1VA2
 
 | | Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 2) | | Descriptor: | Transcription factor Sp1, ZINC ION | | Authors: | Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y. | | Deposit date: | 2004-02-07 | | Release date: | 2005-02-08 | | Last modified: | 2023-12-27 | | Method: | SOLUTION NMR | | Cite: | NMR structure of transcription factor Sp1 DNA binding domain
Biochemistry, 43, 2004
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1VA3
 | | Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 3) | | Descriptor: | Transcription factor Sp1, ZINC ION | | Authors: | Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y. | | Deposit date: | 2004-02-07 | | Release date: | 2005-02-08 | | Last modified: | 2023-12-27 | | Method: | SOLUTION NMR | | Cite: | NMR structure of transcription factor Sp1 DNA binding domain
Biochemistry, 43, 2004
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1VA1
 | | Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 1) | | Descriptor: | Transcription factor Sp1, ZINC ION | | Authors: | Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y. | | Deposit date: | 2004-02-07 | | Release date: | 2005-02-08 | | Last modified: | 2023-12-27 | | Method: | SOLUTION NMR | | Cite: | NMR structure of transcription factor Sp1 DNA binding domain
Biochemistry, 43, 2004
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4EFN
 | | Crystal structure of H-Ras Q61L in complex with GppNHp (state 1) | | Descriptor: | GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | | Authors: | Muraoka, S, Shima, F, Araki, M, Inoue, T, Yoshimoto, A, Ijiri, Y, Seki, N, Tamura, A, Kumasaka, T, Yamamoto, M, Kataoka, T. | | Deposit date: | 2012-03-30 | | Release date: | 2012-05-16 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants
Febs Lett., 586, 2012
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4EFL
 | | Crystal structure of H-Ras WT in complex with GppNHp (state 1) | | Descriptor: | GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | | Authors: | Muraoka, S, Shima, F, Araki, M, Inoue, T, Yoshimoto, A, Ijiri, Y, Seki, N, Tamura, A, Kumasaka, T, Yamamoto, M, Kataoka, T. | | Deposit date: | 2012-03-30 | | Release date: | 2012-05-16 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants
Febs Lett., 586, 2012
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3PIR
 | | Crystal structure of M-RasD41E in complex with GppNHp (type 1) | | Descriptor: | MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein M-Ras | | Authors: | Muraoka, S, Matsumoto, K, Shima, F, Hu, L, Ijiri, Y, Hirai, R, Liao, J, Kataoka, T. | | Deposit date: | 2010-11-07 | | Release date: | 2011-03-09 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.75 Å) | | Cite: | Crystal structure of M-RasD41E in complex with GppNHp (type 1)
To be Published
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3PIT
 | | Crystal structure of M-RasD41E in complex with GppNHp (type 2) | | Descriptor: | MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein M-Ras | | Authors: | Muraoka, S, Matsumoto, K, Shima, F, Hu, L, Ijiri, Y, Hirai, R, Liao, J, Kataoka, T. | | Deposit date: | 2010-11-08 | | Release date: | 2011-03-09 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.55 Å) | | Cite: | Crystal structure of M-RasD41E in complex with GppNHp (type 2)
To be Published
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1M54
 | | CYSTATHIONINE-BETA SYNTHASE: REDUCED VICINAL THIOLS | | Descriptor: | CYSTATHIONINE BETA-SYNTHASE, PROTOPORPHYRIN IX CONTAINING FE, PYRIDOXAL-5'-PHOSPHATE | | Authors: | Taoka, S, Lepore, B.W, Kabil, O, Ojha, S, Ringe, D, Banerjee, R. | | Deposit date: | 2002-07-08 | | Release date: | 2002-08-14 | | Last modified: | 2021-10-27 | | Method: | X-RAY DIFFRACTION (2.9 Å) | | Cite: | HUMAN CYSTATHIONINE BETA-SYNTHASE IS A HEME SENSOR PROTEIN. EVIDENCE THAT THE
REDOX SENSOR IS HEME AND NOT THE VICINAL CYSTEINES IN THE CXXC MOTIF SEEN IN THE CRYSTAL STRUCTURE OF THE TRUNCATED ENZYME
BIOCHEMISTRY, 41, 2002
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1FEX
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4EFM
 | | Crystal structure of H-Ras G12V in complex with GppNHp (state 1) | | Descriptor: | GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | | Authors: | Muraoka, S, Shima, F, Araki, M, Inoue, T, Yoshimoto, A, Ijiri, Y, Seki, N, Tamura, A, Kumasaka, T, Yamamoto, M, Kataoka, T. | | Deposit date: | 2012-03-30 | | Release date: | 2012-05-16 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants
Febs Lett., 586, 2012
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3DXV
 | | The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae | | Descriptor: | Alpha-amino-epsilon-caprolactam racemase, PYRIDOXAL-5'-PHOSPHATE | | Authors: | Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T. | | Deposit date: | 2008-07-25 | | Release date: | 2009-02-17 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.21 Å) | | Cite: | The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae
Biochemistry, 48, 2009
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3DXW
 | | The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae complexed with epsilon caprolactam | | Descriptor: | Alpha-amino-epsilon-caprolactam racemase, PYRIDOXAL-5'-PHOSPHATE, azepan-2-one | | Authors: | Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T. | | Deposit date: | 2008-07-25 | | Release date: | 2009-07-28 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.41 Å) | | Cite: | The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae
Biochemistry, 48, 2009
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6ESF
 | | Nucleosome : Class 1 | | Descriptor: | DNA (147-MER), Histone H2A, Histone H2B 1.1, ... | | Authors: | Bilokapic, S, Halic, M. | | Deposit date: | 2017-10-20 | | Release date: | 2017-12-20 | | Last modified: | 2019-10-23 | | Method: | ELECTRON MICROSCOPY (3.7 Å) | | Cite: | Histone octamer rearranges to adapt to DNA unwrapping.
