ATP
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
PG | O1G | doub | 1.48Å | 1.49Å | |
PG | O2G | sing | 1.61Å | 1.48Å | |
PG | O3G | sing | 1.61Å | 1.47Å | |
PG | O3B | sing | 1.61Å | 1.59Å | |
O2G | HOG2 | sing | 0.97Å | 0.95Å | |
O3G | HOG3 | sing | 0.97Å | 0.95Å | |
PB | O1B | doub | 1.48Å | 1.42Å | |
PB | O2B | sing | 1.61Å | 1.45Å | |
PB | O3B | sing | 1.61Å | 1.59Å | |
PB | O3A | sing | 1.61Å | 1.68Å | |
O2B | HOB2 | sing | 0.97Å | 0.95Å | |
PA | O1A | doub | 1.48Å | 1.44Å | |
PA | O2A | sing | 1.61Å | 1.46Å | |
PA | O3A | sing | 1.61Å | 1.56Å | |
PA | O5' | sing | 1.61Å | 1.45Å | |
O2A | HOA2 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.25Å | |
C5' | C4' | sing | 1.53Å | 1.45Å | |
C5' | H5'1 | sing | 1.09Å | 1.11Å | |
C5' | H5'2 | sing | 1.09Å | 1.11Å | |
C4' | O4' | sing | 1.44Å | 1.44Å | |
C4' | C3' | sing | 1.54Å | 1.49Å | |
C4' | H4' | sing | 1.09Å | 1.12Å | |
O4' | C1' | sing | 1.44Å | 1.46Å | |
C3' | O3' | sing | 1.43Å | 1.41Å | |
C3' | C2' | sing | 1.55Å | 1.53Å | |
C3' | H3' | sing | 1.09Å | 1.11Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | O2' | sing | 1.43Å | 1.41Å | |
C2' | C1' | sing | 1.54Å | 1.56Å | |
C2' | H2' | sing | 1.09Å | 1.11Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.46Å | 1.47Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
N9 | C8 | sing | 1.36Å | 1.40Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.34Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.30Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.10Å | |
N7 | C5 | sing | 1.35Å | 1.39Å | Aromatic |
C5 | C6 | sing | 1.40Å | 1.42Å | Aromatic |
C5 | C4 | doub | 1.40Å | 1.36Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.32Å | |
C6 | N1 | doub | 1.33Å | 1.37Å | Aromatic |
N6 | HN61 | sing | 0.97Å | 1.02Å | |
N6 | HN62 | sing | 0.97Å | 1.02Å | |
N1 | C2 | sing | 1.32Å | 1.33Å | Aromatic |
C2 | N3 | doub | 1.32Å | 1.33Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.10Å | |
N3 | C4 | sing | 1.33Å | 1.40Å | Aromatic |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O1G | PG | O2G | 114.4° | 109.5° |
O1G | PG | O3G | 112.3° | 109.5° |
O1G | PG | O3B | 109.6° | 109.5° |
O2G | PG | O3G | 113.5° | 109.4° |
O2G | PG | O3B | 102.0° | 109.5° |
PG | O2G | HOG2 | 114.3° | 106.8° |
O3G | PG | O3B | 103.9° | 109.5° |
PG | O3G | HOG3 | 112.3° | 106.8° |
PG | O3B | PB | 133.8° | 106.8° |
O1B | PB | O2B | 121.6° | 109.5° |
O1B | PB | O3B | 115.7° | 109.5° |
O1B | PB | O3A | 94.5° | 109.4° |
O2B | PB | O3B | 119.2° | 109.5° |
O2B | PB | O3A | 102.2° | 109.5° |
PB | O2B | HOB2 | 121.6° | 106.7° |
O3B | PB | O3A | 91.8° | 109.5° |
PB | O3A | PA | 130.1° | 106.8° |
O1A | PA | O2A | 122.3° | 109.5° |
O1A | PA | O3A | 117.6° | 109.4° |
O1A | PA | O5' | 82.7° | 109.4° |
O2A | PA | O3A | 118.3° | 109.5° |
