2AM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O1P | doub | 1.48Å | 1.44Å | |
| P | O2P | sing | 1.61Å | 1.51Å | |
| P | O3P | sing | 1.61Å | 1.45Å | |
| P | O2' | sing | 1.61Å | 1.65Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å | |
| C5' | O5' | sing | 1.43Å | 1.45Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | H5'1 | sing | 1.09Å | 1.11Å | |
| C5' | H5'2 | sing | 1.09Å | 1.11Å | |
| O5' | HO5' | sing | 0.97Å | 0.95Å | |
| C4' | O4' | sing | 1.44Å | 1.48Å | |
| C4' | C3' | sing | 1.54Å | 1.57Å | |
| C4' | H4' | sing | 1.09Å | 1.12Å | |
| O4' | C1' | sing | 1.45Å | 1.45Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| C3' | C2' | sing | 1.55Å | 1.55Å | |
| C3' | H3' | sing | 1.09Å | 1.11Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C1' | sing | 1.54Å | 1.51Å | |
| C2' | H2' | sing | 1.09Å | 1.11Å | |
| C1' | N9 | sing | 1.46Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.12Å | |
| N9 | C8 | sing | 1.36Å | 1.39Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.40Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.32Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.10Å | |
| N7 | C5 | sing | 1.36Å | 1.38Å | Aromatic |
| C5 | C6 | sing | 1.40Å | 1.43Å | Aromatic |
| C5 | C4 | doub | 1.41Å | 1.39Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.26Å | |
| C6 | N1 | doub | 1.33Å | 1.39Å | Aromatic |
| N6 | HN61 | sing | 0.97Å | 1.02Å | |
| N6 | HN62 | sing | 0.97Å | 1.02Å | |
| N1 | C2 | sing | 1.32Å | 1.39Å | Aromatic |
| C2 | N3 | doub | 1.32Å | 1.36Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.10Å | |
| N3 | C4 | sing | 1.33Å | 1.37Å | Aromatic |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 106.6° | 109.5° |
| O1P | P | O3P | 123.0° | 109.5° |
| O1P | P | O2' | 101.6° | 109.4° |
| O2P | P | O3P | 119.7° | 109.5° |
| O2P | P | O2' | 98.5° | 109.5° |
| P | O2P | HOP2 | 106.6° | 106.9° |
| O3P | P | O2' | 102.3° | 109.4° |
| P | O3P | HOP3 | 123.0° | 106.8° |
| P | O2' | C2' | 127.6° | 106.9° |
| O5' | C5' | C4' | 108.7° | 109.5° |
| O5' | C5' | H5'1 | 112.5° | 109.5° |
| O5' | C5' | H5'2 | 112.5° | 109.5° |
| C5' | O5' | HO5' | 108.7° | 106.9° |
| C4' | C5' | H5'1 | 112.5° | 109.4° |
| C4' | C5' | H5'2 | 112.5° | 109.4° |
| C5' | C4' | O4' | 111.8° | 110.4° |
| C5' | C4' | C3' | 111.2° | 110.5° |
| C5' | C4' | H4' | 107.0° | 110.4° |
| H5'1 | C5' | H5'2 | 98.0° | 109.5° |