Nat. Struct. Mol. Biol., 25, 2018
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6ESG
 | | Nucleosome breathing : Class 2 | | Descriptor: | DNA (141-MER), Histone H2A, Histone H2B 1.1, ... | | Authors: | Bilokapic, S, Halic, M. | | Deposit date: | 2017-10-20 | | Release date: | 2017-12-20 | | Last modified: | 2019-10-23 | | Method: | ELECTRON MICROSCOPY (5.4 Å) | | Cite: | Histone octamer rearranges to adapt to DNA unwrapping.
Nat. Struct. Mol. Biol., 25, 2018
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6ESH
 | | Nucleosome breathing : Class 3 | | Descriptor: | DNA (137-MER), Histone H2A, Histone H2B 1.1, ... | | Authors: | Bilokapic, S, Halic, M. | | Deposit date: | 2017-10-20 | | Release date: | 2017-12-20 | | Last modified: | 2019-10-23 | | Method: | ELECTRON MICROSCOPY (5.1 Å) | | Cite: | Histone octamer rearranges to adapt to DNA unwrapping.
Nat. Struct. Mol. Biol., 25, 2018
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6ESI
 | | Nucleosome breathing : Class 4 | | Descriptor: | DNA (133-MER), Histone H2A, Histone H2B 1.1, ... | | Authors: | Bilokapic, S, Halic, M. | | Deposit date: | 2017-10-20 | | Release date: | 2017-12-20 | | Last modified: | 2019-10-23 | | Method: | ELECTRON MICROSCOPY (6.3 Å) | | Cite: | Histone octamer rearranges to adapt to DNA unwrapping.
Nat. Struct. Mol. Biol., 25, 2018
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6FQ5
 | | Class 1 : canonical nucleosome | | Descriptor: | DNA (147-MER), Histone H2A, Histone H2B, ... | | Authors: | Bilokapic, S, Halic, M. | | Deposit date: | 2018-02-13 | | Release date: | 2018-04-18 | | Last modified: | 2019-10-23 | | Method: | ELECTRON MICROSCOPY (3.8 Å) | | Cite: | Structural rearrangements of the histone octamer translocate DNA.
Nat Commun, 9, 2018
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6FQ8
 | | Class 3 : translocated nucleosome | | Descriptor: | DNA (147-MER), Histone H2A, Histone H2B, ... | | Authors: | Bilokapic, S, Halic, M. | | Deposit date: | 2018-02-13 | | Release date: | 2018-04-18 | | Last modified: | 2019-12-11 | | Method: | ELECTRON MICROSCOPY (4.8 Å) | | Cite: | Structural rearrangements of the histone octamer translocate DNA.
Nat Commun, 9, 2018
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6FQ6
 | | Class 2 : distorted nucleosome | | Descriptor: | DNA (147-MER), Histone H2A, Histone H2B, ... | | Authors: | Bilokapic, S, Halic, M. | | Deposit date: | 2018-02-13 | | Release date: | 2018-04-18 | | Last modified: | 2019-10-23 | | Method: | ELECTRON MICROSCOPY (4 Å) | | Cite: | Structural rearrangements of the histone octamer translocate DNA.
Nat Commun, 9, 2018
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1IZ1
 | | CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR | | Descriptor: | LysR-type regulatory protein | | Authors: | Muraoka, S, Okumura, R, Ogawa, N, Miyashita, K, Senda, T. | | Deposit date: | 2002-09-18 | | Release date: | 2003-05-06 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Crystal Structure of a Full-length LysR-type Transcriptional Regulator, CbnR: Unusual Combination of Two Subunit Forms and Molecular Bases for Causing and Changing DNA Bend
J.Mol.Biol., 328, 2003
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4I0O
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4FCC
 | | Glutamate dehydrogenase from E. coli | | Descriptor: | Glutamate dehydrogenase | | Authors: | Bilokapic, S, Schwartz, T.U. | | Deposit date: | 2012-05-24 | | Release date: | 2012-09-26 | | Last modified: | 2024-02-28 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Molecular basis for Nup37 and ELY5/ELYS recruitment to the nuclear pore complex.
Proc.Natl.Acad.Sci.USA, 109, 2012
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4FHM
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4FHN
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4FHL
 | | Nucleoporin Nup37 from Schizosaccharomyces pombe | | Descriptor: | 1,2-ETHANEDIOL, 1,4-BUTANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ... | | Authors: | Bilokapic, S, Schwartz, T.U. | | Deposit date: | 2012-06-06 | | Release date: | 2012-09-26 | | Last modified: | 2024-02-28 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | Molecular basis for Nup37 and ELY5/ELYS recruitment to the nuclear pore complex.
Proc.Natl.Acad.Sci.USA, 109, 2012
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