Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_000325

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1Csing1.35Å1.35Å
N1C2sing1.47Å1.50Å
N1C6sing1.47Å1.52Å
COdoub1.22Å1.24Å
CNsing1.35Å1.34Å
C2C3sing1.53Å1.52Å
C3N4sing1.47Å1.46Å
N4CMsing1.47Å1.46Å
N4C5sing1.47Å1.47Å
C5C6sing1.54Å1.54Å
NCAsing1.46Å1.47Å
CAC1sing1.51Å1.53Å
CACBsing1.53Å1.55Å
C1O1doub1.21Å1.24Å
C1N2sing1.35Å1.33Å
CBCGsing1.51Å1.51Å
CGCD1doub1.38Å1.39ÅAromatic
CGCD2sing1.38Å1.39ÅAromatic
CD1CE1sing1.38Å1.40ÅAromatic
CD2CE2doub1.38Å1.40ÅAromatic
CE1CZdoub1.38Å1.39ÅAromatic
CE2CZsing1.38Å1.39ÅAromatic
C11C21sing1.53Å1.54Å
C11S1sing1.81Å1.84Å
C21C31sing1.53Å1.57Å
C31N2sing1.46Å1.46Å
C31C4sing1.53Å1.54Å
C4C51sing1.53Å1.54Å
C51C1'sing1.51Å1.52Å
C1'C2'doub1.38Å1.40ÅAromatic
C1'C6'sing1.38Å1.40ÅAromatic
C2'C3'sing1.38Å1.39ÅAromatic
C3'C4'doub1.38Å1.40ÅAromatic
C4'C5'sing1.38Å1.39ÅAromatic
C5'C6'doub1.38Å1.39ÅAromatic
C12C22doub1.38Å1.39ÅAromatic
C12C61sing1.38Å1.39ÅAromatic
C22C32sing1.38Å1.40ÅAromatic
C32C41doub1.38Å1.42ÅAromatic
C41S1sing1.76Å1.77Å
C41C52sing1.38Å1.41ÅAromatic
S1O11doub1.42Å1.60Å
S1O2doub1.42Å1.58Å
C52C61doub1.38Å1.40ÅAromatic
C2H21sing1.09Å1.10Å
C2H22sing1.09Å1.10Å
C3H31sing1.09Å1.10Å
C3H32sing1.09Å1.10Å
CMHM1sing1.09Å1.10Å
CMHM2sing1.09Å1.10Å
CMHM3sing1.09Å1.10Å
C5H51sing1.09Å1.10Å
C5H52sing1.09Å1.10Å
C6H61sing1.09Å1.10Å
C6H62sing1.09Å1.10Å
NHsing0.97Å1.00Å
CAHAsing1.09Å1.10Å
CBHB2sing1.09Å1.10Å
CBHB3sing1.09Å1.10Å
CD1HD1sing1.08Å1.08Å
CD2HD2sing1.08Å1.08Å
CE1HE1sing1.08Å1.08Å
CE2HE2sing1.08Å1.08Å
CZHZsing1.08Å1.08Å
C11H11sing1.09Å1.10Å
C11H221sing1.09Å1.10Å
C21H211sing1.09Å1.10Å
C21H24sing1.09Å1.10Å
C31H3sing1.09Å1.10Å
N2HN2sing0.97Å1.00Å
C4H41sing1.09Å1.10Å
C4H42sing1.09Å1.10Å
C51H511sing1.09Å1.10Å
C51H521sing1.09Å1.10Å
C2'H2'sing1.08Å1.08Å
C3'H3'sing1.08Å1.08Å
C4'H4'sing1.08Å1.08Å
C5'H5'sing1.08Å1.08Å
C6'H6'sing1.08Å1.08Å
C12H1sing1.08Å1.08Å
C22H2sing1.08Å1.08Å
C32H33sing1.08Å1.08Å
C52H5sing1.08Å1.08Å
C61H6sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CN1C2123.1°120.9°
CN1C6123.2°120.8°
N1CO119.6°120.0°
N1CN120.0°120.0°
C2N1C6113.7°118.3°
N1C2C3113.8°108.5°
N1C2H21108.0°109.7°
N1C2H22108.0°109.6°
N1C6C5114.3°108.3°
N1C6H61107.9°109.6°
N1C6H62107.9°109.7°
OCN119.8°120.0°
CNCA120.1°120.0°
CNH119.9°120.0°
C2C3N4111.6°109.4°
C3C2H21108.1°109.6°
C3C2H22108.1°109.6°
C2C3H31108.8°109.5°
C2C3H32108.8°109.5°
C3N4CM107.1°111.0°
C3N4C5112.2°111.3°
N4C3H31108.8°109.5°
N4C3H32108.8°109.5°
CMN4C5107.6°111.0°
N4CMHM1109.5°109.5°
N4CMHM2109.5°109.5°
N4CMHM3109.5°109.5°
N4C5C6112.7°109.3°
N4C5H51108.4°109.5°
N4C5H52108.4°109.5°
C6C5H51108.4°109.6°
C6C5H52108.4°109.4°
C5C6H61107.9°109.8°
C5C6H62107.9°109.7°
NCAC1106.7°109.5°
NCACB112.8°109.5°
CANH119.9°120.0°
NCAHA108.8°109.5°
C1CACB108.6°109.4°
CAC1O1120.1°120.0°
CAC1N2116.2°120.0°
C1CAHA113.1°109.4°
CACBCG114.6°109.5°
CBCAHA107.0°109.5°
CACBHB2107.8°109.5°
CACBHB3107.8°109.5°
O1C1N2122.8°120.0°
C1N2C31121.3°120.0°
C1N2HN2119.4°120.0°
CBCGCD1121.1°120.0°
CBCGCD2120.2°120.0°
CGCBHB2107.8°109.5°
CGCBHB3107.8°109.5°
CD1CGCD2118.6°120.0°
CGCD1CE1120.6°120.0°
CGCD1HD1119.7°120.0°
CGCD2CE2121.2°120.0°
CGCD2HD2119.4°120.0°
CD1CE1CZ120.0°120.0°
CE1CD1HD1119.7°120.0°
CD1CE1HE1120.0°120.0°
CD2CE2CZ119.8°120.0°
CE2CD2HD2119.4°120.0°
CD2CE2HE2120.1°120.0°
CE1CZCE2119.7°120.0°
CZCE1HE1120.0°120.0°
CE1CZHZ120.2°120.0°
CZCE2HE2120.1°120.0°
CE2CZHZ120.1°120.0°
C21C11S1107.0°109.5°
C11C21C31114.4°109.5°
C21C11H11110.3°109.4°
C21C11H221110.3°109.5°
C11C21H211107.9°109.5°
C11C21H24107.8°109.5°
C11S1C41101.8°104.5°
C11S1O11121.2°110.6°
C11S1O2111.5°110.6°
S1C11H11110.3°109.5°
S1C11H221110.3°109.5°
C21C31N2112.5°109.5°
C21C31C4112.9°109.5°
C31C21H211107.9°109.5°
C31C21H24107.9°109.4°
C21C31H3105.0°109.5°
N2C31C4110.0°109.4°
N2C31H3108.2°109.5°
C31N2HN2119.4°120.0°
C31C4C51110.4°109.5°
C4C31H3107.8°109.4°
C31C4H41109.2°109.5°
C31C4H42109.2°109.4°
C4C51C1'115.2°109.5°
C51C4H41109.2°109.5°
C51C4H42109.2°109.5°
C4C51H511107.6°109.5°
C4C51H521107.6°109.5°
C51C1'C2'120.0°120.0°
C51C1'C6'120.4°120.0°
C1'C51H511107.6°109.5°
C1'C51H521107.6°109.5°
C2'C1'C6'119.6°120.0°
C1'C2'C3'120.1°119.9°
C1'C2'H2'120.0°120.0°
C1'C6'C5'120.1°120.0°
C1'C6'H6'119.9°120.0°
C2'C3'C4'119.9°120.0°
C3'C2'H2'120.0°120.0°
C2'C3'H3'120.0°120.0°
C3'C4'C5'120.3°120.0°
C4'C3'H3'120.0°120.0°
C3'C4'H4'119.8°120.0°
C4'C5'C6'120.0°120.0°
C5'C4'H4'119.8°120.0°
C4'C5'H5'120.0°120.0°
C6'C5'H5'120.0°120.0°
C5'C6'H6'120.0°120.0°
C22C12C61120.1°120.0°
C12C22C32120.1°120.0°
C22C12H1119.9°119.9°
C12C22H2120.0°120.0°
C12C61C52120.1°120.0°
C61C12H1119.9°120.0°
C12C61H6120.0°120.0°
C22C32C41121.1°120.0°
C32C22H2119.9°120.0°
C22C32H33119.4°120.0°
C32C41S1121.2°120.0°
C32C41C52117.3°120.0°
C41C32H33119.4°120.0°
S1C41C52119.8°120.0°
C41S1O11108.1°104.3°
