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AVV

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2APAdoub1.48Å1.52Å
PAO3sing1.61Å1.63Å
PAO5'Asing1.61Å1.62Å
PAO1Asing1.61Å1.51Å
O2NPNdoub1.48Å1.56Å
O1NPNsing1.61Å1.55Å
PNO3sing1.61Å1.64Å
PNO5'Nsing1.61Å1.65Å
C2AF1Asing1.35Å1.36Å
C6AN1Adoub1.33Å1.35ÅAromatic
N1AC2Asing1.32Å1.37ÅAromatic
O1AHAO1sing0.97Å0.95Å
O1NHNO1sing0.97Å0.95Å
N3AC2Adoub1.32Å1.34ÅAromatic
C4AN3Asing1.33Å1.34ÅAromatic
C5AC4Adoub1.40Å1.38ÅAromatic
N9AC4Asing1.37Å1.32ÅAromatic
N7AC5Asing1.36Å1.36ÅAromatic
C5AC6Asing1.41Å1.39ÅAromatic
N6AC6Asing1.38Å1.35Å
N6AHAN6sing0.97Å1.00Å
N6AHANAsing0.97Å1.00Å
N7AC8Adoub1.30Å1.36ÅAromatic
C8AN9Asing1.36Å1.34ÅAromatic
C8AHC8sing1.08Å1.08Å
N9AC1'Asing1.46Å1.47Å
C2'AC1'Asing1.54Å1.52Å
C1'AO4'Asing1.44Å1.43Å
C1'AHC1'sing1.09Å1.10Å
O4'NC1'Nsing1.44Å1.45Å
C1'NC2'Nsing1.55Å1.51Å
C1'NHC1Asing1.09Å1.10Å
C1'NHC1Bsing1.09Å1.10Å
C2'AC3'Asing1.55Å1.53Å
C2'AO2'Asing1.43Å1.44Å
C2'AHC2'sing1.09Å1.10Å
O2'AHO2'sing0.97Å0.95Å
C3'NC2'Nsing1.55Å1.54Å
C2'NO2'Nsing1.43Å1.42Å
C2'NHC2Asing1.09Å1.10Å
O2'NHO2Asing0.97Å0.95Å
C3'AC4'Asing1.54Å1.52Å
C3'AO3'Asing1.43Å1.45Å
C3'AHC3'sing1.09Å1.10Å
O3'AHO3'sing0.97Å0.95Å
C4'NC3'Nsing1.54Å1.53Å
O3'NC3'Nsing1.43Å1.43Å
C3'NHC3Asing1.09Å1.10Å
O3'NHO3Asing0.97Å0.95Å
C5'AC4'Asing1.53Å1.50Å
O4'AC4'Asing1.44Å1.42Å
C4'AHC4'sing1.09Å1.10Å
O4'NC4'Nsing1.44Å1.42Å
C5'NC4'Nsing1.53Å1.52Å
C4'NHC4Asing1.09Å1.10Å
C5'AO5'Asing1.43Å1.41Å
C5'AHC5'sing1.09Å1.10Å
C5'AHC5Asing1.09Å1.10Å
O5'NC5'Nsing1.43Å1.42Å
C5'NHC5Bsing1.09Å1.10Å
C5'NHC5Csing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2APAO3105.4°109.4°
O2APAO5'A114.3°109.4°
O2APAO1A118.4°109.4°
O3PAO5'A92.0°109.5°
O3PAO1A115.4°109.5°
PAO3PN124.6°134.1°
O5'APAO1A108.4°109.5°
PAO5'AC5'A125.5°123.0°
PAO1AHAO1109.5°113.9°
O2NPNO1N118.6°109.5°
O2NPNO3107.5°109.5°
O2NPNO5'N111.8°109.5°
O1NPNO3105.1°109.5°
O1NPNO5'N110.0°109.5°
PNO1NHNO1109.5°114.0°
O3PNO5'N102.3°109.5°
PNO5'NC5'N126.3°123.0°
F1AC2AN1A122.9°118.8°
F1AC2AN3A117.0°118.8°
