PDB: 5515 resultsInfo pagesStatus searchChemie searchBIRD

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6TQF	The structure of ABC transporter Rv1819c in AMP-PNP bound state Descriptor: ABC transporter ATP-binding protein/permease, DODECYL-BETA-D-MALTOSIDE, MAGNESIUM ION, ... Authors: Rempel, S, Gati, C, Slotboom, D.J, Guskov, A. Deposit date: 2019-12-16 Release date: 2020-04-01 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: A mycobacterial ABC transporter mediates the uptake of hydrophilic compounds. Nature, 580, 2020
6TQE	The structure of ABC transporter Rv1819c without addition of substrate Descriptor: ABC transporter ATP-binding protein/permease, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION Authors: Rempel, S, Gati, C, Slotboom, D.J, Guskov, A. Deposit date: 2019-12-16 Release date: 2020-04-01 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: A mycobacterial ABC transporter mediates the uptake of hydrophilic compounds. Nature, 580, 2020
2Y7F	Crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme (Kce) from C. Cloacamonas acidaminovorans in complex with the substrate 3- keto-5-aminohexanoate Descriptor: (5S)-5-AMINO-3-OXO-HEXANOIC ACID, 3-KETO-5-AMINOHEXANOATE CLEAVAGE ENZYME, MAGNESIUM ION, ... Authors: Bellinzoni, M, Alzari, P.M. Deposit date: 2011-01-31 Release date: 2011-06-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.75 Å) Cite: 3-Keto-5-Aminohexanoate Cleavage Enzyme: A Common Fold for an Uncommon Claisen-Type Condensation. J.Biol.Chem., 286, 2011
2Y7E	Crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme (Kce) from Candidatus Cloacamonas acidaminovorans (tetragonal form) Descriptor: 3-KETO-5-AMINOHEXANOATE CLEAVAGE ENZYME, FORMIC ACID, MAGNESIUM ION, ... Authors: Bellinzoni, M, Alzari, P.M. Deposit date: 2011-01-31 Release date: 2011-06-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.28 Å) Cite: 3-Keto-5-Aminohexanoate Cleavage Enzyme: A Common Fold for an Uncommon Claisen-Type Condensation. J.Biol.Chem., 286, 2011
2Y7D	Crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme (Kce) from Candidatus Cloacamonas acidaminovorans (orthorombic form) Descriptor: 3-KETO-5-AMINOHEXANOATE CLEAVAGE ENZYME, GLYCEROL, ZINC ION Authors: Bellinzoni, M, Alzari, P.M. Deposit date: 2011-01-31 Release date: 2011-06-01 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.59 Å) Cite: 3-Keto-5-Aminohexanoate Cleavage Enzyme: A Common Fold for an Uncommon Claisen-Type Condensation. J.Biol.Chem., 286, 2011
2Y7G	Crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme (Kce) from C. Cloacamonas acidaminovorans in complex with the product acetoacetate Descriptor: 3-KETO-5-AMINOHEXANOATE CLEAVAGE ENZYME, ACETOACETIC ACID, GLYCEROL, ... Authors: Bellinzoni, M, Alzari, P.M. Deposit date: 2011-01-31 Release date: 2011-06-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.4 Å) Cite: 3-Keto-5-Aminohexanoate Cleavage Enzyme: A Common Fold for an Uncommon Claisen-Type Condensation. J.Biol.Chem., 286, 2011
2P11	CRYSTAL STRUCTURE OF A PUTATIVE HALOACID DEHALOGENASE-LIKE HYDROLASE (BXE_B1342) FROM BURKHOLDERIA XENOVORANS LB400 AT 2.20 A RESOLUTION Descriptor: CHLORIDE ION, GLYCEROL, Hypothetical protein Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2007-03-01 Release date: 2007-03-20 Last modified: 2023-01-25 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of hypothetical protein (YP_553970.1) from Burkholderia xenovorans LB400 at 2.20 A resolution To be published
2Q0T	Crystal structure of a putative gamma-carboxymuconolactone decarboxylase subunit (bxe_b0980) from burkholderia xenovorans lb400 at 1.70 A resolution Descriptor: Putative gamma-carboxymuconolactone decarboxylase subunit Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2007-05-22 Release date: 2007-06-12 Last modified: 2023-01-25 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of putative gamma-carboxymuconolactone decarboxylase subunit (YP_554324.1) from Burkholderia xenovorans LB400 at 1.70 A resolution To be published
