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SummaryGeometryRelated PDB entries

3YP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CAFCACsing1.54Å1.53Å
CAFCAKsing1.54Å1.55Å
CAFHAF1sing1.09Å1.11Å
CAFHAF2sing1.09Å1.12Å
CACCADsing1.55Å1.53Å
CACHAC1sing1.09Å1.12Å
CACHAC2sing1.09Å1.12Å
CADCAGsing1.55Å1.54Å
CADHAD1sing1.09Å1.11Å
CADHAD2sing1.09Å1.12Å
CAGCAKsing1.54Å1.54Å
CAGHAG1sing1.09Å1.12Å
CAGHAG2sing1.09Å1.11Å
CAKCAHsing1.53Å1.54Å
CAKHAKsing1.09Å1.12Å
CAHCAEsing1.53Å1.52Å
CAHHAH1sing1.09Å1.12Å
CAHHAH2sing1.09Å1.12Å
CAECAJsing1.51Å1.49Å
CAEHAE1sing1.09Å1.11Å
CAEHAE2sing1.09Å1.12Å
CAJOAAdoub1.21Å1.22Å
CAJNAIsing1.35Å1.14Å
NAIOABsing1.42Å1.32Å
NAIHAIsing0.97Å1.02Å
OABHABsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CACCAFCAK103.7°106.6°
CACCAFHAF1114.4°110.0°
CACCAFHAF2114.4°110.0°
CAFCACCAD99.9°104.2°
CAFCACHAC1115.9°110.5°
CAFCACHAC2115.9°110.5°
CAKCAFHAF1114.4°110.1°
CAKCAFHAF2114.4°110.0°
CAFCAKCAG104.8°106.6°
CAFCAKCAH113.4°110.1°
CAFCAKHAK109.4°110.0°
HAF1CAFHAF296.1°110.1°
CADCACHAC1115.9°110.5°
CADCACHAC2115.8°110.5°
CACCADCAG102.5°102.7°
CACCADHAD1114.8°110.8°
CACCADHAD2114.9°110.7°
HAC1CACHAC294.6°110.5°
CAGCADHAD1114.8°110.8°
CAGCADHAD2114.9°110.7°
CADCAGCAK105.2°104.2°
CADCAGHAG1113.8°110.5°
CADCAGHAG2113.8°110.5°
HAD1CADHAD295.6°110.8°
CAKCAGHAG1113.9°110.5°
CAKCAGHAG2113.8°110.5°
CAGCAKCAH107.3°110.0°
CAGCAKHAK115.2°110.0°
HAG1CAGHAG296.6°110.5°
CAHCAKHAK106.9°110.0°
CAKCAHCAE118.1°109.5°
CAKCAHHAH1109.1°109.5°
CAKCAHHAH2109.1°109.4°
CAECAHHAH1109.1°109.5°
CAECAHHAH2109.1°109.5°
CAHCAECAJ105.6°109.4°
CAHCAEHAE1113.7°109.5°
CAHCAEHAE2113.6°109.5°
HAH1CAHHAH2101.0°109.4°
CAJCAEHAE1113.7°109.5°
CAJCAEHAE2113.6°109.4°
CAECAJOAA124.6°120.0°
CAECAJNAI113.7°120.0°
HAE1CAEHAE296.8°109.5°
OAACAJNAI119.7°120.0°
CAJNAIOAB123.0°120.0°
CAJNAIHAI110.8°120.0°
OABNAIHAI126.2°120.0°
NAIOABHAB123.0°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CACCAFCAKHAF1125.2°119.3°
CACCAFCAKHAF2125.3°119.2°
CACCAFHAF1HAF2120.3°121.4°
CAFCACCADHAC1125.3°118.7°
CAFCACCADHAC2125.3°118.7°
CAFCACHAC1HAC2121.7°122.6°
CAFCACCADCAG47.6°38.0°
CAFCACCADHAD1172.9°80.4°
CAFCACCADHAD277.7°156.2°
CACCAFCAKCAG24.9°0.0°
CACCAFCAKCAH141.6°119.3°
CACCAFCAKHAK99.2°119.3°
CAKCAFHAF1HAF2120.3°121.5°
CAKCAFCACCAD44.7°23.7°
CAKCAFCACHAC180.6°142.3°
CAKCAFCACHAC2169.9°95.1°
