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8XCY	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (2.91 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase To Be Published
8XCX	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase To Be Published
8XCW	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH and AKG in the steady stage of reaction Descriptor: 2-OXOGLUTARIC ACID, Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase To Be Published
8XCV	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP in the steady stage of reaction Descriptor: Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase To Be Published
8XCU	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH, AKG and GLU in the steady stage of reaction Descriptor: 2-OXOGLUTARIC ACID, GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, ... Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase To Be Published
8XCT	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH in the steady stage of reaction Descriptor: Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase To Be Published
8XCS	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADPH, AKG and NH4 in the initial stage of reaction Descriptor: 2-OXOGLUTARIC ACID, AMMONIUM ION, Glutamate dehydrogenase, ... Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (2.63 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase To Be Published
8XCR	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADP and GLU in the initial stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase To Be Published
8XCQ	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the initial stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase To Be Published
8XCP	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the initial stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase To Be Published
8XCO	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH in the initial stage of reaction Descriptor: Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase To Be Published
8XCK	Closed state of central tail fiber of bacteriophage lambda Descriptor: Peptidyl-prolyl cis-trans isomerase A, Tip attachment protein J Authors: Ge, X.F, Wang, J.W. Deposit date: 2023-12-09 Release date: 2024-05-01 Method: ELECTRON MICROSCOPY (2.75 Å) Cite: Cryo-EM structure of lambda tail with LamB To Be Published
8XCJ	Open State of central tail fiber of bacteriophage lambda upon binding to LamB (gpJ713-LamB complex) Descriptor: Maltoporin, Tip attachment protein J Authors: Ge, X.F, Wang, J.W. Deposit date: 2023-12-09 Release date: 2024-05-01 Method: ELECTRON MICROSCOPY (2.98 Å) Cite: Cryo-EM structure of lambda tail with LamB To Be Published
8XCI	Open state of central tail fiber of bacteriophage lambda upon binding to LamB Descriptor: Tip attachment protein J Authors: Ge, X.F, Wang, J.W. Deposit date: 2023-12-09 Release date: 2024-05-01 Method: ELECTRON MICROSCOPY (3.57 Å) Cite: Cryo-EM structure of lambda tail with LamB To Be Published
8XCG	Tail tip complex of bacteriophage lambda in the open state Descriptor: IRON/SULFUR CLUSTER, Tail tip assembly protein I, Tail tip protein L, ... Authors: Ge, X.F, Wang, J.W. Deposit date: 2023-12-09 Release date: 2024-05-01 Method: ELECTRON MICROSCOPY (3.46 Å) Cite: Cryo-EM structure of lambda tail with LamB To Be Published
8XC6	Crystal structure of large stokes shift red fluorescent protein tKeima Descriptor: fluorescent protein Authors: Nam, K.H. Deposit date: 2023-12-08 Release date: 2024-04-17 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structure of large stokes shift red fluorescent protein tKeima To Be Published
8XC4	Nipah virus attachment glycoprotein head domain in complex with a broadly neutralizing antibody 1E5 Descriptor: 1E5-VH, 1E5-VL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Fan, P.F, Yu, C.M, Chen, W. Deposit date: 2023-12-08 Release date: 2024-01-24 Method: X-RAY DIFFRACTION (3.24 Å) Cite: Nipah virus attachment glycoprotein head domain in complex with a broadly neutralizing antibody 1E5 To Be Published
8XBY	The cryo-EM structure of the RAD51 L1 and L2 loops bound to the linker DNA with the blunt end of the nucleosome Descriptor: DNA (5'-D(P*AP*AP*CP*GP*AP*AP*AP*AP*CP*GP*GP*CP*CP*AP*CP*CP*AP*CP*G)-3'), DNA (5'-D(P*CP*GP*TP*GP*GP*TP*GP*GP*CP*CP*GP*TP*TP*TP*TP*CP*GP*TP*T)-3'), DNA repair protein RAD51 homolog 1 Authors: Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H. Deposit date: 2023-12-07 Release date: 2024-03-27 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (7.8 Å) Cite: Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site Nature, 628, 2024
8XBX	The cryo-EM structure of the RAD51 L2 loop bound to the linker DNA with the blunt end of the nucleosome Descriptor: DNA (5'-D(P*AP*AP*CP*GP*AP*AP*AP*AP*CP*GP*GP*CP*CP*AP*CP*CP*AP*CP*G)-3'), DNA (5'-D(P*CP*GP*TP*GP*GP*TP*GP*GP*CP*CP*GP*TP*TP*TP*TP*CP*GP*TP*T)-3'), DNA repair protein RAD51 homolog 1 Authors: Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H. Deposit date: 2023-12-07 Release date: 2024-03-27 Last modified: 2024-04-17 Method: ELECTRON MICROSCOPY (4.36 Å) Cite: Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site. Nature, 628, 2024
8XBW	The cryo-EM structure of the RAD51 N-terminal lobe domain bound to the histone H4 tail of the nucleosome Descriptor: DNA (5'-D(P*AP*CP*CP*GP*CP*TP*TP*AP*AP*AP*CP*GP*CP*AP*CP*GP*TP*A)-3'), DNA (5'-D(P*TP*AP*CP*GP*TP*GP*CP*GP*TP*TP*TP*AP*AP*GP*CP*GP*GP*T)-3'), DNA repair protein RAD51 homolog 1, ... Authors: Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H. Deposit date: 2023-12-07 Release date: 2024-03-27 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.89 Å) Cite: Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site Nature, 628, 2024
8XBV	The cryo-EM structure of the RAD51 L1 and L2 loops bound to the linker DNA with the sticky end of the nucleosome Descriptor: DNA (5'-D(P*CP*GP*AP*AP*AP*AP*CP*GP*GP*CP*CP*AP*CP*CP*A)-3'), DNA (5'-D(P*TP*GP*GP*CP*CP*GP*TP*TP*TP*TP*CP*G)-3'), DNA repair protein RAD51 homolog 1 Authors: Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H. Deposit date: 2023-12-07 Release date: 2024-03-27 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (7.61 Å) Cite: Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site Nature, 628, 2024
8XBU	The cryo-EM structure of the decameric RAD51 ring bound to the nucleosome with the linker DNA binding Descriptor: DNA (153-MER), DNA (156-MER), DNA repair protein RAD51 homolog 1, ... Authors: Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H. Deposit date: 2023-12-07 Release date: 2024-03-27 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (4.24 Å) Cite: Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site Nature, 628, 2024
8XBT	The cryo-EM structure of the octameric RAD51 ring bound to the nucleosome with the linker DNA binding Descriptor: DNA (153-MER), DNA (156-MER), DNA repair protein RAD51 homolog 1, ... Authors: Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H. Deposit date: 2023-12-07 Release date: 2024-03-27 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (4.12 Å) Cite: Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site Nature, 628, 2024
8XBI	Human GPR34 -Gi complex bound to M1, receptor focused Descriptor: (2~{S})-2-azanyl-3-[[(2~{R})-1-ethoxy-3-[3-[2-[(3-phenoxyphenyl)methoxy]phenyl]propanoyloxy]propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-propanoic acid, Probable G-protein coupled receptor 34 Authors: Kawahara, R, Shihoya, W, Nureki, O. Deposit date: 2023-12-06 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (3.06 Å) Cite: Cryo-EM structure of the Human GPR34-Gi complex bound to S3E-LysoPS To Be Published
8XBH	Human GPR34 -Gi complex bound to M1 Descriptor: (2~{S})-2-azanyl-3-[[(2~{R})-1-ethoxy-3-[3-[2-[(3-phenoxyphenyl)methoxy]phenyl]propanoyloxy]propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-propanoic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ... Authors: Kawahara, R, Shihoya, W, Nureki, O. Deposit date: 2023-12-06 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: Cryo-EM structure of the Human GPR34-Gi complex bound to S3E-LysoPS To Be Published

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