C41S1O2104.8°104.2°
C41C52C61121.2°120.0°
C41C52H5119.4°120.0°
O11S1O2108.1°121.0°
C61C52H5119.4°120.0°
C52C61H6119.9°120.0°
H21C2H22110.9°109.7°
H31C3H32110.1°109.5°
HM1CMHM2109.4°109.5°
HM1CMHM3109.4°109.5°
HM2CMHM3109.5°109.4°
H51C5H52110.5°109.5°
H61C6H62111.0°109.8°
HB2CBHB3111.1°109.5°
H11C11H221108.7°109.5°
H211C21H24111.0°109.5°
H41C4H42109.8°109.5°
H511C51H521111.3°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CN1C2C6179.6°179.7°
N1CON171.1°180.0°
CN1C2C3137.3°128.8°
CN1C6C5140.8°128.8°
N1CNCA179.0°174.7°
CN1C2H2117.3°9.1°
CN1C2H22102.8°111.5°
CN1C6H6199.2°111.5°
CN1C6H6220.8°9.1°
N1CNH1.0°5.3°
C2N1CO169.1°174.8°
C2N1CN2.0°5.2°
N1C2C3H21120.0°119.8°
N1C2C3H22120.0°119.7°
N1C2C3N452.7°53.8°
C2N1C6C539.5°51.5°
N1C2H21H22118.2°120.5°
N1C2C3H3167.3°66.1°
N1C2C3H32172.7°173.8°
C2N1C6H6180.4°68.3°
C2N1C6H62159.5°171.1°
C6N1CO10.5°5.5°
C6N1CN178.4°174.5°
C6N1C2C343.1°51.4°
N1C6C5N445.5°54.1°
N1C6C5H61120.0°119.6°
N1C6C5H62120.0°119.6°
C6N1C2H21163.1°171.2°
C6N1C2H2276.9°68.3°
N1C6C5H5174.5°65.9°
N1C6C5H52165.5°173.9°
N1C6H61H62118.0°120.5°
OCNCA9.9°5.3°
OCNH170.1°174.7°
CNCAH180.0°179.9°
CNCAC163.9°155.0°
CNCACB177.0°85.0°
CNCAHA58.4°35.0°
C2C3N4H31120.0°119.9°
C2C3N4H32120.0°120.0°
C2C3N4CM176.8°172.8°
C2C3N4C558.9°63.1°
C3C2H21H22118.2°120.4°
C2C3H31H32119.2°120.1°
C3N4CMC5120.9°124.3°
C3N4C5C655.4°63.3°
N4C3C2H21172.7°173.6°
N4C3C2H2267.3°65.9°
N4C3H31H32119.1°120.1°
C3N4CMHM1180.0°60.0°
C3N4CMHM260.0°180.0°
C3N4CMHM360.0°60.0°
C3N4C5H5164.6°56.8°
C3N4C5H52175.4°176.9°
CMN4C5C6173.0°172.6°
CMN4C3H3156.8°67.3°
CMN4C3H3263.2°52.8°
N4CMHM1HM2120.0°120.0°
N4CMHM1HM3120.0°120.0°
N4CMHM2HM3120.0°120.0°
CMN4C5H5153.0°67.3°
CMN4C5H5267.0°52.8°
N4C5C6H51120.0°120.0°
N4C5C6H52120.0°119.9°
C5N4C3H3161.1°56.8°
C5N4C3H32178.9°176.9°
C5N4CMHM159.1°175.7°
C5N4CMHM260.9°55.7°
C5N4CMHM3179.1°64.2°
N4C5H51H52118.7°120.1°
N4C5C6H6174.5°65.5°
N4C5C6H62165.5°173.7°
C6C5H51H52118.7°120.1°
C5C6H61H62118.0°120.7°
NCAC1CB121.9°120.0°
NCAC1HA119.6°120.0°
NCACBHA119.6°120.0°
NCAC1O142.2°0.0°
NCAC1N2126.8°180.0°
NCACBCG57.7°65.0°
NCACBHB262.4°55.0°
NCACBHB3177.6°175.0°
C1CACBHA122.3°120.0°
CAC1O1N2168.2°179.9°
C1CACBCG175.7°175.0°
CAC1N2C31173.4°180.0°
C1CANH116.1°25.0°
C1CACBHB255.7°65.0°
C1CACBHB364.3°55.0°
CAC1N2HN26.6°0.1°
CBCAC1O179.7°120.0°
CBCAC1N2111.4°60.0°
CACBCGHB2120.0°120.0°
CACBCGHB3120.0°120.0°