CAFCAKCAGCAD4.8°23.6°
CAFCAKCAGCAH120.8°119.3°
CAFCAKCAGHAK120.2°119.3°
CAFCAKCAGHAG1120.5°95.1°
CAFCAKCAGHAG2130.0°142.3°
CAFCAKCAHHAK120.6°121.4°
CAFCAKCAHCAE61.3°175.0°
CAFCAKCAHHAH1173.4°54.9°
CAFCAKCAHHAH264.0°65.0°
HAF1CAFCACCAD80.5°95.7°
HAF1CAFCACHAC1154.2°23.0°
HAF1CAFCACHAC244.7°145.6°
HAF1CAFCAKCAG100.3°119.2°
HAF1CAFCAKCAH16.3°121.5°
HAF1CAFCAKHAK135.6°0.1°
HAF2CAFCACCAD170.0°142.9°
HAF2CAFCACHAC144.7°98.4°
HAF2CAFCACHAC264.8°24.2°
HAF2CAFCAKCAG150.2°119.3°
HAF2CAFCAKCAH93.2°0.1°
HAF2CAFCAKHAK26.1°121.4°
CADCACHAC1HAC2121.7°122.6°
CACCADCAGHAD1125.3°118.3°
CACCADCAGHAD2125.3°118.3°
CACCADHAD1HAD2120.7°123.3°
CACCADCAGCAK32.6°38.0°
CACCADCAGHAG192.7°80.7°
CACCADCAGHAG2157.8°156.6°
HAC1CACCADCAG77.6°156.7°
HAC1CACCADHAD147.6°38.3°
HAC1CACCADHAD2157.1°85.1°
HAC2CACCADCAG172.9°80.7°
HAC2CACCADHAD161.8°160.9°
HAC2CACCADHAD247.6°37.5°
CAGCADHAD1HAD2120.7°123.4°
CADCAGCAKHAG1125.3°118.7°
CADCAGCAKHAG2125.3°118.7°
CADCAGHAG1HAG2119.7°122.6°
CADCAGCAKCAH116.1°142.9°
CADCAGCAKHAK125.0°95.7°
HAD1CADCAGCAK157.8°80.4°
HAD1CADCAGHAG132.5°161.0°
HAD1CADCAGHAG276.9°38.3°
HAD2CADCAGCAK92.7°156.2°
HAD2CADCAGHAG1142.0°37.5°
HAD2CADCAGHAG232.6°85.1°
CAKCAGHAG1HAG2119.8°122.6°
CAGCAKCAHHAK124.2°121.4°
CAGCAKCAHCAE176.5°67.8°
CAGCAKCAHHAH158.2°172.2°
CAGCAKCAHHAH251.2°52.2°
HAG1CAGCAKCAH118.7°24.3°
HAG1CAGCAKHAK0.3°145.6°
HAG2CAGCAKCAH9.2°98.4°
HAG2CAGCAKHAK109.7°23.0°
CAKCAHCAEHAH1125.3°120.0°
CAKCAHCAEHAH2125.3°120.0°
CAKCAHHAH1HAH2114.8°119.9°
CAKCAHCAECAJ133.6°180.0°
CAKCAHCAEHAE1101.1°60.0°
CAKCAHCAEHAE28.4°60.0°
HAKCAKCAHCAE59.3°53.6°
HAKCAKCAHHAH165.9°66.4°
HAKCAKCAHHAH2175.4°173.6°
CAECAHHAH1HAH2114.8°120.1°
CAHCAECAJHAE1125.3°120.0°
CAHCAECAJHAE2125.2°120.0°
CAHCAEHAE1HAE2119.6°120.1°
CAHCAECAJOAA66.5°0.0°
CAHCAECAJNAI97.0°180.0°
HAH1CAHCAECAJ8.3°60.0°
HAH1CAHCAEHAE1133.6°NaN°
HAH1CAHCAEHAE2116.9°60.0°
HAH2CAHCAECAJ101.1°60.0°
HAH2CAHCAEHAE124.1°60.0°
HAH2CAHCAEHAE2133.6°180.0°
CAJCAEHAE1HAE2119.6°120.0°
CAECAJOAANAI162.6°179.9°
CAECAJNAIOAB175.7°180.0°
CAECAJNAIHAI4.3°0.0°
HAE1CAECAJOAA58.8°120.0°
HAE1CAECAJNAI137.7°59.9°
HAE2CAECAJOAA168.3°120.0°
HAE2CAECAJNAI28.3°60.0°
OAACAJNAIOAB11.3°0.1°
OAACAJNAIHAI168.7°180.0°
CAJNAIOABHAI180.0°180.0°
CAJNAIOABHAB180.0°180.0°
HAINAIOABHAB0.0°0.1°

221051

PDB entries from 2024-06-12

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