3FGY	CRYSTAL STRUCTURE OF A NTF2-LIKE PROTEIN (BXE_B1094) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.59 A RESOLUTION Descriptor: DI(HYDROXYETHYL)ETHER, UNKNOWN LIGAND, uncharacterized NTF2-like protein Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2008-12-08 Release date: 2008-12-23 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Crystal structure of NTF2-like protein of unknown function. (YP_554211.1) from BURKHOLDERIA XENOVORANS LB400 at 1.59 A resolution To be published
6DHH	RT XFEL structure of Photosystem II 400 microseconds after the second illumination at 2.2 Angstrom resolution Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Kern, J, Chatterjee, R, Young, I.D, Fuller, F.D, Lassalle, L, Ibrahim, M, Gul, S, Fransson, T, Brewster, A.S, Alonso-Mori, R, Hussein, R, Zhang, M, Douthit, L, de Lichtenberg, C, Cheah, M.H, Shevela, D, Wersig, J, Seufert, I, Sokaras, D, Pastor, E, Weninger, C, Kroll, T, Sierra, R.G, Aller, P, Butryn, A, Orville, A.M, Liang, M, Batyuk, A, Koglin, J.E, Carbajo, S, Boutet, S, Moriarty, N.W, Holton, J.M, Dobbek, H, Adams, P.D, Bergmann, U, Sauter, N.K, Zouni, A, Messinger, J, Yano, J, Yachandra, V.K. Deposit date: 2018-05-20 Release date: 2018-11-21 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structures of the intermediates of Kok's photosynthetic water oxidation clock. Nature, 563, 2018
6DHO	RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.07 Angstrom resolution Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Kern, J, Chatterjee, R, Young, I.D, Fuller, F.D, Lassalle, L, Ibrahim, M, Gul, S, Fransson, T, Brewster, A.S, Alonso-Mori, R, Hussein, R, Zhang, M, Douthit, L, de Lichtenberg, C, Cheah, M.H, Shevela, D, Wersig, J, Seufert, I, Sokaras, D, Pastor, E, Weninger, C, Kroll, T, Sierra, R.G, Aller, P, Butryn, A, Orville, A.M, Liang, M, Batyuk, A, Koglin, J.E, Carbajo, S, Boutet, S, Moriarty, N.W, Holton, J.M, Dobbek, H, Adams, P.D, Bergmann, U, Sauter, N.K, Zouni, A, Messinger, J, Yano, J, Yachandra, V.K. Deposit date: 2018-05-20 Release date: 2018-11-21 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.07 Å) Cite: Structures of the intermediates of Kok's photosynthetic water oxidation clock. Nature, 563, 2018
6DHE	RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.05 Angstrom resolution Descriptor: (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... Authors: Kern, J, Chatterjee, R, Young, I.D, Fuller, F.D, Lassalle, L, Ibrahim, M, Gul, S, Fransson, T, Brewster, A.S, Alonso-Mori, R, Hussein, R, Zhang, M, Douthit, L, de Lichtenberg, C, Cheah, M.H, Shevela, D, Wersig, J, Seufert, I, Sokaras, D, Pastor, E, Weninger, C, Kroll, T, Sierra, R.G, Aller, P, Butryn, A, Orville, A.M, Liang, M, Batyuk, A, Koglin, J.E, Carbajo, S, Boutet, S, Moriarty, N.W, Holton, J.M, Dobbek, H, Adams, P.D, Bergmann, U, Sauter, N.K, Zouni, A, Messinger, J, Yano, J, Yachandra, V.K. Deposit date: 2018-05-20 Release date: 2018-11-21 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structures of the intermediates of Kok's photosynthetic water oxidation clock. Nature, 563, 2018
6DHG	RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.5 Angstrom resolution Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Kern, J, Chatterjee, R, Young, I.D, Fuller, F.D, Lassalle, L, Ibrahim, M, Gul, S, Fransson, T, Brewster, A.S, Alonso-Mori, R, Hussein, R, Zhang, M, Douthit, L, de Lichtenberg, C, Cheah, M.H, Shevela, D, Wersig, J, Seufert, I, Sokaras, D, Pastor, E, Weninger, C, Kroll, T, Sierra, R.G, Aller, P, Butryn, A, Orville, A.M, Liang, M, Batyuk, A, Koglin, J.E, Carbajo, S, Boutet, S, Moriarty, N.W, Holton, J.M, Dobbek, H, Adams, P.D, Bergmann, U, Sauter, N.K, Zouni, A, Messinger, J, Yano, J, Yachandra, V.K. Deposit date: 2018-05-20 Release date: 2018-11-21 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structures of the intermediates of Kok's photosynthetic water oxidation clock. Nature, 563, 2018