CACBCGCD140.9°90.0°
CACBCGCD2140.4°90.3°
CBCANH3.0°94.9°
CACBHB2HB3117.9°120.0°
O1C1N2C3118.0°0.1°
O1C1CAHA161.7°120.0°
O1C1N2HN2162.0°180.0°
C1N2C31C21104.3°155.0°
C1N2C31HN2180.0°179.9°
C1N2C31C4128.8°85.0°
N2C1CAHA7.2°59.9°
C1N2C31H311.3°34.9°
CBCGCD1CD2178.7°179.7°
CBCGCD1CE1178.8°180.0°
CBCGCD2CE2178.7°180.0°
CGCBCAHA62.0°55.1°
CGCBHB2HB3117.9°120.0°
CBCGCD1HD11.2°0.0°
CBCGCD2HD21.2°0.0°
CGCD1CE1HD1180.0°180.0°
CD1CGCD2CE20.0°0.3°
CGCD1CE1CZ0.1°0.0°
CD1CGCBHB2160.9°30.0°
CD1CGCBHB379.1°150.0°
CD1CGCD2HD2180.0°179.7°
CGCD1CE1HE1179.9°179.9°
CD2CGCD1CE10.1°0.3°
CGCD2CE2HD2180.0°180.0°
CGCD2CE2CZ0.0°0.0°
CD2CGCBHB220.4°149.7°
CD2CGCBHB399.6°29.7°
CD2CGCD1HD1179.9°179.7°
CGCD2CE2HE2179.9°180.0°
CD1CE1CZHE1180.0°179.9°
CD1CE1CZCE20.1°0.3°
CD1CE1CZHZ179.9°180.0°
CD2CE2CZCE10.0°0.3°
CD2CE2CZHE2180.0°179.9°
CD2CE2CZHZ180.0°180.0°
CE1CZCE2HZ180.0°179.7°
CZCE1CD1HD1179.9°180.0°
CE1CZCE2HE2180.0°179.7°
CZCE2CD2HD2180.0°180.0°
CE2CZCE1HE1179.9°179.8°
C21C11S1H11120.0°120.0°
C21C11S1H221120.0°120.0°
C11C21C31H211120.0°120.0°
C11C21C31H24120.0°120.0°
C11C21C31N269.1°65.0°
C11C21C31C456.2°175.0°
C21C11S1C41153.2°180.0°
C21C11S1O1187.0°68.4°
C21C11S1O241.9°68.4°
C21C11H11H221121.0°120.0°
C11C21H211H24117.9°120.0°
C11C21C31H3173.4°55.0°
S1C11C21C31107.7°180.0°
C11S1C41C32175.2°90.0°
C11S1C41O11128.7°116.1°
C11S1C41O2116.2°116.1°
C11S1C41C5219.9°90.0°
C11S1O11O2130.4°131.6°
S1C11H11H221121.0°120.0°
S1C11C21H21112.3°60.0°
S1C11C21H24132.3°60.0°
C21C31N2C4126.8°120.0°
C21C31N2H3115.6°120.0°
C21C31C4H3115.6°120.0°
C21C31C4C51175.1°175.0°
C31C21C11H1112.3°60.0°
C31C21C11H221132.3°60.0°
C31C21H211H24118.0°120.0°
C21C31N2HN275.7°24.9°
C21C31C4H4164.9°65.0°
C21C31C4H4255.1°55.0°
N2C31C4H3117.8°120.0°
N2C31C4C5158.3°65.0°
N2C31C21H211170.9°55.0°
N2C31C21H2450.9°175.0°
N2C31C4H4161.7°55.0°
N2C31C4H42178.3°175.0°
C31C4C51H41120.0°120.0°
C31C4C51H42120.0°119.9°
C31C4C51C1'178.8°180.0°
C4C31C21H21163.8°65.0°
C4C31C21H24176.2°55.0°
C4C31N2HN251.2°95.1°
C31C4H41H42119.6°120.0°
C31C4C51H51158.8°60.0°
C31C4C51H52161.2°60.0°
C4C51C1'H511120.0°120.0°
C4C51C1'H521120.0°120.0°
C4C51C1'C2'96.8°90.0°
C4C51C1'C6'83.6°90.3°
C51C4C31H359.5°55.0°
C51C4H41H42119.6°120.0°
C4C51H511H521117.6°120.0°
C51C1'C2'C6'179.6°179.7°
C51C1'C2'C3'179.6°180.0°
C51C1'C6'C5'179.5°179.8°
C1'C51C4H4161.2°60.0°
C1'C51C4H4258.8°60.1°
C1'C51H511H521117.6°120.0°
C51C1'C2'H2'0.4°0.0°
