PDB: 98 resultsInfo pagesStatus searchChemie searchBIRD

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4LIJ	Crystal structure of a far upstream element (FUSE) binding protein 1 (FUBP1) from Homo sapiens at 1.95 A resolution Descriptor: Far upstream element-binding protein 1, PHOSPHATE ION Authors: Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology, Partnership for T-Cell Biology (TCELL) Deposit date: 2013-07-02 Release date: 2013-11-27 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of a far upstream element (FUSE) binding protein 1 (FUBP1) from Homo sapiens at 1.95 A resolution To be published
6QEY	IMP1 KH1 and KH2 domains create a structural platform with unique RNA recognition and re-modelling properties Descriptor: ACETONITRILE, Insulin-like growth factor 2 mRNA-binding protein 1, PHOSPHATE ION Authors: Dagil, R, Ball, N.J, Ogrodowicz, R.W, Purkiss, A.G, Taylor, I.A, Ramos, A. Deposit date: 2019-01-09 Release date: 2019-03-27 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (2.2 Å) Cite: IMP1 KH1 and KH2 domains create a structural platform with unique RNA recognition and re-modelling properties. Nucleic Acids Res., 47, 2019
1J4W	COMPLEX OF THE KH3 and KH4 DOMAINS OF FBP WITH A SINGLE_STRANDED 29mer DNA OLIGONUCLEOTIDE FROM THE FUSE ELEMENT OF THE C-MYC ONCOGENE Descriptor: DNA (5'-D(*GP*TP*A*TP*AP*TP*TP*CP*CP*CP*TP*CP*GP*GP*G*AP*TP*TP*TP*TP*TP*TP*AP*TP*TP*TP*TP*GP*T)-3'), FUSE binding protein Authors: Clore, G.M, Braddock, D.T. Deposit date: 2001-11-30 Release date: 2002-03-06 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Structure and dynamics of KH domains from FBP bound to single-stranded DNA. Nature, 415, 2002
1KHM	C-TERMINAL KH DOMAIN OF HNRNP K (KH3) Descriptor: PROTEIN (HNRNP K) Authors: Baber, J, Libutti, D, Levens, D, Tjandra, N. Deposit date: 1999-01-07 Release date: 2000-01-12 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: High precision solution structure of the C-terminal KH domain of heterogeneous nuclear ribonucleoprotein K, a c-myc transcription factor. J.Mol.Biol., 289, 1999
8COO	Solution structure of Zipcode binding protein 1 (ZBP1) KH3(DD)KH4 domains in complex with N6-Methyladenosine containing RNA Descriptor: Insulin-like growth factor 2 mRNA-binding protein 1, RNA_(5'-R(*(UP*CP*GP*GP*(6MZ)P*CP*U)-3') Authors: Nicastro, G, Abis, G, Taylor, I.A, Ramos, A. Deposit date: 2023-02-28 Release date: 2024-02-07 Method: SOLUTION NMR Cite: Direct m6A recognition by IMP1 underlays an alternative model of target selection for non-canonical methyl-readers. Nucleic Acids Res., 51, 2023
6GQE	X-ray structure of KH1-2 domain of IMP3 Descriptor: Insulin-like growth factor 2 mRNA-binding protein 3 Authors: Janowski, R, Schlundt, A, Sattler, M, Niessing, D. Deposit date: 2018-06-07 Release date: 2019-04-24 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Combinatorial recognition of clustered RNA elements by the multidomain RNA-binding protein IMP3. Nat Commun, 10, 2019
4B8T	RNA BINDING PROTEIN Solution structure of the third KH domain of KSRP in complex with the G-rich target sequence. Descriptor: 5'-R(*AP*GP*GP*GP*UP)-3', KH-TYPE SPLICING REGULATORY PROTEIN Authors: Nicastro, G, Garcia-Mayoral, M.F, Hollingworth, D, Kelly, G, Martin, S.R, Briata, P, Gherzi, R, Ramos, A. Deposit date: 2012-08-30 Release date: 2012-11-07 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Noncanonical G Recognition Mediates Ksrp Regulation of Let-7 Biogenesis Nat.Struct.Mol.Biol., 19, 2012
