Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5OF

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O09C08doub1.22Å1.23Å
O01C02doub1.21Å1.28Å
C08N07sing1.35Å1.32Å
C08C10sing1.47Å1.46Å
N07N06sing1.39Å1.38Å
C11C10doub1.39Å1.37ÅAromatic
C11C12sing1.38Å1.37ÅAromatic
C10C15sing1.41Å1.38ÅAromatic
N06C05doub1.30Å1.31Å
C12C13doub1.39Å1.39ÅAromatic
C15C05sing1.46Å1.45Å
C15C14doub1.40Å1.41ÅAromatic
C05C04sing1.51Å1.54Å
C02C04sing1.51Å1.53Å
C02O03sing1.34Å1.26Å
C13C14sing1.38Å1.39ÅAromatic
C13H1sing1.08Å1.08Å
O03H2sing0.97Å0.95Å
C04H3sing1.09Å1.10Å
C04H4sing1.09Å1.10Å
N07H5sing0.97Å1.00Å
C11H6sing1.08Å1.08Å
C12H7sing1.08Å1.08Å
C14H8sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O09C08N07119.9°120.6°
O09C08C10122.7°120.6°
O01C02C04120.2°120.0°
O01C02O03119.6°120.0°
N07C08C10117.4°118.7°
C08N07N06126.2°121.8°
C08N07H5116.9°119.1°
C08C10C11120.8°122.0°
C08C10C15118.3°118.2°
N07N06C05116.9°122.7°
N06N07H5116.9°119.1°
C10C11C12122.4°119.5°
C11C10C15120.9°119.8°
C10C11H6118.8°120.2°
C11C12C13118.1°120.7°
C12C11H6118.8°120.2°
C11C12H7120.9°119.7°
C10C15C05118.2°118.6°
C10C15C14117.3°119.6°
N06C05C15123.0°120.0°
N06C05C04115.6°120.0°
C12C13C14119.8°120.7°
C12C13H1120.1°119.7°
C13C12H7120.9°119.6°
C05C15C14124.5°121.9°
C15C05C04121.3°120.0°
C15C14C13121.5°119.6°
C15C14H8119.2°120.2°
C05C04C02111.3°109.5°
C05C04H3109.0°109.5°
C05C04H4109.0°109.4°
C04C02O03120.2°120.0°
C02C04H3109.0°109.5°
C02C04H4109.0°109.5°
C02O03H2109.5°117.0°
C14C13H1120.1°119.6°
C13C14H8119.3°120.2°
H3C04H4109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O09C08N07C10178.8°180.0°
O09C08N07N06177.1°180.0°
O09C08C10C111.5°0.3°
O09C08C10C15177.4°180.0°
O09C08N07H53.0°0.0°
O01C02C04C0570.6°0.0°
O01C02C04O03178.5°179.9°
O01C02O03H20.0°0.1°
O01C02C04H3169.1°120.0°
O01C02C04H449.7°120.0°
C08N07N06H5180.0°180.0°
N07C08C10C11179.8°179.7°
N07C08C10C151.3°0.0°
C08N07N06C052.9°0.0°
C10C08N07N061.7°0.0°
C08C10C11C15178.9°179.7°
C08C10C11C12178.6°179.8°
C08C10C15C052.1°0.0°
C08C10C15C14178.9°180.0°
C10C08N07H5178.3°180.0°
C08C10C11H61.3°0.3°
N07N06C05C153.6°0.0°
N07N06C05C04179.5°180.0°
C10C11C12H6180.0°180.0°
C10C11C12C130.0°0.0°
C11C10C15C05179.0°179.7°
C11C10C15C140.0°0.3°
C10C11C12H7180.0°180.0°
C12C11C10C150.2°0.0°
C11C12C13H7180.0°180.0°
C11C12C13C140.5°0.3°
C11C12C13H1179.5°179.7°
C10C15C05N063.4°0.0°
C10C15C05C14178.9°180.0°
C10C15C05C04179.9°180.0°
C10C15C14C130.5°0.5°
C15C10C11H6179.8°180.0°
C10C15C14H8179.5°180.0°
N06C05C15C04176.7°180.0°
N06C05C15C14177.6°180.0°
N06C05C04C0226.2°0.1°
N06C05C04H394.1°120.0°
N06C05C04H4146.5°120.0°
C05N06N07H5177.1°180.0°
C12C13C14C150.8°0.5°
C12C13C14H1180.0°179.4°
C13C12C11H6179.9°180.0°
C12C13C14H8179.2°180.0°
C15C05C04C02156.9°180.0°
C05C15C14C13179.5°179.5°
C15C05C04H382.9°59.9°
C15C05C04H436.6°60.0°
C05C15C14H80.5°0.0°
C14C15C05C041.0°0.0°
C15C14C13H8180.0°179.5°
C15C14C13H1179.2°180.0°
C05C04C02H3120.3°120.0°
C05C04C02H4120.3°120.0°
C05C04C02O03107.9°180.0°
C05C04H3H4119.2°119.9°
C04C02O03H2178.5°180.0°
C02C04H3H4119.2°120.0°
O03C02C04H312.4°59.9°
O03C02C04H4131.9°60.0°
C14C13C12H7179.5°179.7°
H1C13C12H70.5°0.3°
H1C13C14H80.7°0.6°
H6C11C12H70.1°0.0°

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon