PDB: 45522 resultsInfo pagesStatus searchChemie searchBIRD

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3LR4	Periplasmic domain of the risS sensor protein from Burkholderia pseudomallei, barium phased at low pH Descriptor: BARIUM ION, CHLORIDE ION, Sensor protein Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2010-02-10 Release date: 2010-06-16 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural basis for pH sensing by the periplasmic domain of the risS histidine kinase from Burkholderia pseudomallei To be Published
3LSL	Piracetam bound to the ligand binding domain of GluA2 (flop form) Descriptor: 2-(2-oxopyrrolidin-1-yl)acetamide, GLUTAMIC ACID, Glutamate receptor 2, ... Authors: Ahmed, A.H, Oswald, R.E. Deposit date: 2010-02-12 Release date: 2010-03-16 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.122 Å) Cite: Piracetam Defines a New Binding Site for Allosteric Modulators of alpha-Amino-3-hydroxy-5-methyl-4-isoxazole-propionic Acid (AMPA) Receptors. J.Med.Chem., 53, 2010
3VQ4	Fragments bound to HIV-1 integrase Descriptor: (5-phenyl-1,2-oxazol-3-yl)methanol, CADMIUM ION, POL polyprotein, ... Authors: Wielens, J, Chalmers, D.K, Parker, M.W, Scanlon, M.J. Deposit date: 2012-03-20 Release date: 2013-01-30 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification? J Biomol Screen, 18, 2013
3LTJ	Structure of a new family of artificial alpha helicoidal repeat proteins (alpha-Rep) based on thermostable HEAT-like repeats Descriptor: AlphaRep-4 Authors: Urvoas, A, Guellouz, A, Graille, M, van Tilbeurgh, H, Desmadril, M, Minard, P. Deposit date: 2010-02-16 Release date: 2010-10-13 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Design, production and molecular structure of a new family of artificial alpha-helicoidal repeat proteins ( alpha Rep) based on thermostable HEAT-like repeats J.Mol.Biol., 404, 2010
3VKD	Crystal structure of MoeO5 soaked with 3-phosphoglycerate Descriptor: (2R)-3-(phosphonooxy)-2-{[(2Z,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]oxy}propanoic acid, MAGNESIUM ION, MoeO5, ... Authors: Ren, F, Ko, T.-P, Huang, C.-H, Guo, R.-T. Deposit date: 2011-11-12 Release date: 2012-05-09 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Insights into the mechanism of the antibiotic-synthesizing enzyme MoeO5 from crystal structures of different complexes Angew.Chem.Int.Ed.Engl., 51, 2012
3LTU	5-SeMe-dU containing DNA 8mer Descriptor: 5'-D(*GP*(UMS)P*GP*(T5S)P*AP*CP*AP*C)-3' Authors: Sheng, J, Hassan, A.E.A, Zhang, W, Gan, J, Huang, Z. Deposit date: 2010-02-16 Release date: 2010-03-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate Chemistryselect, 8, 2023
3VQW	Crystal structure of the SeMet substituted catalytic domain of pyrrolysyl-tRNA synthetase Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Pyrrolysine--tRNA ligase Authors: Yanagisawa, T, Sumida, T, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2012-04-01 Release date: 2013-01-02 Last modified: 2013-09-04 Method: X-RAY DIFFRACTION (2.4 Å) Cite: A novel crystal form of pyrrolysyl-tRNA synthetase reveals the pre- and post-aminoacyl-tRNA synthesis conformational states of the adenylate and aminoacyl moieties and an asparagine residue in the catalytic site Acta Crystallogr.,Sect.D, 69, 2013
3LS5	Anti-tetrahydrocannabinol Fab Fragment, Free Form Descriptor: Heavy chain of antibody Fab fragment, Light chain of antibody Fab fragment Authors: Niemi, M.H, Rouvinen, J. Deposit date: 2010-02-12 Release date: 2010-06-02 Last modified: 2014-01-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: A structural insight into the molecular recognition of a (-)-Delta9-tetrahydrocannabinol and the development of a sensitive, one-step, homogeneous immunocomplex-based assay for its detection J.Mol.Biol., 400, 2010