| O4' | C4' | C3' | 110.4° | 104.8° |
| O4' | C4' | H4' | 107.9° | 110.4° |
| C4' | O4' | C1' | 105.6° | 105.3° |
| C3' | C4' | H4' | 108.5° | 110.3° |
| C4' | C3' | O3' | 111.4° | 110.6° |
| C4' | C3' | C2' | 96.4° | 104.1° |
| C4' | C3' | H3' | 116.5° | 110.5° |
| O4' | C1' | C2' | 100.0° | 104.9° |
| O4' | C1' | N9 | 106.6° | 110.3° |
| O4' | C1' | H1' | 120.4° | 110.4° |
| O3' | C3' | C2' | 109.5° | 110.6° |
| O3' | C3' | H3' | 104.8° | 110.4° |
| C3' | O3' | HO3' | 111.4° | 106.8° |
| C2' | C3' | H3' | 118.2° | 110.6° |
| C3' | C2' | O2' | 109.7° | 110.5° |
| C3' | C2' | C1' | 108.1° | 104.0° |
| C3' | C2' | H2' | 110.5° | 110.5° |
| O2' | C2' | C1' | 110.4° | 110.8° |
| O2' | C2' | H2' | 108.2° | 110.4° |
| C1' | C2' | H2' | 109.9° | 110.5° |
| C2' | C1' | N9 | 118.1° | 110.4° |
| C2' | C1' | H1' | 109.4° | 110.4° |
| N9 | C1' | H1' | 103.1° | 110.3° |
| C1' | N9 | C8 | 129.5° | 126.3° |
| C1' | N9 | C4 | 123.2° | 126.3° |
| C8 | N9 | C4 | 104.2° | 107.4° |
| N9 | C8 | N7 | 113.6° | 110.0° |
| N9 | C8 | H8 | 125.3° | 125.0° |
| N9 | C4 | C5 | 105.0° | 106.1° |
| N9 | C4 | N3 | 125.8° | 134.9° |
| N7 | C8 | H8 | 121.2° | 125.0° |
| C8 | N7 | C5 | 103.9° | 109.4° |
| N7 | C5 | C6 | 126.3° | 134.7° |
| N7 | C5 | C4 | 110.1° | 107.1° |
| C6 | C5 | C4 | 122.8° | 118.2° |
| C5 | C6 | N6 | 125.2° | 120.8° |
| C5 | C6 | N1 | 111.4° | 118.5° |
| C5 | C4 | N3 | 125.0° | 119.0° |
| N6 | C6 | N1 | 123.4° | 120.7° |
| C6 | N6 | HN61 | 125.1° | 120.0° |
| C6 | N6 | HN62 | 106.6° | 120.0° |
| C6 | N1 | C2 | 121.9° | 121.2° |
| HN61 | N6 | HN62 | 106.7° | 120.1° |
| N1 | C2 | N3 | 127.8° | 122.5° |
| N1 | C2 | H2 | 117.0° | 118.7° |
| N3 | C2 | H2 | 115.2° | 118.8° |
| C2 | N3 | C4 | 109.5° | 120.7° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O3P | 145.6° | 120.0° |
| O1P | P | O2P | O2' | 104.9° | 120.0° |
| O1P | P | O3P | O2' | 112.8° | 119.9° |
| O1P | P | O2P | HOP2 | 180.0° | 60.0° |
| O1P | P | O3P | HOP3 | 180.0° | 180.0° |
| O1P | P | O2' | C2' | 30.1° | 60.0° |
| O2P | P | O3P | O2' | 107.4° | 120.1° |
| O2P | P | O3P | HOP3 | 40.2° | 60.0° |
| O2P | P | O2' | C2' | 78.9° | 180.0° |
| O3P | P | O2P | HOP2 | 34.4° | 60.0° |
| O3P | P | O2' | C2' | 158.1° | 60.0° |
| O2' | P | O2P | HOP2 | 75.1° | 180.0° |
| O2' | P | O3P | HOP3 | 67.2° | 60.0° |
| P | O2' | C2' | C3' | 119.6° | 121.5° |
| P | O2' | C2' | C1' | 121.4° | 123.8° |