C6AN1AC2A121.3°121.2°
N1AC6AC5A118.9°118.5°
N1AC6AN6A119.7°120.8°
N1AC2AN3A120.2°122.4°
C2AN3AC4A119.5°120.6°
N3AC4AC5A122.4°119.1°
N3AC4AN9A129.0°134.9°
C5AC4AN9A108.6°106.0°
C4AC5AN7A106.0°107.1°
C4AC5AC6A117.7°118.2°
C4AN9AC8A110.0°107.4°
C4AN9AC1'A117.3°126.3°
N7AC5AC6A136.3°134.6°
C5AN7AC8A108.7°109.4°
C5AC6AN6A121.3°120.7°
C6AN6AHAN6109.5°120.0°
C6AN6AHANA109.5°119.9°
HAN6N6AHANA109.5°120.0°
N7AC8AN9A106.8°110.0°
N7AC8AHC8126.6°125.0°
N9AC8AHC8126.6°125.0°
C8AN9AC1'A132.7°126.3°
N9AC1'AC2'A115.6°110.4°
N9AC1'AO4'A101.8°110.4°
N9AC1'AHC1'110.8°110.3°
C2'AC1'AO4'A109.7°104.8°
C2'AC1'AHC1'103.0°110.5°
C1'AC2'AC3'A104.6°104.1°
C1'AC2'AO2'A108.3°110.5°
C1'AC2'AHC2'114.7°110.5°
O4'AC1'AHC1'116.5°110.4°
C1'AO4'AC4'A109.6°105.2°
O4'NC1'NC2'N103.8°103.5°
O4'NC1'NHC1A111.4°110.6°
O4'NC1'NHC1B111.4°110.8°
C1'NO4'NC4'N112.9°107.0°
C2'NC1'NHC1A111.4°110.6°
C2'NC1'NHC1B111.4°110.6°
C1'NC2'NC3'N102.0°102.1°
C1'NC2'NO2'N109.5°110.9°
C1'NC2'NHC2A116.8°110.9°
HC1AC1'NHC1B107.4°110.6°
C3'AC2'AO2'A113.5°110.5°
C3'AC2'AHC2'109.8°110.5°
C2'AC3'AC4'A105.7°104.1°
C2'AC3'AO3'A115.9°110.5°
C2'AC3'AHC3'106.8°110.6°
O2'AC2'AHC2'106.1°110.6°
C2'AO2'AHO2'109.5°114.0°
C3'NC2'NO2'N116.4°110.9°
C3'NC2'NHC2A110.0°110.9°
C2'NC3'NC4'N103.8°104.2°
C2'NC3'NO3'N110.2°110.5°
C2'NC3'NHC3A112.0°110.5°
O2'NC2'NHC2A102.6°110.8°
C2'NO2'NHO2A109.5°114.0°
C4'AC3'AO3'A106.6°110.5°
C4'AC3'AHC3'116.1°110.5°
C3'AC4'AC5'A108.2°110.4°
C3'AC4'AO4'A109.9°104.8°
C3'AC4'AHC4'111.6°110.4°
O3'AC3'AHC3'106.0°110.5°
C3'AO3'AHO3'109.5°114.0°
C4'NC3'NO3'N107.4°110.6°
C4'NC3'NHC3A114.6°110.5°
C3'NC4'NO4'N104.5°107.3°
C3'NC4'NC5'N117.6°109.8°
C3'NC4'NHC4A105.6°109.9°
O3'NC3'NHC3A108.7°110.4°
C3'NO3'NHO3A109.5°114.0°
C5'AC4'AO4'A113.7°110.5°
C5'AC4'AHC4'107.6°110.3°
C4'AC5'AO5'A94.8°109.5°
C4'AC5'AHC5'114.7°109.5°
C4'AC5'AHC5A114.7°109.4°
O4'AC4'AHC4'105.8°110.4°
O4'NC4'NC5'N102.9°110.0°
O4'NC4'NHC4A119.8°109.9°
C5'NC4'NHC4A107.2°109.9°
C4'NC5'NO5'N106.8°109.4°
C4'NC5'NHC5B110.4°109.5°
C4'NC5'NHC5C110.3°109.5°
