8YY0
 
 | | Vo domain of V/A-ATPase from Thermus thermophilus state2 | | Descriptor: | V-type ATP synthase subunit C, V-type ATP synthase subunit I, V-type ATP synthase, ... | | Authors: | Kishikawa, J, Nishida, Y, Nakano, A, Yokoyama, K. | | Deposit date: | 2024-04-03 | | Release date: | 2024-12-04 | | Last modified: | 2025-06-25 | | Method: | ELECTRON MICROSCOPY (3.6 Å) | | Cite: | Rotary mechanism of the prokaryotic V o motor driven by proton motive force.
Nat Commun, 15, 2024
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8YY1
 | | Vo domain of V/A-ATPase from Thermus thermophilus state3 | | Descriptor: | V-type ATP synthase subunit C, V-type ATP synthase subunit I, V-type ATP synthase, ... | | Authors: | Nishida, Y, Kishikawa, J, Nakano, A, Yokoyama, K. | | Deposit date: | 2024-04-03 | | Release date: | 2024-12-04 | | Last modified: | 2025-06-25 | | Method: | ELECTRON MICROSCOPY (3.6 Å) | | Cite: | Rotary mechanism of the prokaryotic V o motor driven by proton motive force.
Nat Commun, 15, 2024
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3SE0
 | | Structural characterization of the subunit A mutant F508W of the A-ATP synthase from Pyrococcus horikoshii | | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ... | | Authors: | Tadwal, V.S, Manimekalai, M.S.S, Balakrishna, A.M, Gruber, G. | | Deposit date: | 2011-06-09 | | Release date: | 2012-01-25 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.62 Å) | | Cite: | Engineered tryptophan in the adenine-binding pocket of catalytic subunit A of A-ATP synthase demonstrates the importance of aromatic residues in adenine binding, forming a tool for steady-state and time-resolved fluorescence spectroscopy.
Acta Crystallogr.,Sect.F, 67, 2011
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6KOI
 | | Crystal structure of SNX11-PXe domain in dimer form. | | Descriptor: | Sorting nexin-11 | | Authors: | Xu, T, Xu, J, Liu, J. | | Deposit date: | 2019-08-11 | | Release date: | 2020-07-08 | | Last modified: | 2024-11-13 | | Method: | X-RAY DIFFRACTION (3.5 Å) | | Cite: | Molecular Basis for PI(3,5)P2Recognition by SNX11, a Protein Involved in Lysosomal Degradation and Endosome Homeostasis Regulation.
J.Mol.Biol., 432, 2020
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6KOJ
 | | Crystal structure of SNX11-PXe domain in complex with PI(3,5)P2 | | Descriptor: | Sorting nexin-11, [(2~{R})-2-butanoyloxy-3-[oxidanyl-[(2~{R},3~{R},5~{S},6~{R})-2,4,6-tris(oxidanyl)-3,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] butanoate | | Authors: | Xu, T, Liu, J. | | Deposit date: | 2019-08-11 | | Release date: | 2020-07-08 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.14 Å) | | Cite: | Molecular Basis for PI(3,5)P2Recognition by SNX11, a Protein Involved in Lysosomal Degradation and Endosome Homeostasis Regulation.
J.Mol.Biol., 432, 2020
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6KOK
 | | Crystal Structure of SNX11/SNX10-PXe Chimera | | Descriptor: | CHLORIDE ION, SODIUM ION, Sorting nexin-11,Uncharacterized protein SNX10 | | Authors: | Xu, T, Liu, J. | | Deposit date: | 2019-08-11 | | Release date: | 2020-07-08 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Molecular Basis for PI(3,5)P2Recognition by SNX11, a Protein Involved in Lysosomal Degradation and Endosome Homeostasis Regulation.
J.Mol.Biol., 432, 2020
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2KWY
 | | Structure of G61-101 | | Descriptor: | V-type proton ATPase subunit G | | Authors: | Rishikesan, S, Gruber, G. | | Deposit date: | 2010-04-22 | | Release date: | 2011-04-27 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | Structure of G61-101
To be Published
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5LQZ
 | | Structure of F-ATPase from Pichia angusta, state1 | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase OSCP subunit, ... | | Authors: | Vinothkumar, K.R, Montgomery, M.G, Liu, S, Walker, J.E. | | Deposit date: | 2016-08-17 | | Release date: | 2016-11-16 | | Last modified: | 2024-05-15 | | Method: | ELECTRON MICROSCOPY (7 Å) | | Cite: | Structure of the mitochondrial ATP synthase fromPichia angustadetermined by electron cryo-microscopy.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
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4O1S
 | | Crystal structure of TvoVMA intein | | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, SULFATE ION, ... | | Authors: | Aranko, A.S, Oeemig, J.S, Zhou, D, Kajander, T, Wlodawer, A, Iwai, H. | | Deposit date: | 2013-12-16 | | Release date: | 2014-03-19 | | Last modified: | 2023-09-20 | | Method: | X-RAY DIFFRACTION (2.7008 Å) | | Cite: | Structure-based engineering and comparison of novel split inteins for protein ligation.