7VKL	Crystal structure of MmIMP3-KH12 in complex with zipcode RNA Descriptor: Insulin-like growth factor 2 mRNA-binding protein 3, RNA (8-mer) Authors: Li, X.J, Wu, B.X. Deposit date: 2021-09-30 Release date: 2022-10-05 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal structure of MmIMP3-KH12 in complex with zipcode RNA To Be Published
3KRM	Imp1 kh34 Descriptor: GLYCEROL, Insulin-like growth factor 2 mRNA-binding protein 1 Authors: Chao, J.A, Singer, R.H, Almo, S.C, Patskovsky, Y. Deposit date: 2009-11-18 Release date: 2010-02-09 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.75 Å) Cite: ZBP1 recognition of beta-actin zipcode induces RNA looping. Genes Dev., 24, 2010
7CRE	hnRNPK KH3 domain in complex with a ssDNA fragment from the SIRLOIN element Descriptor: Heterogeneous nuclear ribonucleoprotein K, SODIUM ION, ssDNA fragment Authors: Yao, J, Sun, Q. Deposit date: 2020-08-13 Release date: 2021-12-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3 Å) Cite: Nuclear import receptors and hnRNPK mediates nuclear import and stress granule localization of SIRLOIN. Cell.Mol.Life Sci., 78, 2021
1EC6	CRYSTAL STRUCTURE OF NOVA-2 KH3 K-HOMOLOGY RNA-BINDING DOMAIN BOUND TO 20-MER RNA HAIRPIN Descriptor: 20-MER RNA HAIRPIN, RNA-BINDING PROTEIN NOVA-2 Authors: Lewis, H.A, Musunuru, K, Jensen, K.B, Edo, C, Chen, H. Deposit date: 2000-01-25 Release date: 2000-02-21 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Sequence-specific RNA binding by a Nova KH domain: implications for paraneoplastic disease and the fragile X syndrome. Cell(Cambridge,Mass.), 100, 2000
4WAN	Crystal structure of Msl5 protein in complex with RNA at 1.8 A Descriptor: ACETATE ION, Branchpoint-bridging protein, GLYCEROL, ... Authors: Jacewicz, A, Smith, P, Chico, L, Schwer, B, Shuman, S. Deposit date: 2014-08-29 Release date: 2014-12-17 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs. Rna, 21, 2015
4WAL	Crystal structure of selenomethionine Msl5 protein in complex with RNA at 2.2 A Descriptor: Branchpoint-bridging protein, CHLORIDE ION, GLYCEROL, ... Authors: Jacewicz, A, Smith, P, Chico, L, Schwer, B, Shuman, S. Deposit date: 2014-08-29 Release date: 2014-12-17 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs. Rna, 21, 2015
6ROL	Structure of IMP2 KH34 domains Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Insulin-like growth factor 2 mRNA-binding protein 2, ... Authors: Bhaskar, V, Biswas, J, Singer, R.H, Chao, J.A. Deposit date: 2019-05-13 Release date: 2019-10-16 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The structural basis for RNA selectivity by the IMP family of RNA-binding proteins. Nat Commun, 10, 2019
6FBL	NMR Solution Structure of MINA-1(254-334) Descriptor: MINA-1 Authors: Michel, E, Allain, F. Deposit date: 2017-12-19 Release date: 2019-01-30 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: MINA-1 and WAGO-4 are part of regulatory network coordinating germ cell death and RNAi in C. elegans. Cell Death Differ., 26, 2019
1J5K	COMPLEX OF THE KH3 DOMAIN OF HNRNP K WITH A SINGLE_STRANDED 10MER DNA OLIGONUCLEOTIDE Descriptor: 5'-D(*AP*TP*AP*T*TP*CP*CP*CP*TP*C)-3', Heterogeneous nuclear ribonucleoprotein K Authors: Clore, G.M, Braddock, D.T. Deposit date: 2002-05-13 Release date: 2002-07-10 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Molecular basis of sequence-specific single-stranded DNA recognition by KH domains: solution structure of a complex between hnRNP K KH3 and single-stranded DNA. EMBO J., 21, 2002
6Y2D	Crystal structure of the second KH domain of FUBP1 Descriptor: Far upstream element-binding protein 1, GLYCEROL, SULFATE ION Authors: Ni, X, Chaikuad, A, Joerger, A.C, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC) Deposit date: 2020-02-15 Release date: 2020-03-25 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Comparative structural analyses and nucleotide-binding characterization of the four KH domains of FUBP1. Sci Rep, 10, 2020
