PDB: 79322 resultsInfo pagesStatus searchChemie searchBIRD

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3VAF	Structure of U2AF65 variant with BrU3 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA 5'-D(*UP*UP*(BRU)P*(BRU)P*UP*UP*U)-3', GLYCEROL, ... Authors: Jenkins, J.L, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.49 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
7F36	TacT complexed with acetyl-glycyl-tRNAGly Descriptor: ACETYLAMINO-ACETIC ACID, CALCIUM ION, N-acetyltransferase domain-containing protein, ... Authors: Yashiro, Y, Tomita, K. Deposit date: 2021-06-15 Release date: 2021-12-22 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.098 Å) Cite: Molecular basis of glycyl-tRNAGly acetylation by TacT from Salmonella Typhimurium Cell Rep, 37, 2021
4GL2	Structural Basis for dsRNA duplex backbone recognition by MDA5 Descriptor: Interferon-induced helicase C domain-containing protein 1, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, RNA (5'-R(*AP*UP*CP*CP*GP*CP*GP*GP*CP*CP*CP*U)-3'), ... Authors: Wu, B, Hur, S. Deposit date: 2012-08-13 Release date: 2013-01-09 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (3.557 Å) Cite: Structural Basis for dsRNA Recognition, Filament Formation, and Antiviral Signal Activation by MDA5. Cell(Cambridge,Mass.), 152, 2013
4EYA	Crystal Structure of a Plectonemic RNA Supercoil Descriptor: GLYCEROL, N utilization substance protein B homolog, RNA (5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3'), ... Authors: Stagno, J.R, Ji, X. Deposit date: 2012-05-01 Release date: 2012-06-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Crystal structure of a plectonemic RNA supercoil. Nat Commun, 3, 2012
4JLI	Crystal Structure of Escherichia coli Hfq Proximal Pore Mutant Descriptor: Protein hfq Authors: Robinson, K.E, Orans, J. Deposit date: 2013-03-12 Release date: 2013-12-11 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Mapping Hfq-RNA interaction surfaces using tryptophan fluorescence quenching. Nucleic Acids Res., 42, 2014
2LAC	NMR structure of unmodified_ASL_Tyr Descriptor: RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*AP*AP*UP*CP*CP*CP*C)-3') Authors: Denmon, A.P, Wang, J, Nikonowicz, E.P. Deposit date: 2011-03-10 Release date: 2011-08-03 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr). J.Mol.Biol., 412, 2011
2LBQ	NMR structure of i6A37_tyrASL Descriptor: RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*(6IA)P*AP*UP*CP*CP*CP*C)-3') Authors: Denmon, A.P, Wang, J, Nikonowicz, E.P. Deposit date: 2011-04-05 Release date: 2011-08-03 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr). J.Mol.Biol., 412, 2011
2KDQ	Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimic of Tat protein Descriptor: HIV-1 TAR RNA, L-22 CYCLIC PEPTIDE Authors: Davidson, A, Leeper, T.C, Varani, G. Deposit date: 2009-01-14 Release date: 2009-06-23 Last modified: 2024-10-30 Method: SOLUTION NMR Cite: Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimics of Tat protein Proc.Natl.Acad.Sci.USA, 106, 2009
1G70	COMPLEX OF HIV-1 RRE-IIB RNA WITH RSG-1.2 PEPTIDE Descriptor: HIV-1 RRE-IIB 32 NUCLEOTIDE RNA, RSG-1.2 PEPTIDE Authors: Gosser, Y, Hermann, T, Majumdar, A, Hu, W, Frederick, R, Jiang, F, Xu, W, Patel, D.J. Deposit date: 2000-11-08 Release date: 2001-02-07 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Peptide-triggered conformational switch in HIV-1 RRE RNA complexes. Nat.Struct.Biol., 8, 2001