Mol Biosyst, 10, 2014
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2WIE
 | | High-resolution structure of the rotor ring from a proton dependent ATP synthase | | Descriptor: | ATP SYNTHASE C CHAIN, CYMAL-4 | | Authors: | Pogoryelov, D, Yildiz, O, Faraldo-Gomez, J.D, Meier, T. | | Deposit date: | 2009-05-11 | | Release date: | 2009-09-29 | | Last modified: | 2024-11-20 | | Method: | X-RAY DIFFRACTION (2.13 Å) | | Cite: | High-Resolution Structure of the Rotor Ring of a Proton-Dependent ATP Synthase.
Nat.Struct.Mol.Biol., 16, 2009
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3V6I
 | | Crystal structure of the peripheral stalk of Thermus thermophilus H+-ATPase/synthase at 2.25 A resolution | | Descriptor: | CALCIUM ION, SODIUM ION, V-type ATP synthase subunit E, ... | | Authors: | Stewart, A.G, Lee, L.K, Donohoe, M, Chaston, J.J, Stock, D. | | Deposit date: | 2011-12-19 | | Release date: | 2012-02-22 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2.25 Å) | | Cite: | The dynamic stator stalk of rotary ATPases
Nat Commun, 3, 2012
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8J0T
 | | Cryo-EM structure of Mycobacterium tuberculosis ATP synthase in the apo-form | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... | | Authors: | Zhang, Y, Lai, Y, Liu, F, Rao, Z, Gong, H. | | Deposit date: | 2023-04-11 | | Release date: | 2024-05-22 | | Last modified: | 2025-06-25 | | Method: | ELECTRON MICROSCOPY (2.8 Å) | | Cite: | Inhibition of M. tuberculosis and human ATP synthase by BDQ and TBAJ-587.
Nature, 631, 2024
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8SXR
 | | Crystal structure of SARS-CoV-2 Mpro with C5a | | Descriptor: | 3C-like proteinase nsp5, N-[(4-chlorothiophen-2-yl)methyl]-N-[4-(dimethylamino)phenyl]-2-(5-hydroxyisoquinolin-4-yl)acetamide | | Authors: | Worrall, L.J, Kenward, C, Lee, J, Strynadka, N.C.J. | | Deposit date: | 2023-05-23 | | Release date: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (2.114 Å) | | Cite: | A novel class of broad-spectrum active-site-directed 3C-like protease inhibitors with nanomolar antiviral activity against highly immune-evasive SARS-CoV-2 Omicron subvariants.
Emerg Microbes Infect, 12, 2023
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6F36
 | | Polytomella Fo model | | Descriptor: | Mitochondrial ATP synthase subunit 6, Mitochondrial ATP synthase subunit ASA6, Mitochondrial ATP synthase subunit c | | Authors: | Yildiz, O, Kuehlbrandt, W, Klusch, N, Murphy, B.J, Mills, D.J. | | Deposit date: | 2017-11-28 | | Release date: | 2017-12-20 | | Last modified: | 2025-07-09 | | Method: | ELECTRON MICROSCOPY (3.7 Å) | | Cite: | Structural basis of proton translocation and force generation in mitochondrial ATP synthase.
Elife, 6, 2017
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5NNY
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5BN5
 | | Structural basis for a unique ATP synthase core complex from Nanoarcheaum equitans | | Descriptor: | NEQ263, SULFATE ION, V-type ATP synthase alpha chain | | Authors: | Mohanty, S, Jobichen, C, Chichili, V.P.R, Sivaraman, J. | | Deposit date: | 2015-05-25 | | Release date: | 2015-09-16 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (2.997 Å) | | Cite: | Structural Basis for a Unique ATP Synthase Core Complex from Nanoarcheaum equitans
J.Biol.Chem., 290, 2015
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6NJP
 | | Structure of the assembled ATPase EscN in complex with its central stalk EscO from the enteropathogenic E. coli (EPEC) type III secretion system | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, EscO, ... | | Authors: | Majewski, D.D, Worrall, L.J, Hong, C, Atkinson, C.E, Vuckovic, M, Watanabe, N, Yu, Z, Strynadka, N.C.J. | | Deposit date: | 2019-01-03 | | Release date: | 2019-02-20 | | Last modified: | 2024-03-20 | | Method: | ELECTRON MICROSCOPY (3.29 Å) | | Cite: | Cryo-EM structure of the homohexameric T3SS ATPase-central stalk complex reveals rotary ATPase-like asymmetry.
