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Summary Geometry Related PDB entries

3PP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
CB	CG	sing	1.53Å	1.53Å
CB	P	sing	1.82Å	1.83Å
CB	HCB1	sing	1.09Å	1.11Å
CB	HCB2	sing	1.09Å	1.11Å
CG	CD	sing	1.51Å	1.54Å
CG	HCG1	sing	1.09Å	1.12Å
CG	HCG2	sing	1.09Å	1.12Å
P	O1	sing	1.61Å	1.50Å
P	O2	doub	1.48Å	1.49Å
P	O3	sing	1.61Å	1.49Å
CD	OE1	doub	1.21Å	1.24Å
CD	OE2	sing	1.34Å	1.24Å
OE2	HE2	sing	0.97Å	0.95Å
O1	HO1	sing	0.97Å	0.95Å
O3	HO3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CG	CB	P	113.5°	109.5°
CG	CB	HCB1	110.7°	109.5°
CG	CB	HCB2	110.7°	109.4°
CB	CG	CD	112.6°	109.5°
CB	CG	HCG1	111.1°	109.5°
CB	CG	HCG2	111.1°	109.4°
P	CB	HCB1	110.7°	109.5°
P	CB	HCB2	110.7°	109.5°
CB	P	O1	103.2°	109.5°
CB	P	O2	100.7°	109.5°
CB	P	O3	100.0°	109.5°
HCB1	CB	HCB2	99.6°	109.5°
CD	CG	HCG1	111.1°	109.5°
CD	CG	HCG2	111.1°	109.4°
CG	CD	OE1	118.8°	120.0°
CG	CD	OE2	120.2°	120.1°
HCG1	CG	HCG2	99.2°	109.5°
O1	P	O2	116.4°	109.4°
O1	P	O3	116.3°	109.5°
P	O1	HO1	103.2°	106.8°
O2	P	O3	116.1°	109.5°
P	O3	HO3	100.0°	106.8°
OE1	CD	OE2	121.0°	120.0°
CD	OE2	HE2	120.2°	120.1°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CG	CB	P	HCB1	125.2°	120.0°
CG	CB	P	HCB2	125.3°	119.9°
CG	CB	HCB1	HCB2	116.6°	119.9°
CB	CG	CD	HCG1	125.3°	120.1°
CB	CG	CD	HCG2	125.3°	120.0°
CB	CG	HCG1	HCG2	116.9°	120.0°
CG	CB	P	O1	64.3°	180.0°
CG	CB	P	O2	56.3°	60.1°
CG	CB	P	O3	175.5°	59.9°
CB	CG	CD	OE1	159.7°	0.0°
CB	CG	CD	OE2	21.1°	180.0°
P	CB	HCB1	HCB2	116.6°	120.0°
P	CB	CG	CD	163.8°	180.0°
P	CB	CG	HCG1	70.9°	59.9°
P	CB	CG	HCG2	38.5°	60.1°
CB	P	O1	O2	109.3°	120.0°
CB	P	O1	O3	108.4°	120.1°
CB	P	O2	O3	106.8°	120.0°
CB	P	O1	HO1	180.0°	179.9°
CB	P	O3	HO3	180.0°	60.0°
HCB1	CB	CG	CD	71.0°	59.9°
HCB1	CB	CG	HCG1	54.3°	180.0°
HCB1	CB	CG	HCG2	163.7°	60.0°
HCB1	CB	P	O1	170.5°	60.0°
HCB1	CB	P	O2	68.9°	60.0°
HCB1	CB	P	O3	50.3°	180.0°
HCB2	CB	CG	CD	38.5°	60.0°
HCB2	CB	CG	HCG1	163.8°	60.0°
HCB2	CB	CG	HCG2	86.8°	180.0°
HCB2	CB	P	O1	60.9°	60.1°
HCB2	CB	P	O2	178.4°	180.0°
HCB2	CB	P	O3	59.3°	60.0°
CD	CG	HCG1	HCG2	117.0°	120.0°
CG	CD	OE1	OE2	179.3°	180.0°
CG	CD	OE2	HE2	180.0°	180.0°
HCG1	CG	CD	OE1	34.4°	120.0°
HCG1	CG	CD	OE2	146.3°	60.0°
HCG2	CG	CD	OE1	75.0°	120.0°
HCG2	CG	CD	OE2	104.2°	60.0°
O1	P	O2	O3	142.4°	120.0°
O1	P	O3	HO3	69.8°	60.0°
O2	P	O1	HO1	70.7°	59.9°
O2	P	O3	HO3	72.7°	180.0°
O3	P	O1	HO1	71.6°	60.0°
OE1	CD	OE2	HE2	0.7°	0.1°

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