| P | O2' | C2' | H2' | 1.1° | 1.1° |
| O5' | C5' | C4' | H5'1 | 125.2° | 120.0° |
| O5' | C5' | C4' | H5'2 | 125.2° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 118.4° | 120.0° |
| O5' | C5' | C4' | O4' | 44.1° | 61.4° |
| O5' | C5' | C4' | C3' | 79.7° | 176.9° |
| O5' | C5' | C4' | H4' | 162.0° | 60.8° |
| C4' | C5' | H5'1 | H5'2 | 118.5° | 119.9° |
| C4' | C5' | O5' | HO5' | 180.0° | 180.0° |
| C5' | C4' | O4' | C3' | 124.3° | 119.0° |
| C5' | C4' | O4' | H4' | 117.4° | 122.3° |
| C5' | C4' | C3' | H4' | 117.4° | 122.3° |
| C5' | C4' | O4' | C1' | 147.5° | 159.5° |
| C5' | C4' | C3' | O3' | 125.6° | 98.3° |
| C5' | C4' | C3' | C2' | 120.5° | 142.9° |
| C5' | C4' | C3' | H3' | 5.4° | 24.2° |
| H5'1 | C5' | O5' | HO5' | 54.8° | 60.0° |
| H5'1 | C5' | C4' | O4' | 169.4° | 178.5° |
| H5'1 | C5' | C4' | C3' | 45.5° | 63.1° |
| H5'1 | C5' | C4' | H4' | 72.8° | 59.2° |
| H5'2 | C5' | O5' | HO5' | 54.7° | 60.0° |
| H5'2 | C5' | C4' | O4' | 81.1° | 58.6° |
| H5'2 | C5' | C4' | C3' | 155.0° | 56.9° |
| H5'2 | C5' | C4' | H4' | 36.8° | 179.2° |
| O4' | C4' | C3' | H4' | 118.0° | 118.8° |
| O4' | C4' | C3' | O3' | 109.8° | 142.8° |
| O4' | C4' | C3' | C2' | 4.1° | 24.0° |
| O4' | C4' | C3' | H3' | 130.1° | 94.7° |
| C4' | O4' | C1' | C2' | 39.9° | 40.5° |
| C4' | O4' | C1' | N9 | 163.4° | 159.3° |
| C4' | O4' | C1' | H1' | 79.8° | 78.5° |
| C3' | C4' | O4' | C1' | 23.1° | 40.5° |
| C4' | C3' | O3' | C2' | 105.4° | 114.8° |
| C4' | C3' | O3' | H3' | 126.9° | 122.5° |
| C4' | C3' | C2' | H3' | 124.7° | 118.7° |
| C4' | C3' | O3' | HO3' | 180.0° | 61.3° |
| C4' | C3' | C2' | O2' | 149.7° | 118.8° |
| C4' | C3' | C2' | C1' | 29.3° | 0.1° |
| C4' | C3' | C2' | H2' | 91.0° | 118.6° |
| H4' | C4' | O4' | C1' | 95.2° | 78.3° |
| H4' | C4' | C3' | O3' | 8.2° | 24.0° |
| H4' | C4' | C3' | C2' | 122.1° | 94.7° |
| H4' | C4' | C3' | H3' | 112.0° | 146.5° |
| O4' | C1' | C2' | C3' | 44.8° | 23.9° |
| O4' | C1' | C2' | O2' | 164.8° | 142.6° |
| O4' | C1' | C2' | N9 | 115.1° | 118.8° |
| O4' | C1' | C2' | H1' | 127.4° | 118.9° |
| O4' | C1' | C2' | H2' | 75.9° | 94.7° |
| O4' | C1' | N9 | H1' | 127.7° | 122.2° |
| O4' | C1' | N9 | C8 | 63.7° | 27.0° |
| O4' | C1' | N9 | C4 | 93.3° | 153.0° |
| O3' | C3' | C2' | H3' | 119.8° | 122.5° |
| O3' | C3' | C2' | O2' | 34.2° | 0.0° |
| O3' | C3' | C2' | C1' | 86.2° | 118.9° |
| O3' | C3' | C2' | H2' | 153.5° | 122.6° |