Nat Commun, 10, 2019
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6NJO
 | | Structure of the assembled ATPase EscN from the enteropathogenic E. coli (EPEC) type III secretion system | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, MAGNESIUM ION, ... | | Authors: | Majewski, D.D, Worrall, L.J, Hong, C, Atkinson, C.E, Vuckovic, M, Watanabe, N, Yu, Z, Strynadka, N.C.J. | | Deposit date: | 2019-01-03 | | Release date: | 2019-02-20 | | Last modified: | 2024-03-20 | | Method: | ELECTRON MICROSCOPY (3.34 Å) | | Cite: | Cryo-EM structure of the homohexameric T3SS ATPase-central stalk complex reveals rotary ATPase-like asymmetry.
Nat Commun, 10, 2019
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6BS9
 | | Stage III sporulation protein AB (SpoIIIAB) | | Descriptor: | SULFATE ION, Stage III sporulation protein AB | | Authors: | Strynadka, N.C.J, Zeytuni, N, Camp, A.H, Flanagan, K.A. | | Deposit date: | 2017-12-01 | | Release date: | 2018-01-17 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.32 Å) | | Cite: | Structural characterization of SpoIIIAB sporulation-essential protein in Bacillus subtilis.
J. Struct. Biol., 202, 2018
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7QSS
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9UWZ
 | | Crystal structure of the type III secretion chaperone VecA from Vibrio parahaemolyticus | | Descriptor: | CesT family type III secretion system chaperone, HEXATANTALUM DODECABROMIDE, PHOSPHATE ION | | Authors: | Iimori, M, Oki, H, Akeda, Y, Ishii, E, Kodama, T, Ueda, T, Nakamura, S, Matsuda, S, Kawahara, K, Iida, T. | | Deposit date: | 2025-05-13 | | Release date: | 2025-06-25 | | Last modified: | 2025-07-02 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Structural basis of effector recognition by the T3SS chaperone VecA from Vibrio parahaemolyticus.
Biochem.Biophys.Res.Commun., 776, 2025
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9UX0
 | | Crystal structure of the virulence effector VepA in complex with its secretion chaperone VecA | | Descriptor: | Cation transporter, CesT family type III secretion system chaperone | | Authors: | Iimori, M, Oki, H, Akeda, Y, Ishii, E, Kodama, T, Ueda, T, Nakamura, S, Matsuda, S, Kawahara, K, Iida, T. | | Deposit date: | 2025-05-13 | | Release date: | 2025-06-25 | | Last modified: | 2025-07-02 | | Method: | X-RAY DIFFRACTION (2.49 Å) | | Cite: | Structural basis of effector recognition by the T3SS chaperone VecA from Vibrio parahaemolyticus.
Biochem.Biophys.Res.Commun., 776, 2025
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6YNY
 | | Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - F1Fo composite dimer model | | Descriptor: | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, ADENOSINE-5'-DIPHOSPHATE, ... | | Authors: | Kock Flygaard, R, Muhleip, A, Amunts, A. | | Deposit date: | 2020-04-14 | | Release date: | 2020-09-30 | | Last modified: | 2025-10-01 | | Method: | ELECTRON MICROSCOPY (2.7 Å) | | Cite: | Type III ATP synthase is a symmetry-deviated dimer that induces membrane curvature through tetramerization.
Nat Commun, 11, 2020
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4DT0
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6YNW
 | | Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - central stalk/cring | | Descriptor: | subunit c, subunit delta, subunit epsilon, ... | | Authors: | Kock Flygaard, R, Muhleip, A, Amunts, A. | | Deposit date: | 2020-04-14 | | Release date: | 2020-09-30 | | Last modified: | 2024-05-22 | | Method: | ELECTRON MICROSCOPY (3.1 Å) | | Cite: | Type III ATP synthase is a symmetry-deviated dimer that induces membrane curvature through tetramerization.
Nat Commun, 11, 2020
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