2IL9	Crystal Structure of Plautia Stali Intestine Virus Intergenic Region Internal Ribosome Entry Site Ribosomal Binding Domain RNA at 3.1 Angstroms Descriptor: Ribosomal Binding Domain of the IRES RNA Authors: Pfingsten, J.S, Costantino, D.A, Kieft, J.S. Deposit date: 2006-10-02 Release date: 2007-02-13 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural basis for ribosome recruitment and manipulation by a viral IRES RNA Science, 314, 2006
3SN2	Crystal structure analysis of iron regulatory protein 1 in complex with transferrin receptor IRE B RNA Descriptor: Cytoplasmic aconitate hydratase, transferrin receptor iron regulatory element B RNA Authors: Volz, K, Selezneva, A.I, Walden, W.E. Deposit date: 2011-06-28 Release date: 2011-11-23 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.99 Å) Cite: Accommodating variety in iron-responsive elements: Crystal structure of transferrin receptor 1 B IRE bound to iron regulatory protein 1. Febs Lett., 586, 2012
6WLH	RNA complex of WT1 zinc finger transcription factor Descriptor: RNA (29-MER), Wilms tumor protein, ZINC ION Authors: Wright, P.E, Dyson, H.J. Deposit date: 2020-04-20 Release date: 2021-03-03 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: RNA Binding by the KTS Splice Variants of Wilms' Tumor Suppressor Protein WT1. Biochemistry, 59, 2020
5TEE	Crystal structure of Gemin5 WD40 repeats in apo form Descriptor: GLYCEROL, Gem-associated protein 5, SODIUM ION, ... Authors: Chao, X, Tempel, W, Bian, C, Cerovina, T, He, H, Walker, J.R, Seitova, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) Deposit date: 2016-09-21 Release date: 2016-10-19 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural insights into Gemin5-guided selection of pre-snRNAs for snRNP assembly. Genes Dev., 30, 2016
3CGP	X-ray structure of a pseudouridine-containing yeast spliceosomal U2 snRNA-intron branch site duplex bound to iodide ions Descriptor: IODIDE ION, RNA (5'-R(*CP*GP*CP*UP*AP*CP*UP*AP*AP*CP*GP*CP*G)-3'), RNA (5'-R(*GP*CP*GP*CP*GP*(PSU)P*AP*GP*UP*AP*GP*C)-3'), ... Authors: Lin, Y, Kielkopf, C.L. Deposit date: 2008-03-06 Release date: 2008-07-01 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.57 Å) Cite: X-ray structures of U2 snRNA-branchpoint duplexes containing conserved pseudouridines. Biochemistry, 47, 2008
3CGS	X-ray structure containing the pseudouridylated U2 snRNA and mammalian intron branch site consensus sequences Descriptor: MAGNESIUM ION, RNA (5'-R(*CP*GP*CP*UP*AP*CP*UP*GP*AP*CP*GP*CP*G)-3'), RNA (5'-R(*GP*CP*GP*CP*GP*(PSU)P*AP*GP*UP*AP*GP*C)-3') Authors: Lin, Y, Kielkopf, C.L. Deposit date: 2008-03-06 Release date: 2008-07-01 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.65 Å) Cite: X-ray structures of U2 snRNA-branchpoint duplexes containing conserved pseudouridines. Biochemistry, 47, 2008
3DKP	Human DEAD-box RNA-helicase DDX52, conserved domain I in complex with ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ... Authors: Lehtio, L, Karlberg, T, Andersson, J, Arrowsmith, C.H, Berglund, H, Collins, R, Dahlgren, L.G, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, A, Johansson, I, Kotenyova, T, Moche, M, Nilsson, M.E, Nordlund, P, Nyman, T, Olesen, K, Persson, C, Sagemark, J, Thorsell, A.G, Tresaugues, L, van den Berg, S, Welin, M, Wisniewska, M, Wikstrom, M, Schueler, H, Structural Genomics Consortium (SGC) Deposit date: 2008-06-25 Release date: 2008-08-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Comparative Structural Analysis of Human DEAD-Box RNA Helicases. Plos One, 5, 2010
1S2M	Crystal Structure of the DEAD box protein Dhh1p Descriptor: Putative ATP-dependent RNA helicase DHH1 Authors: Cheng, Z, Song, H. Deposit date: 2004-01-09 Release date: 2005-03-01 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure and functional analysis of DEAD-box protein Dhh1p. Rna, 11, 2005