3VQ6	HIV-1 IN core domain in complex with (1-methyl-5-phenyl-1H-pyrazol-4-yl)methanol Descriptor: (1-methyl-5-phenyl-1H-pyrazol-4-yl)methanol, CADMIUM ION, POL polyprotein, ... Authors: Wielens, J, Chalmers, D.K, Parker, M.W, Scanlon, M.J. Deposit date: 2012-03-20 Release date: 2013-01-30 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification? J Biomol Screen, 18, 2013
3VQY	Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with BocLys and AMPPNP (form 2) Descriptor: MAGNESIUM ION, N~6~-(tert-butoxycarbonyl)-L-lysine, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Yanagisawa, T, Sumida, T, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2012-04-02 Release date: 2013-01-02 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.4 Å) Cite: A novel crystal form of pyrrolysyl-tRNA synthetase reveals the pre- and post-aminoacyl-tRNA synthesis conformational states of the adenylate and aminoacyl moieties and an asparagine residue in the catalytic site Acta Crystallogr.,Sect.D, 69, 2013
3LY9	Crystal structure of mutant D471N of the periplasmic domain of CadC Descriptor: Transcriptional activator cadC Authors: Eichinger, A, Skerra, A. Deposit date: 2010-02-26 Release date: 2011-02-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of the sensory domain of Escherichia coli CadC, a member of the ToxR-like protein family. Protein Sci., 20, 2011
3LYF	Crystal Structure of the Rift Valley Fever Virus Nucleocapsid Protein Descriptor: GLYCEROL, Nucleocapsid protein Authors: Raymond, D.D, Smith, J.L. Deposit date: 2010-02-26 Release date: 2010-06-30 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Structure of the Rift Valley fever virus nucleocapsid protein reveals another architecture for RNA encapsidation. Proc.Natl.Acad.Sci.USA, 107, 2010
3LRC	Structure of E. coli AdiC (P1) Descriptor: Arginine/agmatine antiporter Authors: Gao, X, Lu, F, Zhou, L, Shi, Y. Deposit date: 2010-02-11 Release date: 2010-02-23 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (4.004 Å) Cite: Structure and mechanism of an amino acid antiporter Science, 324, 2009
3V8W	Crystal Structure of Interleukin-2 Inducible T-cell Kinase Itk Catalytic Domain with Thienopyrazolylindole Inhibitor 469 Descriptor: 3-[2-(5-phenyl-2H-thieno[3,2-c]pyrazol-3-yl)-1H-indol-6-yl]pentan-3-ol, SULFATE ION, Tyrosine-protein kinase ITK/TSK Authors: McLean, L.R, Zhang, Y. Deposit date: 2011-12-23 Release date: 2012-05-02 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.27 Å) Cite: X-ray crystallographic structure-based design of selective thienopyrazole inhibitors for interleukin-2-inducible tyrosine kinase. Bioorg.Med.Chem.Lett., 22, 2012
3LV9	Crystal structure of CBS domain of a putative transporter from Clostridium difficile 630 Descriptor: PHOSPHATE ION, Putative transporter Authors: Nocek, B, Tesar, C, Cobb, G, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2010-02-19 Release date: 2010-03-09 Last modified: 2017-11-08 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structure of CBS domain of a putative transporter from Clostridium difficile 630 To be Published
3LTR	5-OMe-dU containing DNA 8mer Descriptor: 5'-D(*GP*(UMS)P*GP*(T5O)P*AP*CP*AP*C)-3', MAGNESIUM ION Authors: Sheng, J, Hassan, A.E.A, Zhang, W, Gan, J, Huang, Z. Deposit date: 2010-02-16 Release date: 2010-03-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone. Nucleic Acids Res., 40, 2012
3VK5	Crystal structure of MoeO5 in complex with its product FPG Descriptor: (2R)-3-(phosphonooxy)-2-{[(2Z,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]oxy}propanoic acid, MAGNESIUM ION, MoeO5 Authors: Ren, F, Ko, T.-P, Huang, C.-H, Guo, R.-T. Deposit date: 2011-11-08 Release date: 2012-05-09 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.39 Å) Cite: Insights into the mechanism of the antibiotic-synthesizing enzyme MoeO5 from crystal structures of different complexes Angew.Chem.Int.Ed.Engl., 51, 2012