O2A | PA | O5' | 103.6° | 109.5° |
PA | O2A | HOA2 | 122.3° | 106.8° |
O3A | PA | O5' | 97.0° | 109.5° |
PA | O5' | C5' | 158.3° | 106.8° |
O5' | C5' | C4' | 149.7° | 109.5° |
O5' | C5' | H5'1 | 98.9° | 109.5° |
O5' | C5' | H5'2 | 98.9° | 109.5° |
C4' | C5' | H5'1 | 98.9° | 109.4° |
C4' | C5' | H5'2 | 98.9° | 109.5° |
C5' | C4' | O4' | 99.5° | 110.4° |
C5' | C4' | C3' | 87.8° | 110.5° |
C5' | C4' | H4' | 127.2° | 110.3° |
H5'1 | C5' | H5'2 | 107.6° | 109.5° |
O4' | C4' | C3' | 109.2° | 104.8° |
O4' | C4' | H4' | 110.4° | 110.4° |
C4' | O4' | C1' | 110.0° | 105.3° |
C3' | C4' | H4' | 119.4° | 110.4° |
C4' | C3' | O3' | 115.8° | 110.5° |
C4' | C3' | C2' | 103.4° | 104.1° |
C4' | C3' | H3' | 112.3° | 110.5° |
O4' | C1' | C2' | 105.7° | 104.9° |
O4' | C1' | N9 | 106.3° | 110.4° |
O4' | C1' | H1' | 115.5° | 110.4° |
O3' | C3' | C2' | 116.6° | 110.6° |
O3' | C3' | H3' | 97.7° | 110.4° |
C3' | O3' | HO3' | 115.8° | 106.8° |
C2' | C3' | H3' | 111.4° | 110.6° |
C3' | C2' | O2' | 108.5° | 110.5° |
C3' | C2' | C1' | 105.1° | 104.0° |
C3' | C2' | H2' | 113.1° | 110.5° |
O2' | C2' | C1' | 110.1° | 110.8° |
O2' | C2' | H2' | 108.3° | 110.5° |
C2' | O2' | HO2' | 108.6° | 106.8° |
C1' | C2' | H2' | 111.6° | 110.4° |
C2' | C1' | N9 | 114.0° | 110.4° |
C2' | C1' | H1' | 108.1° | 110.3° |
N9 | C1' | H1' | 107.5° | 110.3° |
C1' | N9 | C8 | 130.0° | 126.3° |
C1' | N9 | C4 | 124.6° | 126.4° |
C8 | N9 | C4 | 105.4° | 107.4° |
N9 | C8 | N7 | 114.0° | 110.0° |
N9 | C8 | H8 | 126.3° | 125.0° |
N9 | C4 | C5 | 106.3° | 106.1° |
N9 | C4 | N3 | 126.1° | 134.9° |
N7 | C8 | H8 | 119.7° | 125.0° |
C8 | N7 | C5 | 102.3° | 109.4° |
N7 | C5 | C6 | 132.5° | 134.7° |
N7 | C5 | C4 | 112.0° | 107.1° |
C6 | C5 | C4 | 115.5° | 118.2° |
C5 | C6 | N6 | 122.1° | 120.8° |
C5 | C6 | N1 | 118.2° | 118.5° |
C5 | C4 | N3 | 127.6° | 119.1° |
N6 | C6 | N1 | 119.6° | 120.8° |
C6 | N6 | HN61 | 122.1° | 120.1° |
C6 | N6 | HN62 | 107.7° | 120.0° |
C6 | N1 | C2 | 120.4° | 121.2° |
HN61 | N6 | HN62 | 107.8° | 119.9° |
N1 | C2 | N3 | 127.3° | 122.4° |
N1 | C2 | H2 | 116.3° | 118.8° |
N3 | C2 | H2 | 116.4° | 118.8° |
C2 | N3 | C4 | 111.0° | 120.6° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O1G | PG | O2G | O3G | 130.7° | 120.0° |
O1G | PG | O2G | O3B | 118.2° | 120.0° |
O1G | PG | O3G | O3B | 118.4° | 120.1° |
O1G | PG | O2G | HOG2 | 180.0° | 60.0° |
O1G | PG | O3G | HOG3 | 180.0° | 180.0° |
O1G | PG | O3B | PB | 11.8° | 60.0° |
O2G | PG | O3G | O3B | 109.9° | 120.0° |
O2G | PG | O3G | HOG3 | 48.4° | 60.0° |
O2G | PG | O3B | PB | 109.8° | 180.0° |
O3G | PG | O2G | HOG2 | 49.3° | 60.0° |
O3G | PG | O3B | PB | 132.0° | 60.0° |
O3B | PG | O2G | HOG2 | 61.8° | 180.0° |
O3B | PG | O3G | HOG3 | 61.6° | 59.9° |
PG | O3B | PB | O1B | 166.8° | 60.0° |
PG | O3B | PB | O2B | 7.7° | 60.0° |
PG | O3B | PB | O3A | 97.4° | 179.9° |
O1B | PB | O2B | O3B | 157.8° | 120.0° |
O1B | PB | O2B | O3A | 103.1° | 120.0° |
O1B | PB | O3B | O3A | 95.8° | 119.9° |
O1B | PB | O2B | HOB2 | 180.0° | 180.0° |
O1B | PB | O3A | PA | 112.1° | 60.0° |
O2B | PB | O3B | O3A | 105.1° | 120.1° |
O2B | PB | O3A | PA | 11.6° | 60.0° |
O3B | PB | O2B | HOB2 | 22.2° | 60.0° |
O3B | PB | O3A | PA | 132.0° | 180.0° |
O3A | PB | O2B | HOB2 | 76.8° | 60.0° |
PB | O3A | PA | O1A | 93.5° | 60.0° |
PB | O3A | PA | O2A | 71.5° | 60.0° |
PB | O3A | PA | O5' | 178.9° | 179.9° |
O1A | PA | O2A | O3A | 164.3° | 120.0° |
O1A | PA | O2A | O5' | 89.9° | 120.0° |
O1A | PA | O3A | O5' | 85.4° | 120.0° |
O1A | PA | O2A | HOA2 | 180.0° | 179.9° |
O1A | PA | O5' | C5' | 173.2° | 60.0° |
O2A | PA | O3A | O5' | 109.6° | 120.0° |
O2A | PA | O5' | C5' | 65.3° | 60.0° |
O3A | PA | O2A | HOA2 | 15.8° | 60.1° |
O3A | PA | O5' | C5' | 56.2° | 180.0° |
O5' | PA | O2A | HOA2 | 90.1° | 60.0° |
PA | O5' | C5' | C4' | 59.6° | 180.0° |
PA | O5' | C5' | H5'1 | 175.1° | 60.1° |
PA | O5' | C5' | H5'2 | 65.6° | 60.0° |
O5' | C5' | C4' | H5'1 | 125.2° | 120.0° |
O5' | C5' | C4' | H5'2 | 125.3° | 120.0° |
O5' | C5' | H5'1 | H5'2 | 102.3° | 120.1° |
O5' | C5' | C4' | O4' | 64.4° | 61.5° |
O5' | C5' | C4' | C3' | 173.5° | 176.9° |
O5' | C5' | C4' | H4' | 60.5° | 60.8° |
C4' | C5' | H5'1 | H5'2 | 102.3° | 119.9° |
C5' | C4' | O4' | C3' | 91.0° | 119.0° |
C5' | C4' | O4' | H4' | 135.8° | 122.2° |
C5' | C4' | C3' | H4' | 132.3° | 122.3° |
C5' | C4' | O4' | C1' | 105.4° | 159.5° |
C5' | C4' | C3' | O3' | 107.4° | 98.3° |
C5' | C4' | C3' | C2' | 123.8° | 142.9° |
C5' | C4' | C3' | H3' | 3.6° | 24.2° |
H5'1 | C5' | C4' | O4' | 60.8° | 178.5° |
H5'1 | C5' | C4' | C3' | 48.3° | 63.1° |
H5'1 | C5' | C4' | H4' | 174.3° | 59.2° |
H5'2 | C5' | C4' | O4' | 170.3° | 58.6° |
H5'2 | C5' | C4' | C3' | 61.3° | 56.8° |
H5'2 | C5' | C4' | H4' | 64.8° | 179.2° |
O4' | C4' | C3' | H4' | 128.4° | 118.8° |
O4' | C4' | C3' | O3' | 153.3° | 142.8° |
O4' | C4' | C3' | C2' | 24.5° | 24.1° |
O4' | C4' | C3' | H3' | 95.7° | 94.7° |
C4' | O4' | C1' | C2' | 2.0° | 40.4° |
C4' | O4' | C1' | N9 | 119.4° | 159.4° |
C4' | O4' | C1' | H1' | 121.5° | 78.4° |
C3' | C4' | O4' | C1' | 14.4° | 40.5° |
C4' | C3' | O3' | C2' | 122.1° | 114.8° |
C4' | C3' | O3' | H3' | 119.3° | 122.5° |
C4' | C3' | C2' | H3' | 120.8° | 118.7° |
C4' | C3' | O3' | HO3' | 179.9° | 180.0° |
C4' | C3' | C2' | O2' | 93.1° | 118.8° |
C4' | C3' | C2' | C1' | 24.7° | 0.2° |
C4' | C3' | C2' | H2' | 146.7° | 118.6° |
H4' | C4' | O4' | C1' | 118.9° | 78.4° |
H4' | C4' | C3' | O3' | 24.9° | 24.0° |
H4' | C4' | C3' | C2' | 103.9° | 94.8° |
H4' | C4' | C3' | H3' | 135.9° | 146.5° |
O4' | C1' | C2' | C3' | 16.9° | 23.8° |
O4' | C1' | C2' | O2' | 99.8° | 142.5° |
O4' | C1' | C2' | N9 | 116.4° | 119.0° |
O4' | C1' | C2' | H1' | 124.2° | 118.9° |
O4' | C1' | C2' | H2' | 139.9° | 94.7° |
O4' | C1' | N9 | H1' | 124.2° | 122.3° |
O4' | C1' | N9 | C8 | 25.0° | 27.1° |
O4' | C1' | N9 | C4 | 154.1° | 153.0° |
O3' | C3' | C2' | H3' | 110.9° | 122.6° |
O3' | C3' | C2' | O2' | 35.2° | 0.1° |
O3' | C3' | C2' | C1' | 153.0° | 118.9° |
O3' | C3' | C2' | H2' | 85.0° | 122.6° |
C2' | C3' | O3' | HO3' | 57.9° | 65.3° |
C3' | C2' | O2' | C1' | 114.5° | 114.7° |
C3' | C2' | O2' | H2' | 123.2° | 122.6° |
C3' | C2' | C1' | H2' | 123.0° | 118.5° |
C3' | C2' | O2' | HO2' | 180.0° | 61.5° |
C3' | C2' | C1' | N9 | 99.4° | 142.8° |
C3' | C2' | C1' | H1' | 141.1° | 95.1° |
H3' | C3' | O3' | HO3' | 60.7° | 57.4° |
H3' | C3' | C2' | O2' | 146.1° | 122.5° |
H3' | C3' | C2' | C1' | 96.1° | 118.5° |
H3' | C3' | C2' | H2' | 25.9° | 0.0° |
O2' | C2' | C1' | H2' | 120.3° | 122.7° |
O2' | C2' | C1' | N9 | 143.8° | 98.5° |
O2' | C2' | C1' | H1' | 24.4° | 23.7° |
C1' | C2' | O2' | HO2' | 65.4° | 176.1° |
C2' | C1' | N9 | H1' | 119.8° | 122.1° |
C2' | C1' | N9 | C8 | 91.0° | 88.5° |
C2' | C1' | N9 | C4 | 89.9° | 91.4° |
H2' | C2' | O2' | HO2' | 56.9° | 61.1° |
H2' | C2' | C1' | N9 | 23.5° | 24.3° |
H2' | C2' | C1' | H1' | 95.9° | 146.4° |
C1' | N9 | C8 | C4 | 179.3° | 179.9° |
C1' | N9 | C8 | N7 | 178.7° | 180.0° |
C1' | N9 | C8 | H8 | 1.3° | 0.1° |
C1' | N9 | C4 | C5 | 178.3° | 179.7° |
C1' | N9 | C4 | N3 | 1.1° | 0.2° |
H1' | C1' | N9 | C8 | 149.2° | 149.4° |
H1' | C1' | N9 | C4 | 29.9° | 30.8° |
N9 | C8 | N7 | H8 | 180.0° | 179.9° |
N9 | C8 | N7 | C5 | 0.1° | 0.3° |
C8 | N9 | C4 | C5 | 1.0° | 0.2° |
C8 | N9 | C4 | N3 | 179.6° | 180.0° |
C4 | N9 | C8 | N7 | 0.6° | 0.1° |
C4 | N9 | C8 | H8 | 179.5° | 180.0° |
N9 | C4 | C5 | N7 | 1.1° | 0.3° |
N9 | C4 | C5 | C6 | 178.1° | 179.6° |
N9 | C4 | C5 | N3 | 179.4° | 179.9° |
N9 | C4 | N3 | C2 | 178.9° | 179.9° |
C8 | N7 | C5 | C6 | 178.4° | 179.5° |
C8 | N7 | C5 | C4 | 0.8° | 0.4° |
H8 | C8 | N7 | C5 | 179.9° | 179.7° |
N7 | C5 | C6 | C4 | 179.1° | 179.0° |
N7 | C5 | C6 | N6 | 1.1° | 0.8° |
N7 | C5 | C6 | N1 | 179.8° | 179.5° |
N7 | C5 | C4 | N3 | 179.4° | 179.8° |
C5 | C6 | N6 | N1 | 179.2° | 179.7° |
C5 | C6 | N6 | HN61 | 179.9° | 179.7° |
C5 | C6 | N6 | HN62 | 54.7° | 0.5° |
C5 | C6 | N1 | C2 | 0.3° | 0.3° |
C6 | C5 | C4 | N3 | 1.3° | 0.5° |
C4 | C5 | C6 | N6 | 178.0° | 179.7° |
C4 | C5 | C6 | N1 | 1.2° | 0.6° |
C5 | C4 | N3 | C2 | 0.4° | 0.2° |
C6 | N6 | HN61 | HN62 | 125.3° | 179.8° |
N6 | C6 | N1 | C2 | 178.9° | 180.0° |
N1 | C6 | N6 | HN61 | 0.8° | 0.0° |
N1 | C6 | N6 | HN62 | 126.1° | 179.8° |
C6 | N1 | C2 | N3 | 0.7° | 0.0° |
C6 | N1 | C2 | H2 | 179.4° | 180.0° |
N1 | C2 | N3 | H2 | 179.9° | 180.0° |
N1 | C2 | N3 | C4 | 0.6° | 0.0° |
H2 | C2 | N3 | C4 | 179.4° | 179.9° |