| C2' | C3' | O3' | HO3' | 74.5° | 176.1° |
| C3' | C2' | O2' | C1' | 119.0° | 114.7° |
| C3' | C2' | O2' | H2' | 120.7° | 122.6° |
| C3' | C2' | C1' | H2' | 120.7° | 118.6° |
| C3' | C2' | C1' | N9 | 159.9° | 142.7° |
| C3' | C2' | C1' | H1' | 82.6° | 95.0° |
| H3' | C3' | O3' | HO3' | 53.2° | 61.2° |
| H3' | C3' | C2' | O2' | 85.6° | 122.5° |
| H3' | C3' | C2' | C1' | 154.0° | 118.6° |
| H3' | C3' | C2' | H2' | 33.7° | 0.0° |
| O2' | C2' | C1' | H2' | 119.3° | 122.7° |
| O2' | C2' | C1' | N9 | 80.1° | 98.5° |
| O2' | C2' | C1' | H1' | 37.4° | 23.7° |
| C2' | C1' | N9 | H1' | 120.8° | 122.3° |
| C2' | C1' | N9 | C8 | 47.8° | 88.5° |
| C2' | C1' | N9 | C4 | 155.2° | 91.6° |
| H2' | C2' | C1' | N9 | 39.2° | 24.1° |
| H2' | C2' | C1' | H1' | 156.7° | 146.4° |
| C1' | N9 | C8 | C4 | 160.3° | 180.0° |
| C1' | N9 | C8 | N7 | 169.2° | 180.0° |
| C1' | N9 | C8 | H8 | 10.7° | 0.1° |
| C1' | N9 | C4 | C5 | 177.9° | 179.8° |
| C1' | N9 | C4 | N3 | 24.4° | 0.1° |
| H1' | C1' | N9 | C8 | 168.6° | 149.2° |
| H1' | C1' | N9 | C4 | 34.5° | 30.7° |
| N9 | C8 | N7 | H8 | 180.0° | 179.9° |
| N9 | C8 | N7 | C5 | 2.1° | 0.2° |
| C8 | N9 | C4 | C5 | 16.1° | 0.3° |
| C8 | N9 | C4 | N3 | 173.7° | 179.9° |
| C4 | N9 | C8 | N7 | 9.0° | 0.1° |
| C4 | N9 | C8 | H8 | 171.0° | 180.0° |
| N9 | C4 | C5 | N7 | 18.5° | 0.4° |
| N9 | C4 | C5 | C6 | 170.9° | 179.6° |
| N9 | C4 | C5 | N3 | 157.9° | 179.9° |
| N9 | C4 | N3 | C2 | 168.4° | 180.0° |
| C8 | N7 | C5 | C6 | 176.9° | 179.4° |
| C8 | N7 | C5 | C4 | 12.9° | 0.4° |
| H8 | C8 | N7 | C5 | 177.9° | 179.7° |
| N7 | C5 | C6 | C4 | 169.0° | 179.0° |
| N7 | C5 | C6 | N6 | 9.2° | 0.8° |
| N7 | C5 | C6 | N1 | 172.0° | 179.5° |
| N7 | C5 | C4 | N3 | 176.4° | 179.7° |
| C5 | C6 | N6 | N1 | 178.8° | 179.7° |
| C5 | C6 | N6 | HN61 | 180.0° | 179.7° |
| C5 | C6 | N6 | HN62 | 54.8° | 0.6° |
| C5 | C6 | N1 | C2 | 2.4° | 0.3° |
| C6 | C5 | C4 | N3 | 13.0° | 0.5° |
| C4 | C5 | C6 | N6 | 178.2° | 179.7° |
| C4 | C5 | C6 | N1 | 3.0° | 0.6° |
| C5 | C4 | N3 | C2 | 15.0° | 0.2° |
| C6 | N6 | HN61 | HN62 | 125.2° | 179.8° |
| N6 | C6 | N1 | C2 | 176.5° | 180.0° |
| N1 | C6 | N6 | HN61 | 1.2° | 0.0° |
| N1 | C6 | N6 | HN62 | 124.0° | 179.7° |
| C6 | N1 | C2 | N3 | 1.3° | 0.0° |
| C6 | N1 | C2 | H2 | 178.7° | 180.0° |
| N1 | C2 | N3 | H2 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 9.6° | 0.0° |
| H2 | C2 | N3 | C4 | 170.5° | 180.0° |
