5doub1.40Å1.47ÅAromatic
C4N9sing1.37Å1.32ÅAromatic
C5C6sing1.41Å1.47Å
C5N7sing1.35Å1.34ÅAromatic
C6O6doub1.22Å1.26Å
N7C8doub1.30Å1.36ÅAromatic
C8N9sing1.36Å1.33ÅAromatic
C8H8sing1.08Å1.08Å
N9C1Dsing1.47Å1.35Å
C1DC2Dsing1.55Å1.33Å
C1DO4Dsing1.44Å1.44Å
C1DH1'sing1.09Å1.10Å
C2DO2Dsing1.43Å1.24Å
C2DC3Dsing1.55Å1.36Å
C2DH2'sing1.09Å1.10Å
O2DHO2Asing0.97Å0.95Å
C3DO3Dsing1.43Å1.46Å
C3DC4Dsing1.54Å1.33Å
C3DH3'sing1.09Å1.10Å
O3DHO3Asing0.97Å0.95Å
C4DO4Dsing1.44Å1.45Å
C4DC5Dsing1.53Å1.51Å
C4DH4'sing1.09Å1.10Å
C5DO5Dsing1.43Å1.42Å
C5DH5'2sing1.09Å1.10Å
C5DH5'1sing1.09Å1.10Å
O5DPAsing1.61Å1.62Å
PAO1Adoub1.48Å1.52Å
PAO2Asing1.61Å1.51Å
PAO3Asing1.61Å1.59Å
O2AHOA2sing0.97Å0.95Å
O3APBsing1.61Å1.59Å
PBO2Bsing1.61Å1.51Å
PBO3Bdoub1.48Å1.50Å
PBO1Bsing1.61Å1.62Å
O2BHOB2sing0.97Å0.95Å
O1BC1'sing1.43Å1.45Å
C1'O5'sing1.43Å1.45Å
C1'C2'sing1.53Å1.34Å
C1'HC1'sing1.09Å1.10Å
O5'C5'sing1.43Å1.46Å
C5'C6'sing1.51Å1.34Å
C5'C4'sing1.53Å1.35Å
C5'HC5'sing1.09Å1.10Å
C6'O6Adoub1.21Å1.22Å
C6'O6Bsing1.34Å1.22Å
O6BHO6Bsing0.97Å0.95Å
C2'O2'sing1.43Å1.23Å
C2'C3'sing1.53Å1.35Å
C2'HC2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C3'O3'sing1.43Å1.24Å
C3'C4'sing1.53Å1.35Å
C3'HC3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C4'O4'sing1.43Å1.23Å
C4'HC4'sing1.09Å1.10Å
O4'HO4'sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N2HN21120.0°120.1°
C2N2HN22120.0°119.9°
N2C2N1118.9°119.0°
N2C2N3119.2°119.1°
HN21N2HN22120.0°120.0°
N1C2N3121.9°121.9°
C2N1C6122.8°120.3°
C2N1HN1118.6°119.8°
C2N3C4121.1°121.1°
C6N1HN1118.6°119.9°
N1C6C5117.2°118.4°
N1C6O6123.3°120.8°
N3C4C5119.9°119.7°
N3C4N9138.5°134.2°
C5C4N9101.6°106.1°
C4C5C6117.0°118.6°
C4C5N7108.4°107.3°
C4N9C8114.7°107.5°
C4N9C1D124.8°126.3°
C6C5N7134.5°134.2°
C5C6O6119.5°120.8°
C5N7C8108.3°109.4°
N7C8N9106.9°109.8°
N7C8H8126.5°125.1°
N9C8H8126.5°125.1°
C8N9C1D119.3°126.2°
N9C1DC2D117.5°110.6°
N9C1DO4D121.5°110.6°
