PDB: 47011 resultsInfo pagesStatus searchChemie searchBIRD

---

1QPH	CRYSTAL STRUCTURE OF THE A-DNA DODECAMER GACCACGTGGTC Descriptor: 5'-D(P*GP*AP*CP*CP*AP*CP*GP*TP*GP*GP*TP*CP)-3' Authors: Raaijmakers, H, Suck, D, Mayer, C. Deposit date: 1999-05-25 Release date: 1999-05-27 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal Structure Analysis of the A-DNA Dodecamer GACCACGTGGTC To be Published
5GKC	The crystal structure of the CPS-6 H148A/F122A Descriptor: Endonuclease G, mitochondrial Authors: Lin, J.L, Yuan, H.S. Deposit date: 2016-07-04 Release date: 2016-11-23 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.892 Å) Cite: Crystal structure of endonuclease G in complex with DNA reveals how it nonspecifically degrades DNA as a homodimer. Nucleic Acids Res., 44, 2016
6EVU	Adhesin domain of PrgB from Enterococcus faecalis Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, PHOSPHATE ION, PrgB Authors: Schmitt, A, Berntsson, R.P.A. Deposit date: 2017-11-02 Release date: 2018-05-16 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.598 Å) Cite: PrgB promotes aggregation, biofilm formation, and conjugation through DNA binding and compaction. Mol. Microbiol., 109, 2018
2B0D	EcoRV Restriction Endonuclease/GAATTC/Ca2+ Descriptor: 5'-D(*AP*AP*AP*GP*AP*AP*TP*TP*CP*TP*T)-3', CALCIUM ION, Type II restriction enzyme EcoRV Authors: Hiller, D.A, Rodriguez, A.M, Perona, J.J. Deposit date: 2005-09-13 Release date: 2005-09-27 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: Non-cognate Enzyme-DNA Complex: Structural and Kinetic Analysis of EcoRV Endonuclease Bound to the EcoRI Recognition Site GAATTC J.Mol.Biol., 354, 2005
5CR5	X-RAY CRYSTAL STRUCTURE AT 1.61A RESOLUTION OF HUMAN MITOCHONDRIAL BRANCHED CHAIN AMINOTRANSFERASE (BCATM) COMPLEXED WITH A BIPHENYL PYRROLIDINE ETHER COMPOUND AND AN INTERNAL ALDIMINE LINKED PLP COFACTOR. Descriptor: 1,2-ETHANEDIOL, 3-({(3R)-1-[(5-bromothiophen-2-yl)carbonyl]pyrrolidin-3-yl}oxy)-N-methyl-2'-[(methylsulfonyl)amino]biphenyl-4-carboxamide, Branched-chain-amino-acid aminotransferase, ... Authors: Somers, D.O. Deposit date: 2015-07-22 Release date: 2015-08-12 Last modified: 2015-09-02 Method: X-RAY DIFFRACTION (1.61 Å) Cite: Discovery, SAR, and X-ray Binding Mode Study of BCATm Inhibitors from a Novel DNA-Encoded Library. Acs Med.Chem.Lett., 6, 2015
6RY3	Structure of the WUS homeodomain Descriptor: ACETYL GROUP, Protein WUSCHEL, SULFATE ION Authors: Sloan, J.J, Wild, K, Sinning, I. Deposit date: 2019-06-10 Release date: 2020-04-29 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.374 Å) Cite: Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL. Nat Commun, 11, 2020
7WJ0	Solution structure of N-terminal domain (nMazE6) of mycobacterial antitoxin MazE6 from MazEF6 TA system Descriptor: Antitoxin MazE6 Authors: Kumari, K, Sarma, S.P. Deposit date: 2022-01-05 Release date: 2022-10-12 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural and mutational analysis of MazE6-operator DNA complex provide insights into autoregulation of toxin-antitoxin systems. Commun Biol, 5, 2022
7NDY	Di-phosphorylated Barrier-to-Autointegration Factor (BAF) in complex with LEM domain of Emerin Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Barrier-to-autointegration factor, N-terminally processed, ... Authors: Marcelot, A, Le Du, M.H, Hoffmann, G, Zinn-Justin, S. Deposit date: 2021-02-02 Release date: 2021-04-07 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.44 Å) Cite: Di-phosphorylated BAF shows altered structural dynamics and binding to DNA, but interacts with its nuclear envelope partners. Nucleic Acids Res., 49, 2021
