PDB: 113 resultsInfo pagesStatus searchChemie searchBIRD

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7K06	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: CYTIDINE-5'-MONOPHOSPHATE, ERI1 exoribonuclease 3, MAGNESIUM ION Authors: Thapar, R, Arvai, A.S, Tainer, J.A. Deposit date: 2020-09-03 Release date: 2021-10-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3'- 5' exoribonucleases To Be Published
7LPY	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2021-02-12 Release date: 2022-02-16 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
7LPZ	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2021-02-12 Release date: 2022-02-16 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
7LQ0	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2021-02-12 Release date: 2022-02-16 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
2F96	2.1 A crystal structure of Pseudomonas aeruginosa rnase T (Ribonuclease T) Descriptor: MAGNESIUM ION, Ribonuclease T Authors: Zheng, H, Chruszcz, M, Cymborowski, M, Wang, Y, Gorodichtchenskaia, E, Skarina, T, Guthrie, J, Savchenko, A, Edwards, A, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG) Deposit date: 2005-12-05 Release date: 2006-02-14 Last modified: 2022-04-13 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Crystal Structure of RNase T, an Exoribonuclease Involved in tRNA Maturation and End Turnover. Structure, 15, 2007
4FZX	Exonuclease X in complex with 3' overhanging duplex DNA Descriptor: DNA (5'-D(P*CP*GP*GP*AP*TP*CP*CP*AP*CP*AP*AP*TP*GP*AP*CP*CP*T)-3'), DNA (5'-D(P*GP*TP*CP*AP*TP*TP*GP*TP*GP*GP*AP*TP*CP*CP*GP*AP*G)-3'), Exodeoxyribonuclease 10, ... Authors: Wang, T, Sun, H, Cheng, F, Bi, L, Jiang, T. Deposit date: 2012-07-08 Release date: 2013-07-03 Last modified: 2013-10-09 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Recognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease Nucleic Acids Res., 41, 2013
4FZY	Exonuclease X in complex with 12bp blunt-ended dsDNA Descriptor: DNA (5'-D(*TP*GP*TP*AP*GP*AP*TP*TP*CP*GP*AP*G)-3'), DNA (5'-D(P*CP*TP*CP*GP*AP*AP*TP*CP*TP*AP*CP*A)-3'), Exodeoxyribonuclease 10, ... Authors: Wang, T, Sun, H, Cheng, F, Bi, L, Jiang, T. Deposit date: 2012-07-08 Release date: 2013-07-03 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Recognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease Nucleic Acids Res., 41, 2013
4FZZ	Exonuclease X in complex with 5' overhanging duplex DNA Descriptor: DNA (5'-D(*GP*TP*CP*AP*TP*TP*GP*TP*GP*GP*AP*TP*CP*CP*GP*AP*G)-3'), Exodeoxyribonuclease 10, SODIUM ION Authors: Wang, T, Sun, H, Cheng, F, Bi, L, Jiang, T. Deposit date: 2012-07-08 Release date: 2013-07-03 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Recognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease Nucleic Acids Res., 41, 2013
2GBZ	The Crystal Structure of XC847 from Xanthomonas campestris: a 3-5 Oligoribonuclease of DnaQ fold family with a Novel Opposingly-Shifted Helix Descriptor: MAGNESIUM ION, Oligoribonuclease Authors: Chin, K.H, Yang, C.Y, Chou, C.C, Wang, A.H.J, Chou, S.H. Deposit date: 2006-03-12 Release date: 2007-01-16 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The crystal structure of XC847 from Xanthomonas campestris: a 3'-5' oligoribonuclease of DnaQ fold family with a novel opposingly shifted helix Proteins, 65, 2006
2GUI	Structure and Function of Cyclized Versions of the Proofreading Exonuclease Subunit of E. coli DNA Polymerase III Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, DNA polymerase III epsilon subunit, ... Authors: Park, A.Y, Carr, P.D, Ollis, D.L, Dixon, N.E. Deposit date: 2006-04-30 Release date: 2007-03-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure and Function of Cyclized Versions of the Proofreading Exonuclease Subunit E. coli DNA Polymerase III To be Published
3CG7	Crystal structure of cell-death related nuclease 4 (CRN-4) Descriptor: Cell death-related nuclease 4, ZINC ION Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2008-03-05 Release date: 2008-12-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of CRN-4: implications for domain function in apoptotic DNA degradation Mol.Cell.Biol., 29, 2009