8QO4	Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes Descriptor: MERS-CoV-SL5 Authors: Moura, T.R, Purta, E, Bernat, A, Baulin, E, Mukherjee, S, Bujnicki, J.M. Deposit date: 2023-09-28 Release date: 2024-03-06 Last modified: 2025-07-02 Method: ELECTRON MICROSCOPY (5.9 Å) Cite: Conserved structures and dynamics in 5'-proximal regions of Betacoronavirus RNA genomes. Nucleic Acids Res., 52, 2024
8QO2	Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes Descriptor: OC43-CoV-SL5 Authors: Moura, T.R, Purta, E, Bernat, A, Baulin, E, Mukherjee, S, Bujnicki, J.M. Deposit date: 2023-09-27 Release date: 2024-03-06 Last modified: 2025-07-09 Method: ELECTRON MICROSCOPY (7.1 Å) Cite: Conserved structures and dynamics in 5'-proximal regions of Betacoronavirus RNA genomes. Nucleic Acids Res., 52, 2024
8QO3	Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes Descriptor: RoBat-CoV-SL5 Authors: Moura, T.R, Purta, E, Bernat, A, Baulin, E, Mukherjee, S, Bujnicki, J.M. Deposit date: 2023-09-28 Release date: 2024-03-06 Last modified: 2025-07-02 Method: ELECTRON MICROSCOPY (6.6 Å) Cite: Conserved structures and dynamics in 5'-proximal regions of Betacoronavirus RNA genomes. Nucleic Acids Res., 52, 2024
8QO5	Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes Descriptor: SARS-CoV-2-SL5 Authors: Moura, T.R, Purta, E, Bernat, A, Baulin, E, Mukherjee, S, Bujnicki, J.M. Deposit date: 2023-09-28 Release date: 2024-03-06 Last modified: 2025-07-02 Method: ELECTRON MICROSCOPY (6.5 Å) Cite: Conserved structures and dynamics in 5'-proximal regions of Betacoronavirus RNA genomes. Nucleic Acids Res., 52, 2024
2BJ6	Crystal Structure of a decameric HNA-RNA hybrid Descriptor: 5'-R(*GP*GP*CP*AP*UP*UP*AP*CP*GP*GP)-3', SULFATE ION, SYNTHETIC HNA Authors: Maier, T, Przylas, I, Straeter, N, Herdewijn, P, Saenger, W. Deposit date: 2005-01-30 Release date: 2005-03-09 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Reinforced Hna Backbone Hydration in the Crystal Structure of a Decameric Hna/RNA Hybrid J.Am.Chem.Soc., 127, 2005
7Q0J	RNA polymerase elongation complex in more-swiveled conformation Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zhu, C, Guo, X, Weixlbaumer, A. Deposit date: 2021-10-15 Release date: 2022-03-23 Last modified: 2025-07-02 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
7Q0K	RNA polymerase elongation complex in less-swiveled conformation Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zhu, C, Guo, X, Weixlbaumer, A. Deposit date: 2021-10-15 Release date: 2022-03-23 Last modified: 2025-07-02 Method: ELECTRON MICROSCOPY (4 Å) Cite: Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
2BE0	Complex Between Paromomycin Derivative JS5-39 and the 16S-Rrna A-Site. Descriptor: (2S,3S,4R,5R,6R)-5-AMINO-2-(AMINOMETHYL)-6-((2R,3R,4R,5S)-5-((1R,2R,3S,5R,6S)-3,5-DIAMINO-2-((2S,3R,4R,5S,6R)-3-AMINO-4 ,5-DIHYDROXY-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-6-HYDROXYCYCLOHEXYLOXY)-2-(HYDROXYMETHYL)-4-(2-((R)-PIPERIDI N-3-YLMETHYLAMINO)ETHOXY)-TETRAHYDROFURAN-3-YLOXY)-TETRAHYDRO-2H-PYRAN-3,4-DIOL, 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' Authors: Francois, B, Westhof, E. Deposit date: 2005-10-21 Release date: 2005-12-20 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.63 Å) Cite: Antibacterial aminoglycosides with a modified mode of binding to the ribosomal-RNA decoding site ANGEW.CHEM.INT.ED.ENGL., 43, 2004

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