3LYB	Structure of putative endoribonuclease(KP1_3112) from Klebsiella pneumoniae Descriptor: CALCIUM ION, Putative endoribonuclease Authors: Ramagopal, U.A, Toro, R, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) Deposit date: 2010-02-26 Release date: 2010-03-23 Last modified: 2021-02-10 Method: X-RAY DIFFRACTION (2.66 Å) Cite: Structure of putative endoribonuclease(KP1_3112) from Klebsiella pneumoniae To be published
3VQE	HIV-1 IN core domain in complex with [1-(4-fluorophenyl)-5-methyl-1H-pyrazol-4-yl]methanol Descriptor: CADMIUM ION, CHLORIDE ION, POL polyprotein, ... Authors: Wielens, J, Chalmers, D.K, Parker, M.W, Scanlon, M.J. Deposit date: 2012-03-21 Release date: 2013-01-30 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification? J Biomol Screen, 18, 2013
3VQV	Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with AMPPNP (re-refined) Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Pyrrolysine--tRNA ligase Authors: Yanagisawa, T, Sumida, T, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2012-04-01 Release date: 2013-01-02 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: A novel crystal form of pyrrolysyl-tRNA synthetase reveals the pre- and post-aminoacyl-tRNA synthesis conformational states of the adenylate and aminoacyl moieties and an asparagine residue in the catalytic site Acta Crystallogr.,Sect.D, 69, 2013
3VTH	Crystal structure of full-length HypF in the phosphate- and nucleotide-bound form Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, FE (III) ION, GLYCEROL, ... Authors: Shomura, Y, Higuchi, Y. Deposit date: 2012-05-30 Release date: 2012-07-04 Last modified: 2017-11-22 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis for the reaction mechanism of S-carbamoylation of HypE by HypF in the maturation of [NiFe]-hydrogenases J.Biol.Chem., 287, 2012
3VQC	HIV-1 IN core domain in complex with (5-METHYL-3-PHENYL-1,2-OXAZOL-4-YL)METHANOL Descriptor: (5-methyl-3-phenyl-1,2-oxazol-4-yl)methanol, CADMIUM ION, POL polyprotein, ... Authors: Wielens, J, Chalmers, D.K, Parker, M.W, Scanlon, M.J. Deposit date: 2012-03-21 Release date: 2013-01-30 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification? J Biomol Screen, 18, 2013
3LZY	Crystal structure of Endothiapesin in complex with Xenon Descriptor: Endothiapepsin, GLYCEROL, XENON Authors: Behnen, J, Krueger, H, Klebe, G, Heine, A. Deposit date: 2010-03-02 Release date: 2011-05-25 Last modified: 2017-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Old acquantance rediscover: use of xenon/protein complexes as a generic tool for SAD phasing of inhouse data To be Published
3VVR	Crystal structure of MATE in complex with MaD5 Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Putative uncharacterized protein, macrocyclic peptide Authors: Tanaka, Y, Ishitani, R, Nureki, O. Deposit date: 2012-07-27 Release date: 2013-04-03 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis for the drug extrusion mechanism by a MATE multidrug transporter. Nature, 496, 2013
3W07	Atomic resolution structure of orotidine 5'-monophosphate decarboxylase from Methanothermobacter thermoautotrophicus bound with UMP. Descriptor: GLYCEROL, Orotidine 5'-phosphate decarboxylase, URIDINE-5'-MONOPHOSPHATE Authors: Fujihashi, M, Pai, E.F, Miki, K. Deposit date: 2012-10-22 Release date: 2013-02-20 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.03 Å) Cite: Atomic resolution structure of the orotidine 5'-monophosphate decarboxylase product complex combined with surface plasmon resonance analysis: implications for the catalytic mechanism. J.Biol.Chem., 288, 2013

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