3CM6	Crystal structure of cell-death related nuclease 4 (CRN-4) bound with Er Descriptor: Cell death-related nuclease 4, ERBIUM (III) ION, ZINC ION Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2008-03-21 Release date: 2008-12-30 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of CRN-4: implications for domain function in apoptotic DNA degradation Mol.Cell.Biol., 29, 2009
3CM5	Crystal structure of Cell-Death Related Nuclease 4 (CRN-4) bound with Mn Descriptor: Cell death-related nuclease 4, MANGANESE (II) ION, ZINC ION Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2008-03-21 Release date: 2008-12-30 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.81 Å) Cite: Crystal structure of CRN-4: implications for domain function in apoptotic DNA degradation Mol.Cell.Biol., 29, 2009
2IGI	Crystal Structure of E. coli Oligoribonuclease Descriptor: ACETIC ACID, CADMIUM ION, Oligoribonuclease, ... Authors: Zuo, Y, Malhotra, A. Deposit date: 2006-09-22 Release date: 2007-10-02 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal Structure of Oligoribonuclease, the lone essential exoribonuclease in Escherichia coli To be Published
2IS3	Crystal Structure of Escherichia coli RNase T Descriptor: Ribonuclease T, SULFATE ION Authors: Zuo, Y, Wang, Y, Malhotra, A. Deposit date: 2006-10-16 Release date: 2007-04-24 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Crystal Structure of RNase T, an Exoribonuclease Involved in tRNA Maturation and End Turnover. Structure, 15, 2007
3V9W	Crystal structure of RNase T in complex with a preferred ssDNA (TTA) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*GP*CP*TP*TP*A)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.702 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9Z	Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*CP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9S	Crystal structure of RNase T in complex with a product ssDNA (AAC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9U	Crystal structure of RNase T in complex with a preferred ssDNA (AAT) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*T)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.298 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3VA3	Crystal structure of RNase T in complex with a duplex DNA product (stem loop DNA with 2 nucleotide 3' overhang) Descriptor: COBALT (II) ION, DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.714 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9X	Crystal structure of RNase T in complex with a preferred ssDNA (AAA) with two Mg in the active site Descriptor: DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3'), MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3VA0	Crystal structure of RNase T in complex with a di-nucleotide product (GG) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*GP*G)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.201 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
7V5H	VcOrn native structure with N terminal tag Descriptor: Oligoribonuclease Authors: Zhang, J, Zhang, Q, Bartlam, M. Deposit date: 2021-08-17 Release date: 2021-12-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of oligoribonuclease from Vibrio cholerae O1 El Tor with bound peptide. Acta Crystallogr.,Sect.F, 77, 2021
7VA6	PaOrn Oligoribonuclease D11A mutant with RNA GU complex structure Descriptor: IMIDAZOLE, Oligoribonuclease, RNA (5'-R(P*GP*U)-3') Authors: Zhang, J, Zhang, Q, Bartlam, M. Deposit date: 2021-08-27 Release date: 2022-09-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.1 Å) Cite: PaOrn Oligoribonuclease D11A mutant with RNA GU complex structure To Be Published
7VA2	PaOrn Oligoribonuclease D11A mutant with product GMP complex structure Descriptor: GUANOSINE-5'-MONOPHOSPHATE, IMIDAZOLE, Oligoribonuclease, ... Authors: Zhang, J, Zhang, Q, Bartlam, M. Deposit date: 2021-08-27 Release date: 2022-09-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.3 Å) Cite: PaOrn Oligoribonuclease D11A mutant with product GMP complex structure To Be Published

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