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Summary Geometry Related PDB entries

Obsolete: 2PI

2PI was replaced with NVA on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	CA	sing	1.47Å	1.45Å
N	H	sing	1.01Å	1.02Å
N	HN2	sing	1.01Å	1.02Å
CA	C	sing	1.51Å	1.53Å
CA	CB	sing	1.53Å	1.52Å
CA	HA	sing	1.09Å	1.12Å
C	O	doub	1.21Å	1.23Å
C	OXT	sing	1.34Å	1.22Å
OXT	HXT	sing	0.97Å	0.95Å
CB	CG	sing	1.53Å	1.52Å
CB	HB1	sing	1.09Å	1.11Å
CB	HB2	sing	1.09Å	1.12Å
CG	CD	sing	1.53Å	1.53Å
CG	HG1	sing	1.09Å	1.12Å
CG	HG2	sing	1.09Å	1.12Å
CD	HD1	sing	1.09Å	1.11Å
CD	HD2	sing	1.09Å	1.11Å
CD	HD3	sing	1.09Å	1.11Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CA	N	H	109.8°	106.7°
CA	N	HN2	112.0°	106.7°
N	CA	C	109.8°	109.4°
N	CA	CB	108.5°	109.4°
N	CA	HA	110.4°	109.5°
H	N	HN2	112.1°	106.7°
C	CA	CB	110.9°	109.5°
C	CA	HA	107.9°	109.5°
CA	C	O	119.1°	120.1°
CA	C	OXT	118.3°	120.0°
CB	CA	HA	109.3°	109.5°
CA	CB	CG	111.4°	109.5°
CA	CB	HB1	111.6°	109.4°
CA	CB	HB2	111.6°	109.5°
O	C	OXT	122.6°	119.9°
C	OXT	HXT	118.3°	120.0°
CG	CB	HB1	111.5°	109.4°
CG	CB	HB2	111.5°	109.4°
CB	CG	CD	111.3°	109.5°
CB	CG	HG1	111.6°	109.5°
CB	CG	HG2	111.6°	109.4°
HB1	CB	HB2	98.9°	109.5°
CD	CG	HG1	111.5°	109.5°
CD	CG	HG2	111.5°	109.5°
CG	CD	HD1	111.3°	109.5°
CG	CD	HD2	111.6°	109.5°
CG	CD	HD3	111.5°	109.5°
HG1	CG	HG2	98.8°	109.4°
HD1	CD	HD2	111.5°	109.4°
HD1	CD	HD3	111.5°	109.5°
HD2	CD	HD3	98.9°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CA	N	H	HN2	125.2°	113.8°
N	CA	C	CB	119.9°	119.9°
N	CA	C	HA	120.4°	120.0°
N	CA	CB	HA	120.4°	120.0°
N	CA	C	O	137.8°	30.0°
N	CA	C	OXT	40.0°	150.1°
N	CA	CB	CG	175.0°	60.0°
N	CA	CB	HB1	49.7°	180.0°
N	CA	CB	HB2	59.8°	60.0°
H	N	CA	C	180.0°	173.8°
H	N	CA	CB	58.6°	53.8°
H	N	CA	HA	61.1°	66.1°
HN2	N	CA	C	54.7°	60.0°
HN2	N	CA	CB	66.6°	60.0°
HN2	N	CA	HA	173.6°	180.0°
C	CA	CB	HA	118.8°	120.1°
CA	C	O	OXT	177.7°	179.8°
CA	C	OXT	HXT	180.0°	180.0°
C	CA	CB	CG	64.3°	180.0°
C	CA	CB	HB1	170.4°	60.1°
C	CA	CB	HB2	60.9°	60.0°
CB	CA	C	O	102.2°	89.9°
CB	CA	C	OXT	80.0°	90.0°
CA	CB	CG	HB1	125.3°	120.0°
CA	CB	CG	HB2	125.3°	120.0°
CA	CB	HB1	HB2	117.5°	120.0°
CA	CB	CG	CD	174.2°	179.9°
CA	CB	CG	HG1	48.9°	60.0°
CA	CB	CG	HG2	60.6°	59.9°
HA	CA	C	O	17.4°	150.1°
HA	CA	C	OXT	160.4°	30.1°
HA	CA	CB	CG	54.5°	60.0°
HA	CA	CB	HB1	70.7°	60.0°
HA	CA	CB	HB2	179.8°	180.0°
O	C	OXT	HXT	2.3°	0.1°
CG	CB	HB1	HB2	117.3°	119.9°
CB	CG	CD	HG1	125.3°	120.1°
CB	CG	CD	HG2	125.3°	120.0°
CB	CG	HG1	HG2	117.5°	119.9°
CB	CG	CD	HD1	180.0°	180.0°
CB	CG	CD	HD2	54.7°	60.0°
CB	CG	CD	HD3	54.8°	59.9°
HB1	CB	CG	CD	60.5°	60.0°
HB1	CB	CG	HG1	174.2°	180.0°
HB1	CB	CG	HG2	64.7°	60.1°
HB2	CB	CG	CD	48.9°	60.0°
HB2	CB	CG	HG1	76.4°	60.1°
HB2	CB	CG	HG2	174.1°	180.0°
CD	CG	HG1	HG2	117.4°	120.0°
CG	CD	HD1	HD2	125.3°	120.0°
CG	CD	HD1	HD3	125.2°	120.1°
CG	CD	HD2	HD3	117.4°	120.0°
HG1	CG	CD	HD1	54.7°	59.9°
HG1	CG	CD	HD2	180.0°	60.0°
HG1	CG	CD	HD3	70.5°	180.0°
HG2	CG	CD	HD1	54.8°	60.0°
HG2	CG	CD	HD2	70.6°	180.0°
HG2	CG	CD	HD3	179.9°	60.1°
HD1	CD	HD2	HD3	117.4°	120.0°

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