O5'AC5'AHC5'114.7°109.5°
O5'AC5'AHC5A114.7°109.5°
HC5'C5'AHC5A103.8°109.5°
O5'NC5'NHC5B110.4°109.5°
O5'NC5'NHC5C110.4°109.4°
HC5BC5'NHC5C108.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2APAO3O5'A115.9°120.0°
O2APAO3O1A132.6°119.9°
O2APAO5'AO1A134.5°120.0°
O2APAO3PN56.7°40.0°
O2APAO1AHAO10.0°180.0°
O2APAO5'AC5'A8.0°55.0°
O3PAO5'AO1A117.6°120.1°
PAO3PNO2N32.0°45.0°
PAO3PNO1N159.2°75.0°
PAO3PNO5'N85.9°165.0°
O3PAO1AHAO1126.2°60.1°
O3PAO5'AC5'A99.9°175.0°
O5'APAO3PN59.2°160.0°
O5'APAO1AHAO1132.4°60.0°
PAO5'AC5'AC4'A115.6°180.0°
PAO5'AC5'AHC5'4.4°60.0°
PAO5'AC5'AHC5A124.4°60.0°
O1APAO3PN170.7°79.9°
O1APAO5'AC5'A142.5°64.9°
O2NPNO1NO3120.1°120.0°
O2NPNO1NO5'N130.5°120.0°
O2NPNO3O5'N117.9°120.0°
O2NPNO1NHNO10.0°180.0°
O2NPNO5'NC5'N164.8°55.0°
O1NPNO3O5'N114.9°120.0°
O1NPNO5'NC5'N61.2°65.0°
O3PNO1NHNO1120.1°60.0°
O3PNO5'NC5'N50.0°175.0°
O5'NPNO1NHNO1130.5°60.0°
PNO5'NC5'NC4'N93.5°180.0°
PNO5'NC5'NHC5B26.5°60.0°
PNO5'NC5'NHC5C146.5°60.0°
F1AC2AN1AC6A179.8°180.0°
F1AC2AN1AN3A179.5°180.0°
F1AC2AN3AC4A179.9°180.0°
C6AN1AC2AN3A0.3°0.0°
N1AC6AC5AC4A0.1°0.0°
N1AC6AC5AN7A179.9°179.9°
N1AC6AC5AN6A179.8°179.9°
N1AC6AN6AHAN60.0°180.0°
N1AC6AN6AHANA120.0°0.0°
N1AC2AN3AC4A0.3°0.0°
C2AN1AC6AC5A0.1°0.0°
C2AN1AC6AN6A179.9°179.9°
C2AN3AC4AC5A0.2°0.0°
C2AN3AC4AN9A179.6°179.9°
N3AC4AC5AN9A179.5°180.0°
N3AC4AC5AN7A179.9°180.0°
N3AC4AC5AC6A0.0°0.0°
N3AC4AN9AC8A179.6°180.0°
N3AC4AN9AC1'A2.0°0.1°
C4AC5AN7AC6A179.9°179.9°
C4AC5AC6AN6A179.7°180.0°
C4AC5AN7AC8A0.2°0.0°
C5AC4AN9AC8A0.9°0.0°
C5AC4AN9AC1'A178.5°180.0°
N9AC4AC5AN7A0.4°0.0°
N9AC4AC5AC6A179.5°179.9°
C4AN9AC8AN7A1.0°0.0°
C4AN9AC8AC1'A177.1°180.0°
C4AN9AC8AHC8179.0°180.0°
C4AN9AC1'AC2'A169.3°88.1°
C4AN9AC1'AO4'A71.9°156.5°
C4AN9AC1'AHC1'52.6°34.3°
N7AC5AC6AN6A0.1°0.2°
C5AN7AC8AN9A0.8°0.0°
C5AN7AC8AHC8179.2°180.0°
C5AC6AN6AHAN6179.8°0.0°
C5AC6AN6AHANA60.2°180.0°
C6AC5AN7AC8A179.9°179.9°
C6AN6AHAN6HANA120.0°180.0°
N7AC8AN9AHC8180.0°180.0°
N7AC8AN9AC1'A178.1°180.0°
C8AN9AC1'AC2'A13.8°91.9°
C8AN9AC1'AO4'A105.0°23.5°