N9C1DH1'91.3°110.5°
C2DC1DO4D105.7°103.5°
C2DC1DH1'112.5°110.6°
C1DC2DO2D108.3°110.9°
C1DC2DC3D109.1°102.1°
C1DC2DH2'112.9°110.9°
O4DC1DH1'107.1°110.8°
C1DO4DC4D104.8°107.0°
O2DC2DC3D115.8°110.9°
O2DC2DH2'105.8°110.8°
C2DO2DHO2A109.5°114.0°
C3DC2DH2'105.0°110.9°
C2DC3DO3D112.7°110.5°
C2DC3DC4D109.3°104.1°
C2DC3DH3'106.3°110.5°
O3DC3DC4D106.1°110.5°
O3DC3DH3'109.5°110.4°
C3DO3DHO3A109.5°114.0°
C4DC3DH3'113.0°110.6°
C3DC4DO4D106.1°107.3°
C3DC4DC5D111.3°109.9°
C3DC4DH4'110.8°109.9°
O4DC4DC5D110.3°109.9°
O4DC4DH4'111.8°109.9°
C5DC4DH4'106.7°110.0°
C4DC5DO5D110.6°109.5°
C4DC5DH5'2109.1°109.5°
C4DC5DH5'1109.1°109.5°
O5DC5DH5'2109.1°109.5°
O5DC5DH5'1109.1°109.4°
C5DO5DPA123.5°123.0°
H5'2C5DH5'1109.8°109.5°
O5DPAO1A110.4°109.5°
O5DPAO2A105.7°109.5°
O5DPAO3A102.9°109.5°
O1APAO2A121.0°109.4°
O1APAO3A108.2°109.5°
O2APAO3A107.1°109.5°
PAO2AHOA2109.5°114.0°
PAO3APB120.0°134.0°
O3APBO2B109.0°109.5°
O3APBO3B108.9°109.5°
O3APBO1B109.4°109.4°
O2BPBO3B108.5°109.5°
O2BPBO1B109.2°109.5°
PBO2BHOB2109.5°114.0°
O3BPBO1B111.8°109.5°
PBO1BC1'112.3°123.0°
O1BC1'O5'106.4°109.5°
O1BC1'C2'110.5°109.5°
O1BC1'HC1'111.3°109.4°
O5'C1'C2'110.9°109.4°
O5'C1'HC1'110.9°109.5°
C1'O5'C5'109.9°114.1°
C2'C1'HC1'106.9°109.5°
C1'C2'O2'111.0°109.5°
C1'C2'C3'111.5°109.1°
C1'C2'HC2'107.5°109.5°
O5'C5'C6'108.3°109.5°
O5'C5'C4'111.1°109.4°
O5'C5'HC5'109.4°109.4°
C6'C5'C4'110.0°109.5°
C6'C5'HC5'110.5°109.5°
C5'C6'O6A119.9°120.0°
C5'C6'O6B121.8°120.0°
C4'C5'HC5'107.6°109.5°
C5'C4'C3'112.6°109.2°
C5'C4'O4'109.5°109.5°
C5'C4'HC4'108.1°109.6°
O6AC6'O6B118.3°120.0°
C6'O6BHO6B109.5°117.0°
O2'C2'C3'110.9°109.6°
O2'C2'HC2'108.1°109.5°
C2'O2'HO2'109.5°114.0°
C3'C2'HC2'107.6°109.6°
C2'C3'O3'110.3°109.5°
C2'C3'C4'110.0°109.0°
C2'C3'HC3'109.4°109.6°
O3'C3'C4'112.1°109.5°
O3'C3'HC3'107.3°109.5°
C3'O3'HO3'109.5°114.0°
C4'C3'HC3'107.6°109.6°
C3'C4'O4'111.8°109.5°
C3'C4'HC4'105.6°109.5°
O4'C4'HC4'109.0°109.6°
C4'O4'HO4'109.5°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N2HN21HN22180.0°179.7°
N2C2N1N3179.9°179.8°
N2C2N1C6179.7°180.0°
N2C2N1HN10.3°0.0°
N2C2N3C4179.4°180.0°
HN21N2C2N1179.9°0.0°
HN21N2C2N30.0°179.8°
HN22N2C2N10.1°179.7°
HN22N2C2N3180.0°0.6°
C2N1C6HN1180.0°180.0°
N1C2N3C40.6°0.2°
C2N1C6C50.1°0.0°
C2N1C6O6179.7°180.0°
N3C2N1C60.3°0.2°
N3C2N1HN1179.7°179.7°
C2N3C4C50.7°0.1°
C2N3C4N9178.8°180.0°
N1C6C5C40.2°0.3°
N1C6C5O6179.6°180.0°
N1C6C5N7179.9°179.9°
HN1N1C6C5179.9°180.0°
HN1N1C6O60.3°0.0°
N3C4C5N9178.7°179.9°
N3C4C5C60.5°0.3°
N3C4C5N7179.6°180.0°
N3C4N9C8179.7°180.0°
N3C4N9C1D12.6°0.0°
C4C5C6N7179.9°179.6°
C4C5C6O6179.8°179.7°
C4C5N7C80.1°0.0°
C5C4N9C81.4°0.0°
C5C4N9C1D169.0°180.0°
N9C4C5C6179.2°179.7°
N9C4C5N70.8°0.0°
C4N9C8N71.4°0.0°
C4N9C8C1D168.4°180.0°
C4N9C8H8178.6°180.0°
C4N9C1DC2D124.9°85.0°
C4N9C1DO4D102.4°160.9°
C4N9C1DH1'8.6°37.9°
C6C5N7C8180.0°179.7°
N7C5C6O60.3°0.1°
C5N7C8N90.7°0.0°
C5N7C8H8179.3°180.0°
N7C8N9H8180.0°180.0°
N7C8N9C1D169.8°180.0°
C8N9C1DC2D68.0°95.0°
C8N9C1DO4D64.7°19.1°
C8N9C1DH1'175.7°142.2°
H8C8N9C1D10.2°0.0°
N9C1DC2DO4D139.4°118.5°
N9C1DC2DH1'104.0°122.8°
N9C1DO4DH1'102.5°122.9°
N9C1DC2DO2D72.3°86.3°
N9C1DC2DC3D160.8°155.6°
N9C1DC2DH2'44.5°37.4°
N9C1DO4DC4D149.5°158.6°
C2DC1DO4DH1'120.2°118.6°
C1DC2DO2DC3D122.9°112.7°
C1DC2DO2DH2'121.3°123.7°
C1DC2DC3DH2'121.3°118.2°
C1DC2DO2DHO2A180.0°180.0°
C1DC2DC3DO3D94.3°97.8°
C1DC2DC3DC4D23.4°20.9°
C1DC2DC3DH3'145.7°139.7°
C2DC1DO4DC4D12.1°40.1°
O4DC1DC2DO2D148.3°155.2°
O4DC1DC2DC3D21.4°37.0°
O4DC1DC2DH2'94.9°81.2°
C1DO4DC4DC3D1.4°26.5°
C1DO4DC4DC5D119.2°146.0°
C1DO4DC4DH4'122.3°92.9°
H1'C1DC2DO2D31.7°36.5°
H1'C1DC2DC3D95.2°81.7°
H1'C1DC2DH2'148.5°160.1°
H1'C1DO4DC4D108.0°78.5°
O2DC2DC3DH2'116.2°123.6°
O2DC2DC3DO3D28.2°20.4°
O2DC2DC3DC4D145.9°139.1°
O2DC2DC3DH3'91.8°102.1°
C3DC2DO2DHO2A57.1°67.3°
C2DC3DO3DC4D119.6°114.7°
C2DC3DO3DH3'118.2°122.6°
C2DC3DC4DH3'118.2°118.7°
C2DC3DO3DHO3A180.0°61.5°
C2DC3DC4DO4D14.4°2.0°
C2DC3DC4DC5D105.6°121.5°
C2DC3DC4DH4'135.9°117.4°
H2'C2DO2DHO2A58.7°56.3°
H2'C2DC3DO3D144.4°144.0°
H2'C2DC3DC4D97.9°97.3°
H2'C2DC3DH3'24.4°21.5°
O3DC3DC4DH3'120.0°122.6°
O3DC3DC4DO4D107.4°120.7°
O3DC3DC4DC5D132.6°119.8°
O3DC3DC4DH4'14.1°1.3°
C4DC3DO3DHO3A60.4°176.2°
C3DC4DO4DC5D120.6°119.4°
C3DC4DO4DH4'120.9°119.4°
C3DC4DC5DH4'121.0°121.1°
C3DC4DC5DO5D27.6°175.0°
C3DC4DC5DH5'2147.6°55.0°
C3DC4DC5DH5'192.4°65.1°
H3'C3DO3DHO3A61.8°61.1°
H3'C3DC4DO4D132.6°116.7°
H3'C3DC4DC5D12.6°2.8°
H3'C3DC4DH4'105.9°123.9°
O4DC4DC5DH4'121.6°121.1°
O4DC4DC5DO5D89.9°67.1°
O4DC4DC5DH5'230.1°172.8°
O4DC4DC5DH5'1150.1°52.8°
C4DC5DO5DH5'2120.0°120.0°
C4DC5DO5DH5'1120.0°119.9°
C4DC5DH5'2H5'1119.6°120.0°
C4DC5DO5DPA159.5°180.0°
H4'C4DC5DO5D148.5°53.9°
H4'C4DC5DH5'291.5°66.1°
H4'C4DC5DH5'128.5°173.8°
O5DC5DH5'2H5'1119.6°120.0°
C5DO5DPAO1A10.1°55.0°
C5DO5DPAO2A142.6°65.0°
C5DO5DPAO3A105.2°175.0°
H5'2C5DO5DPA39.6°60.0°
H5'1C5DO5DPA80.5°60.1°
O5DPAO1AO2A124.1°120.0°
O5DPAO1AO3A111.9°120.0°
O5DPAO2AO3A109.2°120.0°
O5DPAO2AHOA2126.3°60.0°
O5DPAO3APB96.0°160.0°
O1APAO2AO3A124.5°120.0°
O1APAO2AHOA20.0°180.0°
O1APAO3APB20.9°40.0°
O2APAO3APB152.8°80.0°
O3APAO2AHOA2124.5°60.0°
PAO3APBO2B179.1°80.0°
PAO3APBO3B60.9°40.0°
PAO3APBO1B61.6°160.0°
O3APBO2BO3B118.5°120.0°
O3APBO2BO1B119.4°120.0°
O3APBO3BO1B121.0°120.0°
O3APBO2BHOB2118.5°60.0°
O3APBO1BC1'112.4°175.0°
O2BPBO3BO1B120.5°120.0°
O2BPBO1BC1'128.4°65.0°
O3BPBO2BHOB20.0°180.0°
O3BPBO1BC1'8.3°55.0°
O1BPBO2BHOB2122.1°60.0°
PBO1BC1'O5'86.8°89.9°
PBO1BC1'C2'152.7°150.1°
PBO1BC1'HC1'34.1°30.0°
O1BC1'O5'C2'120.2°120.0°
O1BC1'O5'HC1'121.2°120.0°
O1BC1'C2'HC1'121.3°120.0°
O1BC1'O5'C5'70.9°58.9°
O1BC1'C2'O2'175.9°177.7°
O1BC1'C2'C3'59.8°62.4°
O1BC1'C2'HC2'57.8°57.6°
O5'C1'C2'HC1'121.0°120.0°
C1'O5'C5'C6'168.3°178.9°
C1'O5'C5'C4'47.4°61.1°
C1'O5'C5'HC5'71.3°58.9°
O5'C1'C2'O2'66.3°62.3°
O5'C1'C2'C3'57.9°57.6°
O5'C1'C2'HC2'175.6°177.6°
C2'C1'O5'C5'49.3°61.1°
C1'C2'O2'C3'124.6°119.7°
C1'C2'O2'HC2'117.7°120.1°
C1'C2'C3'HC2'117.6°119.9°
C1'C2'O2'HO2'180.0°60.0°
C1'C2'C3'O3'172.6°176.8°
C1'C2'C3'C4'63.3°57.0°
C1'C2'C3'HC3'54.7°63.0°
HC1'C1'O5'C5'167.9°178.9°
HC1'C1'C2'O2'54.6°57.7°
HC1'C1'C2'C3'178.9°177.6°
HC1'C1'C2'HC2'63.4°62.4°
O5'C5'C6'C4'121.6°119.9°
O5'C5'C6'HC5'119.7°120.0°
O5'C5'C4'HC5'119.7°119.9°
O5'C5'C6'O6A56.3°5.0°
O5'C5'C6'O6B123.1°174.9°
O5'C5'C4'C3'54.2°57.6°
O5'C5'C4'O4'179.3°177.5°
O5'C5'C4'HC4'62.1°62.3°
C6'C5'C4'HC5'120.4°120.1°
C5'C6'O6AO6B179.4°179.9°
C5'C6'O6BHO6B179.4°180.0°
C6'C5'C4'C3'174.1°177.6°
C6'C5'C4'O4'60.8°62.5°
C6'C5'C4'HC4'57.8°57.7°
C4'C5'C6'O6A65.3°115.0°
C4'C5'C6'O6B115.3°65.1°
C5'C4'C3'C2'61.6°57.0°
C5'C4'C3'O3'175.3°176.9°
C5'C4'C3'O4'123.8°119.9°
C5'C4'C3'HC4'117.8°120.0°
C5'C4'C3'HC3'57.5°62.9°
C5'C4'O4'HC4'118.1°120.2°
C5'C4'O4'HO4'180.0°60.0°
HC5'C5'C6'O6A176.1°125.0°
HC5'C5'C6'O6B3.4°55.0°
HC5'C5'C4'C3'65.5°62.3°
HC5'C5'C4'O4'59.6°57.5°
HC5'C5'C4'HC4'178.2°177.7°
O6AC6'O6BHO6B0.0°0.1°
O2'C2'C3'HC2'118.1°120.2°
O2'C2'C3'O3'63.1°56.9°
O2'C2'C3'C4'61.0°62.9°
O2'C2'C3'HC3'179.0°177.1°
C3'C2'O2'HO2'55.4°179.7°
C2'C3'O3'C4'123.0°119.5°
C2'C3'O3'HC3'119.2°120.2°
C2'C3'C4'HC3'119.2°120.0°
C2'C3'O3'HO3'180.0°60.0°
C2'C3'C4'O4'174.6°176.9°
C2'C3'C4'HC4'56.2°62.9°
HC2'C2'O2'HO2'62.3°60.1°
HC2'C2'C3'O3'55.0°63.3°
HC2'C2'C3'C4'179.1°176.9°
HC2'C2'C3'HC3'62.9°56.9°
O3'C3'C4'HC3'117.7°120.2°
O3'C3'C4'O4'51.5°63.2°
O3'C3'C4'HC4'66.9°56.9°
C4'C3'O3'HO3'57.1°179.6°
C3'C4'O4'HC4'116.4°120.1°
C3'C4'O4'HO4'54.5°179.6°
HC3'C3'O3'HO3'60.8°60.2°
HC3'C3'C4'O4'66.3°56.9°
HC3'C3'C4'HC4'175.3°177.1°
HC4'C4'O4'HO4'61.9°60.2°

219869

PDB entries from 2024-05-15

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