4RXJ	crystal structure of WHSC1L1-PWWP2 Descriptor: Histone-lysine N-methyltransferase NSD3, UNKNOWN ATOM OR ION Authors: Qin, S, Tempel, W, Dong, A, Li, Y, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) Deposit date: 2014-12-11 Release date: 2015-01-28 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Histone and DNA binding ability studies of the NSD subfamily of PWWP domains. Biochem.Biophys.Res.Commun., 569, 2021
6DPN	Crystal Structure of Bacillus Halodurans Ribonuclease H1 E188A in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 200 s at 21 C Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), 5'-R(P*CP*G)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.493 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
1RZ9	Crystal Structure of AAV Rep complexed with the Rep-binding sequence Descriptor: 26-MER, Rep protein Authors: Hickman, A.B, Ronning, D.R, Perez, Z.N, Kotin, R.M, Dyda, F. Deposit date: 2003-12-24 Release date: 2004-02-17 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3.1 Å) Cite: The nuclease domain of adeno-associated virus rep coordinates replication initiation using two distinct DNA recognition interfaces. Mol.Cell, 13, 2004
3VDP	Structure and biochemical studies of the recombination mediator protein RecR in RecFOR pathway Descriptor: IMIDAZOLE, Recombination protein recR, ZINC ION Authors: Tang, Q, Yan, X.X, Liang, D.C. Deposit date: 2012-01-05 Release date: 2012-12-19 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.451 Å) Cite: RecOR complex including RecR N-N dimer and RecO monomer displays a high affinity for ssDNA Nucleic Acids Res., 40, 2012
2Z6K	Crystal structure of full-length human RPA14/32 heterodimer Descriptor: Replication protein A 14 kDa subunit, Replication protein A 32 kDa subunit Authors: Deng, X, Habel, J.E, Kabaleeswaran, V, Borgstahl, G.E. Deposit date: 2007-08-03 Release date: 2007-12-04 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure of the Full-length Human RPA14/32 Complex Gives Insights into the Mechanism of DNA Binding and Complex Formation J.Mol.Biol., 374, 2007
3VE5	Structure of recombination mediator protein RecR16-196 deletion mutant Descriptor: IMIDAZOLE, Recombination protein recR, ZINC ION Authors: Tang, Q, Yan, X.X, Liang, D.C. Deposit date: 2012-01-07 Release date: 2012-12-19 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.8 Å) Cite: RecOR complex including RecR N-N dimer and RecO monomer displays a high affinity for ssDNA Nucleic Acids Res., 40, 2012
3JXB	Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C Descriptor: 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*A)-3', 5'-D(*TP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3', Repressor protein C2 Authors: Watkins, D, Koudelka, G.B, Williams, L.D. Deposit date: 2009-09-18 Release date: 2010-01-19 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.67 Å) Cite: Sequence Recognition of DNA by Protein-Induced Conformational Transitions J.Mol.Biol., 396, 2010
3JXD	Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+ Descriptor: 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3', RUBIDIUM ION, Repressor protein C2 Authors: Watkins, D, Koudelka, G.B, Williams, L.D. Deposit date: 2009-09-18 Release date: 2010-01-19 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Sequence Recognition of DNA by Protein-Induced Conformational Transitions. J.Mol.Biol., 396, 2010
4YRV	Crystal structure of Anabaena transcription factor HetR complexed with 21-bp DNA from hetP promoter Descriptor: CALCIUM ION, DNA (5'-D(P*AP*TP*GP*AP*GP*GP*GP*GP*TP*TP*AP*GP*AP*CP*CP*CP*CP*TP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*AP*GP*GP*GP*GP*TP*CP*TP*AP*AP*CP*CP*CP*CP*TP*CP*AP*T)-3'), ... Authors: Hu, H.X, Jiang, Y.L, Zhao, M.X, Zhang, C.C, Chen, Y, Zhou, C.Z. Deposit date: 2015-03-16 Release date: 2015-12-02 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural insights into HetR-PatS interaction involved in cyanobacterial pattern formation Sci Rep, 5, 2015