C8AN9AC1'AHC1'130.4°145.8°
HC8C8AN9AC1'A1.9°0.0°
N9AC1'AC2'AO4'A114.4°118.8°
N9AC1'AC2'AHC1'120.9°122.3°
N9AC1'AO4'AHC1'120.6°122.2°
N9AC1'AC2'AC3'A120.6°142.8°
N9AC1'AC2'AO2'A118.1°98.6°
N9AC1'AC2'AHC2'0.3°24.2°
N9AC1'AO4'AC4'A128.2°159.4°
C2'AC1'AO4'AHC1'116.4°118.9°
C1'AC2'AC3'AO2'A117.9°118.7°
C1'AC2'AC3'AHC2'123.6°118.6°
C1'AC2'AO2'AHC2'123.7°122.7°
C1'AC2'AO2'AHO2'180.0°180.0°
C1'AC2'AC3'AC4'A4.8°0.0°
C1'AC2'AC3'AO3'A113.1°118.7°
C1'AC2'AC3'AHC3'129.1°118.6°
C2'AC1'AO4'AC4'A5.2°40.5°
O4'AC1'AC2'AC3'A6.2°23.9°
O4'AC1'AC2'AO2'A127.5°142.6°
O4'AC1'AC2'AHC2'114.1°94.6°
C1'AO4'AC4'AC3'A2.0°40.5°
C1'AO4'AC4'AC5'A123.5°159.4°
C1'AO4'AC4'AHC4'118.6°78.4°
HC1'C1'AC2'AC3'A118.5°94.9°
HC1'C1'AC2'AO2'A2.8°23.8°
HC1'C1'AC2'AHC2'121.2°146.5°
HC1'C1'AO4'AC4'A111.2°78.4°
O4'NC1'NC2'NHC1A120.0°118.5°
O4'NC1'NC2'NHC1B120.0°118.6°
O4'NC1'NHC1AHC1B122.3°123.1°
O4'NC1'NC2'NC3'N33.3°37.0°
O4'NC1'NC2'NO2'N157.2°155.2°
O4'NC1'NC2'NHC2A86.7°81.2°
C1'NO4'NC4'NC3'N2.6°26.6°
C1'NO4'NC4'NC5'N120.8°146.0°
C1'NO4'NC4'NHC4A120.5°92.9°
C2'NC1'NHC1AHC1B122.3°122.9°
C1'NC2'NC3'NO2'N119.2°118.2°
C1'NC2'NC3'NHC2A124.7°118.2°
C1'NC2'NO2'NHC2A124.8°123.7°
C1'NC2'NO2'NHO2A180.0°61.4°
C1'NC2'NC3'NC4'N35.1°20.9°
C1'NC2'NC3'NO3'N79.6°97.9°
C1'NC2'NC3'NHC3A159.3°139.6°
C2'NC1'NO4'NC4'N19.9°40.1°
HC1AC1'NC2'NC3'N86.7°155.5°
HC1AC1'NC2'NO2'N37.2°86.3°
HC1AC1'NC2'NHC2A153.3°37.3°
HC1AC1'NO4'NC4'N100.1°158.6°
HC1BC1'NC2'NC3'N153.3°81.6°
HC1BC1'NC2'NO2'N82.8°36.6°
HC1BC1'NC2'NHC2A33.3°160.2°
HC1BC1'NO4'NC4'N139.9°78.4°
C3'AC2'AO2'AHC2'120.6°122.6°
C3'AC2'AO2'AHO2'64.3°65.3°
C2'AC3'AC4'AO3'A123.9°118.6°
C2'AC3'AC4'AHC3'118.3°118.7°
C2'AC3'AO3'AHC3'118.3°122.7°
C2'AC3'AO3'AHO3'180.0°61.5°
C2'AC3'AC4'AC5'A122.8°143.0°
C2'AC3'AC4'AO4'A1.9°24.0°
C2'AC3'AC4'AHC4'119.0°94.8°
O2'AC2'AC3'AC4'A122.7°118.6°
O2'AC2'AC3'AO3'A4.8°0.0°
O2'AC2'AC3'AHC3'113.1°122.7°
HC2'C2'AO2'AHO2'56.3°57.3°
HC2'C2'AC3'AC4'A118.8°118.6°
HC2'C2'AC3'AO3'A123.3°122.7°
HC2'C2'AC3'AHC3'5.5°0.0°
C3'NC2'NO2'NHC2A120.2°123.6°
C3'NC2'NO2'NHO2A64.9°174.2°
C2'NC3'NC4'NO3'N116.7°118.7°
C2'NC3'NC4'NHC3A122.5°118.7°
C2'NC3'NO3'NHC3A123.1°122.5°
C2'NC3'NO3'NHO3A180.0°61.4°
C2'NC3'NC4'NO4'N23.7°2.1°
C2'NC3'NC4'NC5'N89.6°121.6°
C2'NC3'NC4'NHC4A150.9°117.4°
O2'NC2'NC3'NC4'N154.2°139.1°
O2'NC2'NC3'NO3'N39.5°20.3°
O2'NC2'NC3'NHC3A81.6°102.2°
HC2AC2'NO2'NHO2A55.2°62.2°
HC2AC2'NC3'NC4'N89.6°97.4°
HC2AC2'NC3'NO3'N155.7°143.8°
HC2AC2'NC3'NHC3A34.6°21.3°
C4'AC3'AO3'AHC3'124.3°122.7°
C4'AC3'AO3'AHO3'62.7°176.1°
C3'AC4'AC5'AO4'A122.5°115.4°
C3'AC4'AC5'AHC4'120.7°122.3°
C3'AC4'AO4'AHC4'120.6°118.9°
C3'AC4'AC5'AO5'A79.0°175.0°
C3'AC4'AC5'AHC5'41.0°55.0°
C3'AC4'AC5'AHC5A161.0°65.0°
O3'AC3'AC4'AC5'A113.3°98.4°
O3'AC3'AC4'AO4'A122.0°142.6°
O3'AC3'AC4'AHC4'4.9°23.8°
HC3'C3'AO3'AHO3'61.6°61.2°
HC3'C3'AC4'AC5'A4.6°24.2°
HC3'C3'AC4'AO4'A120.2°94.7°
HC3'C3'AC4'AHC4'122.7°146.5°
C4'NC3'NO3'NHC3A124.5°122.6°
C4'NC3'NO3'NHO3A67.6°176.2°
C3'NC4'NO4'NC5'N123.4°119.4°
C3'NC4'NO4'NHC4A117.9°119.5°
C3'NC4'NC5'NHC4A118.7°121.0°
C3'NC4'NC5'NO5'N175.5°175.0°
C3'NC4'NC5'NHC5B64.6°55.0°
C3'NC4'NC5'NHC5C55.4°65.0°
O3'NC3'NC4'NO4'N93.0°120.8°
O3'NC3'NC4'NC5'N153.8°119.7°
O3'NC3'NC4'NHC4A34.3°1.3°
HC3AC3'NO3'NHO3A56.9°61.1°
HC3AC3'NC4'NO4'N146.2°116.6°
HC3AC3'NC4'NC5'N32.9°2.9°
HC3AC3'NC4'NHC4A86.6°123.9°
C5'AC4'AO4'AHC4'117.9°122.2°
C4'AC5'AO5'AHC5'120.0°120.0°
C4'AC5'AO5'AHC5A120.0°119.9°
C4'AC5'AHC5'HC5A125.9°120.0°
O4'AC4'AC5'AO5'A158.5°69.5°
O4'AC4'AC5'AHC5'81.5°170.4°
O4'AC4'AC5'AHC5A38.5°50.4°
HC4'C4'AC5'AO5'A41.7°52.8°
HC4'C4'AC5'AHC5'161.7°67.3°
HC4'C4'AC5'AHC5A78.3°172.7°
O4'NC4'NC5'NHC4A127.2°121.2°
O4'NC4'NC5'NO5'N61.3°67.1°
O4'NC4'NC5'NHC5B178.7°172.9°
O4'NC4'NC5'NHC5C58.7°52.8°
C4'NC5'NO5'NHC5B120.0°120.0°
C4'NC5'NO5'NHC5C120.0°120.0°
C4'NC5'NHC5BHC5C121.1°120.1°
HC4AC4'NC5'NO5'N65.9°54.0°
HC4AC4'NC5'NHC5B54.1°66.0°
HC4AC4'NC5'NHC5C174.1°174.0°
O5'AC5'AHC5'HC5A125.9°120.0°
O5'NC5'NHC5BHC5C121.1°119.9°

221051

PDB entries from 2024-06-12

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