6Y2C	Crystal structure of the third KH domain of FUBP1 Descriptor: 1,2-ETHANEDIOL, Far upstream element-binding protein 1, ZINC ION Authors: Ni, X, Joerger, A.C, Chaikuad, A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC) Deposit date: 2020-02-15 Release date: 2020-03-25 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2 Å) Cite: Comparative structural analyses and nucleotide-binding characterization of the four KH domains of FUBP1. Sci Rep, 10, 2020
6Y24	Crystal structure of fourth KH domain of FUBP1 Descriptor: 1,2-ETHANEDIOL, Far upstream element-binding protein 1 Authors: Ni, X, Joerger, A.C, Chaikuad, A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC) Deposit date: 2020-02-14 Release date: 2020-03-25 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Comparative structural analyses and nucleotide-binding characterization of the four KH domains of FUBP1. Sci Rep, 10, 2020
3VKE	Contribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides Descriptor: DNA (5'-D(P*AP*CP*CP*CP*CP*A)-3'), Poly(rC)-binding protein 1 Authors: Traore, D.A.K, Wilce, M.C.J, Wilce, J.A. Deposit date: 2011-11-15 Release date: 2012-02-29 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Contribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides Nucleic Acids Res., 40, 2012
1DT4	CRYSTAL STRUCTURE OF NOVA-1 KH3 K-HOMOLOGY RNA-BINDING DOMAIN Descriptor: NEURO-ONCOLOGICAL VENTRAL ANTIGEN 1 Authors: Lewis, H.A, Chen, H, Edo, C, Buckanovich, R.J, Yang, Y.Y.L. Deposit date: 2000-01-11 Release date: 2000-02-11 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structures of Nova-1 and Nova-2 K-homology RNA-binding domains. Structure Fold.Des., 7, 1999
1DTJ	CRYSTAL STRUCTURE OF NOVA-2 KH3 K-HOMOLOGY RNA-BINDING DOMAIN Descriptor: RNA-BINDING NEUROONCOLOGICAL VENTRAL ANTIGEN 2 Authors: Lewis, H.A, Chen, H, Edo, C, Buckanovich, R.J, Yang, Y.Y.L, Musunuru, K, Zhong, R, Darnell, R.B, Burley, S.K. Deposit date: 2000-01-12 Release date: 2000-02-18 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structures of Nova-1 and Nova-2 K-homology RNA-binding domains. Structure Fold.Des., 7, 1999
1VIH	NMR STUDY OF VIGILIN, REPEAT 6, MINIMIZED AVERAGE STRUCTURE Descriptor: VIGILIN Authors: Musco, G, Stier, G, Joseph, C, Morelli, M.A.C, Nilges, M, Gibson, T.J, Pastore, A. Deposit date: 1995-11-29 Release date: 1996-04-03 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Three-dimensional structure and stability of the KH domain: molecular insights into the fragile X syndrome. Cell(Cambridge,Mass.), 85, 1996
1VIG	NMR STUDY OF VIGILIN, REPEAT 6, 40 STRUCTURES Descriptor: VIGILIN Authors: Musco, G, Stier, G, Joseph, C, Morelli, M.A.C, Nilges, M, Gibson, T.J, Pastore, A. Deposit date: 1995-11-29 Release date: 1996-04-03 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Three-dimensional structure and stability of the KH domain: molecular insights into the fragile X syndrome. Cell(Cambridge,Mass.), 85, 1996
1TUA	1.5 A Crystal Structure of a Protein of Unknown Function APE0754 from Aeropyrum pernix Descriptor: Hypothetical protein APE0754 Authors: Zhang, R, Skarina, T, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2004-06-24 Release date: 2004-08-17 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.5 Å) Cite: 1.5A crystal structure of a hypothetical protein APE0754 from Aeropyrum pernix To be Published

 

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