6JYK	Crystal Structure of C. crescentus free GapR Descriptor: UPF0335 protein CCNA_03428 Authors: Xia, B, Huang, Q. Deposit date: 2019-04-26 Release date: 2020-08-05 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2 Å) Cite: GapR binds DNA through dynamic opening of its tetrameric interface. Nucleic Acids Res., 48, 2020
1ZEZ	ACC Holliday Junction Descriptor: 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3', CALCIUM ION Authors: Hays, F.A, Teegarden, A.T, Jones, Z.J.R, Harms, M, Raup, D, Watson, J, Cavaliere, E, Ho, P.S. Deposit date: 2005-04-19 Release date: 2005-05-10 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2 Å) Cite: How sequence defines structure: a crystallographic map of DNA structure and conformation. Proc.Natl.Acad.Sci.Usa, 102, 2005
6DPI	Crystal Structure of Bacillus Halodurans Ribonuclease H1 K196A in Complex with an RNA/DNA Hybrid: Reaction in 10 mM Mg2+ and 200 mM Rb+ for 40 s at 21 C Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), 5'-R(P*CP*G)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.347 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
4ENM	Crystal structure of S. pombe Atl1 in complex with damaged DNA containing O6-benzylguanine Descriptor: Alkyltransferase-like protein 1, DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3'), DNA (5'-D(*GP*CP*CP*AP*TP*GP*(BZG)P*CP*TP*AP*GP*TP*A)-3') Authors: Tubbs, J.L, Arvai, A.S, Tainer, J.A. Deposit date: 2012-04-13 Release date: 2012-06-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.8402 Å) Cite: Atl1 Regulates Choice between Global Genome and Transcription-Coupled Repair of O(6)-Alkylguanines. Mol.Cell, 47, 2012
3JXC	Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+ Descriptor: 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3', Repressor protein C2, THALLIUM (I) ION Authors: Watkins, D, Koudelka, G.B, Williams, L.D. Deposit date: 2009-09-18 Release date: 2010-01-19 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Sequence Recognition of DNA by Protein-Induced Conformational Transitions. J.Mol.Biol., 396, 2010
5O6F	NMR structure of cold shock protein A from Corynebacterium pseudotuberculosis Descriptor: Cold-shock protein Authors: Caruso, I.P, Panwalkar, V, Coronado, M.A, Dingley, A.J, Cornelio, M.L, Willbold, D, Arni, R.K, Eberle, R.J. Deposit date: 2017-06-06 Release date: 2017-07-19 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Structure and interaction of Corynebacterium pseudotuberculosis cold shock protein A with Y-box single-stranded DNA fragment. FEBS J., 285, 2018
4ENK	Crystal structure of S. pombe Atl1 in complex with damaged DNA containing O6-propylguanine Descriptor: Alkyltransferase-like protein 1, DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3'), DNA (5'-D(*GP*CP*CP*AP*TP*GP*(6PO)P*CP*TP*AP*GP*TP*A)-3') Authors: Tubbs, J.L, Arvai, A.S, Tainer, J.A. Deposit date: 2012-04-13 Release date: 2012-06-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.0445 Å) Cite: Atl1 Regulates Choice between Global Genome and Transcription-Coupled Repair of O(6)-Alkylguanines. Mol.Cell, 47, 2012
3VDU	Structure of recombination mediator protein RecRK21G mutant Descriptor: Recombination protein recR, ZINC ION Authors: Tang, Q, Yan, X.X, Liang, D.C. Deposit date: 2012-01-06 Release date: 2012-12-19 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.8 Å) Cite: RecOR complex including RecR N-N dimer and RecO monomer displays a high affinity for ssDNA Nucleic Acids Res., 40, 2012

<434435436437438439440441442443444445446447448449>