C51C1'C6'H6'0.4°0.0°
C1'C2'C3'H2'180.0°180.0°
C1'C2'C3'C4'0.1°0.0°
C2'C1'C6'C5'0.0°0.5°
C2'C1'C51H511143.2°30.0°
C2'C1'C51H52123.2°150.0°
C1'C2'C3'H3'180.0°179.9°
C2'C1'C6'H6'180.0°179.7°
C6'C1'C2'C3'0.0°0.3°
C1'C6'C5'C4'0.1°0.4°
C1'C6'C5'H6'180.0°179.8°
C6'C1'C51H51136.4°149.7°
C6'C1'C51H521156.4°29.7°
C6'C1'C2'H2'179.9°179.7°
C1'C6'C5'H5'179.9°179.7°
C2'C3'C4'H3'180.0°180.0°
C2'C3'C4'C5'0.0°0.0°
C2'C3'C4'H4'180.0°180.0°
C3'C4'C5'H4'180.0°180.0°
C3'C4'C5'C6'0.1°0.2°
C4'C3'C2'H2'179.9°180.0°
C3'C4'C5'H5'179.9°180.0°
C4'C5'C6'H5'180.0°179.9°
C5'C4'C3'H3'180.0°180.0°
C4'C5'C6'H6'179.9°179.8°
C6'C5'C4'H4'179.9°179.8°
C22C12C61H1180.0°179.8°
C12C22C32H2180.0°179.9°
C12C22C32C410.7°0.1°
C22C12C61C520.4°0.0°
C12C22C32H33179.3°180.0°
C22C12C61H6179.6°180.0°
C61C12C22C320.1°0.0°
C12C61C52C410.4°0.0°
C12C61C52H6180.0°180.0°
C61C12C22H2179.9°179.9°
C12C61C52H5179.6°180.0°
C22C32C41H33180.0°179.9°
C22C32C41S1165.9°179.9°
C22C32C41C520.6°0.1°
C32C22C12H1179.9°179.8°
C32C41S1C52164.9°180.0°
C32C41S1O1156.2°26.1°
C32C41S1O258.9°153.9°
C32C41C52C610.1°0.0°
C41C32C22H2179.4°180.0°
C32C41C52H5179.9°180.0°
C41S1O11O2112.9°116.6°
S1C41C52C61165.6°180.0°
C41S1C11H1133.2°60.0°
C41S1C11H22186.9°60.0°
S1C41C32H3314.1°0.0°
S1C41C52H514.4°0.0°
C52C41S1O11108.7°153.9°
C52C41S1O2136.2°26.1°
C41C52C61H5180.0°180.0°
C52C41C32H33179.4°180.0°
C41C52C61H6179.6°180.0°
O11S1C11H11153.0°171.6°
O11S1C11H22133.0°51.6°
O2S1C11H1178.1°51.6°
O2S1C11H221161.9°171.6°
C52C61C12H1179.6°179.7°
H21C2C3H3152.7°53.6°
H21C2C3H3267.3°66.4°
H22C2C3H31172.7°174.1°
H22C2C3H3252.7°54.1°
HM1CMHM2HM3120.0°119.9°
H51C5C6H61165.5°174.4°
H51C5C6H6245.5°53.7°
H52C5C6H6145.5°54.3°
H52C5C6H6274.5°66.4°
HNCAHA121.6°145.0°
HACACBHB2178.0°175.0°
HACACBHB358.0°64.9°
HD1CD1CE1HE10.1°0.1°
HD2CD2CE2HE20.0°0.1°
HE1CE1CZHZ0.1°0.1°
HE2CE2CZHZ0.0°0.1°
H11C11C21H211132.4°60.0°
H11C11C21H24107.7°180.0°
H221C11C21H211107.6°180.0°
H221C11C21H2412.3°60.0°
H211C21C31H353.4°175.0°
H24C21C31H366.6°65.0°
H3C31N2HN2168.7°145.0°
H3C31C4H41179.5°175.0°
H3C31C4H4260.5°65.0°
H41C4C51H511178.8°180.0°
H41C4C51H52158.8°60.0°
H42C4C51H51161.2°59.9°
H42C4C51H521178.8°179.9°
H2'C2'C3'H3'0.0°0.1°
H3'C3'C4'H4'0.0°0.0°
H4'C4'C5'H5'0.1°0.1°
H5'C5'C6'H6'0.1°0.1°
H1C12C22H20.1°0.3°
H1C12C61H60.4°0.2°
H2C22C32H330.6°0.1°
H5C52C61H60.4°0.0°

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon