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B3D

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OE1CDsing1.34Å1.26Å
OE1HE1sing0.97Å0.95Å
CDOE2doub1.21Å1.25Å
CDCGsing1.51Å1.50Å
CGCAsing1.53Å1.53Å
CGHG3sing1.09Å1.10Å
CGHG2sing1.09Å1.10Å
CANsing1.47Å1.46Å
CACBsing1.53Å1.53Å
CAHAsing1.09Å1.10Å
NHsing1.01Å1.00Å
NH2sing1.01Å1.00Å
CBCsing1.51Å1.51Å
CBHB1sing1.09Å1.10Å
CBHB2sing1.09Å1.10Å
COXTsing1.34Å1.34Å
COdoub1.21Å1.24Å
OXTHXTsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CDOE1HE1109.5°117.0°
OE1CDOE2121.7°120.0°
OE1CDCG122.1°120.0°
OE2CDCG116.2°120.0°
CDCGCA115.8°109.5°
CDCGHG3107.9°109.5°
CDCGHG2107.9°109.4°
CACGHG3107.9°109.5°
CACGHG2107.9°109.5°
CGCAN113.8°109.5°
CGCACB106.6°109.5°
CGCAHA108.6°109.4°
HG3CGHG2109.4°109.4°
NCACB109.3°109.4°
NCAHA109.6°109.5°
CANH109.5°111.0°
CANH2109.5°111.0°
CBCAHA108.7°109.5°
CACBC108.1°109.5°
CACBHB1109.8°109.5°
CACBHB2109.8°109.4°
HNH2109.4°111.0°
CCBHB1109.8°109.5°
CCBHB2109.8°109.5°
CBCOXT115.3°120.0°
CBCO120.9°120.0°
HB1CBHB2109.5°109.5°
OXTCO123.8°119.9°
COXTHXT109.5°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OE1CDOE2CG178.2°180.0°
OE1CDCGCA63.7°180.0°
OE1CDCGHG357.2°60.0°
OE1CDCGHG2175.3°60.0°
HE1OE1CDOE20.0°0.1°
HE1OE1CDCG178.1°180.0°
OE2CDCGCA118.1°0.0°
OE2CDCGHG3121.0°120.0°
OE2CDCGHG22.9°120.0°
CDCGCAHG3121.0°120.0°
CDCGCAHG2120.9°120.0°
CDCGHG3HG2117.1°120.0°
CDCGCAN30.8°65.0°
CDCGCACB151.4°175.0°
CDCGCAHA91.6°55.0°
CACGHG3HG2117.1°120.0°
CGCANCB119.1°120.0°
CGCANHA121.9°120.0°
CGCACBHA116.9°120.0°
CGCANH180.0°63.9°
CGCANH260.0°60.0°
CGCACBC145.7°175.0°
CGCACBHB125.9°65.0°
CGCACBHB294.5°55.0°
HG3CGCAN151.8°55.0°
HG3CGCACB87.6°65.0°
HG3CGCAHA29.3°175.0°
HG2CGCAN90.1°175.0°
HG2CGCACB30.5°55.0°
HG2CGCAHA147.5°65.0°
NCACBHA119.6°120.0°
CANHH2120.0°124.0°
NCACBC90.9°65.0°
NCACBHB1149.4°55.0°
NCACBHB229.0°175.0°
CBCANH60.9°176.0°
CBCANH259.1°60.0°
CACBCHB1119.8°120.0°
CACBCHB2119.8°120.0°
CACBHB1HB2120.6°120.0°
CACBCOXT96.8°180.0°
CACBCO82.3°0.0°
HACANH58.2°56.1°
HACANH2178.1°180.0°
HACACBC28.8°55.0°
HACACBHB191.0°175.0°
HACACBHB2148.6°65.0°
CCBHB1HB2120.6°120.0°
CBCOXTO179.1°180.0°
CBCOXTHXT179.0°180.0°
HB1CBCOXT143.4°60.0°
HB1CBCO37.5°120.0°
HB2CBCOXT23.0°60.0°
HB2CBCO157.9°119.9°
OCOXTHXT0.0°0.0°

219140

PDB entries from 2024-05-01

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