6DHF	RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.08 Angstrom resolution Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Kern, J, Chatterjee, R, Young, I.D, Fuller, F.D, Lassalle, L, Ibrahim, M, Gul, S, Fransson, T, Brewster, A.S, Alonso-Mori, R, Hussein, R, Zhang, M, Douthit, L, de Lichtenberg, C, Cheah, M.H, Shevela, D, Wersig, J, Seufert, I, Sokaras, D, Pastor, E, Weninger, C, Kroll, T, Sierra, R.G, Aller, P, Butryn, A, Orville, A.M, Liang, M, Batyuk, A, Koglin, J.E, Carbajo, S, Boutet, S, Moriarty, N.W, Holton, J.M, Dobbek, H, Adams, P.D, Bergmann, U, Sauter, N.K, Zouni, A, Messinger, J, Yano, J, Yachandra, V.K. Deposit date: 2018-05-20 Release date: 2018-11-21 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.08 Å) Cite: Structures of the intermediates of Kok's photosynthetic water oxidation clock. Nature, 563, 2018
6DHP	RT XFEL structure of the three-flash state of Photosystem II (3F, S0-rich) at 2.04 Angstrom resolution Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Kern, J, Chatterjee, R, Young, I.D, Fuller, F.D, Lassalle, L, Ibrahim, M, Gul, S, Fransson, T, Brewster, A.S, Alonso-Mori, R, Hussein, R, Zhang, M, Douthit, L, de Lichtenberg, C, Cheah, M.H, Shevela, D, Wersig, J, Seufert, I, Sokaras, D, Pastor, E, Weninger, C, Kroll, T, Sierra, R.G, Aller, P, Butryn, A, Orville, A.M, Liang, M, Batyuk, A, Koglin, J.E, Carbajo, S, Boutet, S, Moriarty, N.W, Holton, J.M, Dobbek, H, Adams, P.D, Bergmann, U, Sauter, N.K, Zouni, A, Messinger, J, Yano, J, Yachandra, V.K. Deposit date: 2018-05-20 Release date: 2018-11-21 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Structures of the intermediates of Kok's photosynthetic water oxidation clock. Nature, 563, 2018
3N0W	Crystal structure of a branched chain amino acid ABC transporter periplasmic ligand-binding protein (Bxe_C0949) from BURKHOLDERIA XENOVORANS LB400 at 1.88 A resolution Descriptor: ABC branched chain amino acid family transporter, periplasmic ligand binding protein, NICKEL (II) ION Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2010-05-14 Release date: 2010-06-02 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.88 Å) Cite: Crystal structure of a branched chain amino acid ABC transporter periplasmic ligand-binding protein (Bxe_C0949) from BURKHOLDERIA XENOVORANS LB400 at 1.88 A resolution To be published
3R4I	Crystal structure of a Citrate lyase (Bxe_B2899) from BURKHOLDERIA XENOVORANS LB400 at 2.24 A resolution Descriptor: ACETATE ION, CALCIUM ION, CHLORIDE ION, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2011-03-17 Release date: 2011-04-06 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (2.24 Å) Cite: Crystal structure of a Citrate lyase (Bxe_B2899) from BURKHOLDERIA XENOVORANS LB400 at 2.24 A resolution To be published
2O8Q	CRYSTAL STRUCTURE OF A PROTEIN WITH A CUPIN-LIKE FOLD AND UNKNOWN FUNCTION (BXE_C0505) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.55 A RESOLUTION Descriptor: 1,2-ETHANEDIOL, Hypothetical protein, NICKEL (II) ION Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2006-12-12 Release date: 2006-12-26 Last modified: 2023-01-25 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structure of hypothetical protein (YP_555756.1) from Burkholderia xenovorans LB400 at 1.55 A resolution To be published
3GWQ	Crystal structure of a putative d-serine deaminase (bxe_a4060) from burkholderia xenovorans lb400 at 2.00 A resolution Descriptor: D-serine deaminase, GLYCEROL, SODIUM ION Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2009-04-01 Release date: 2009-04-14 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of D-serine deaminase from Burkholderia xenovorans LB400 (YP_556991.1) from BURKHOLDERIA XENOVORANS LB400 at 2.00 A resolution To be published
3OQP	Crystal structure of a putative isochorismatase (Bxe_A0706) from BURKHOLDERIA XENOVORANS LB400 at 1.22 A resolution Descriptor: CHLORIDE ION, Putative isochorismatase, TETRAETHYLENE GLYCOL Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2010-09-03 Release date: 2010-10-13 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.22 Å) Cite: Crystal structure of a putative isochorismatase (Bxe_A0706) from BURKHOLDERIA XENOVORANS LB400 at 1.22 A resolution To be published
2QEU	Crystal structure of putative carboxymuconolactone decarboxylase (YP_555818.1) from Burkholderia xenovorans LB400 at 1.65 A resolution Descriptor: ACETATE ION, CITRIC ACID, GLYCEROL, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2007-06-26 Release date: 2007-07-17 Last modified: 2023-01-25 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal structure of Putative carboxymuconolactone decarboxylase (YP_555818.1) from Burkholderia xenovorans LB400 at 1.65 A resolution To be published
3E02	Crystal structure of a duf849 family protein (bxe_c0271) from burkholderia xenovorans lb400 at 1.90 A resolution Descriptor: 1,2-ETHANEDIOL, ZINC ION, uncharacterized protein DUF849 Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2008-07-30 Release date: 2008-08-12 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of protein of unknown function (DUF849) (YP_555544.1) from BURKHOLDERIA XENOVORANS LB400 at 1.90 A resolution To be published
2NYH	Crystal structure of putative dioxygenase (YP_555069.1) from Burkholderia Xenovorans LB400 at 1.70 A resolution Descriptor: Putative dioxygenase, SULFATE ION Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2006-11-20 Release date: 2006-12-12 Last modified: 2023-01-25 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of putative Dioxygenase (YP_555069.1) from Burkholderia Xenovorans LB400 at 1.70 A resolution To be published
5TIS	Room temperature XFEL structure of the native, doubly-illuminated photosystem II complex Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Young, I.D, Ibrahim, M, Chatterjee, R, Gul, S, Fuller, F, Koroidov, S, Brewster, A.S, Tran, R, Alonso-Mori, R, Kroll, T, Michels-Clark, T, Laksmono, H, Sierra, R.G, Stan, C.A, Hussein, R, Zhang, M, Douthit, L, Kubin, M, de Lichtenberg, C, Pham, L.V, Nilsson, H, Cheah, M.H, Shevela, D, Saracini, C, Bean, M.A, Seuffert, I, Sokaras, D, Weng, T.-C, Pastor, E, Weninger, C, Fransson, T, Lassalle, L, Braeuer, P, Aller, P, Docker, P.T, Andi, B, Orville, A.M, Glownia, J.M, Nelson, S, Sikorski, M, Zhu, D, Hunter, M.S, Aquila, A, Koglin, J.E, Robinson, J, Liang, M, Boutet, S, Lyubimov, A.Y, Uervirojnangkoorn, M, Moriarty, N.W, Liebschner, D, Afonine, P.V, Watermann, D.G, Evans, G, Wernet, P, Dobbek, H, Weis, W.I, Brunger, A.T, Zwart, P.H, Adams, P.D, Zouni, A, Messinger, J, Bergmann, U, Sauter, N.K, Kern, J, Yachandra, V.K, Yano, J. Deposit date: 2016-10-03 Release date: 2016-11-23 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.25000381 Å) Cite: Structure of photosystem II and substrate binding at room temperature. Nature, 540, 2016
6W1P	RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.26 Angstrom resolution Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Ibrahim, M, Fransson, T, Chatterjee, R, Cheah, M.H, Hussein, R, Lassalle, L, Sutherlin, K.D, Young, I.D, Fuller, F.D, Gul, S, Kim, I.-S, Simon, P.S, de Lichtenberg, C, Chernev, P, Bogacz, I, Pham, C, Orville, A.M, Saichek, N, Northen, T.R, Batyuk, A, Carbajo, S, Alonso-Mori, R, Tono, K, Owada, S, Bhowmick, A, Bolotovski, R, Mendez, D, Moriarty, N.W, Holton, J.M, Dobbek, H, Brewster, A.S, Adams, P.D, Sauter, N.K, Bergmann, U, Zouni, A, Messinger, J, Kern, J, Yachandra, V.K, Yano, J. Deposit date: 2020-03-04 Release date: 2020-05-13 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.26 Å) Cite: Untangling the sequence of events during the S2→ S3transition in photosystem II and implications for the water oxidation mechanism. Proc.Natl.Acad.Sci.USA, 117, 2020

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