PDB: 225399 resultsInfo pagesStatus searchChemie searchBIRD

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5BV1	Crystal Structure of a Vps33-Vps16 Complex from Chaetomium thermophilum Descriptor: D-MALATE, Putative vacuolar protein sorting-associated protein, VPS33 Authors: Baker, R.W, Jeffrey, P.D, Hughson, F.M. Deposit date: 2015-06-04 Release date: 2015-08-12 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.902 Å) Cite: A direct role for the Sec1/Munc18-family protein Vps33 as a template for SNARE assembly. Science, 349, 2015
6JGO	Crystal structure of barley exohydrolaseI W434H mutant in complex with 4I,4III,4V-S-trithiocellohexaose Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1, ... Authors: Luang, S, Streltsov, V.A, Hrmova, M. Deposit date: 2019-02-14 Release date: 2020-08-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.95 Å) Cite: The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun, 13, 2022
4Q7I	Crystal structure of engineered thermostable D-tagatose 3-epimerase PcDTE-Var8 Descriptor: D-tagatose 3-epimerase, GLYCEROL, IMIDAZOLE, ... Authors: Hee, C.S, Bosshart, A, Schirmer, T. Deposit date: 2014-04-25 Release date: 2014-10-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Directed Divergent Evolution of a Thermostable D-Tagatose Epimerase towards Improved Activity for Two Hexose Substrates. Chembiochem, 16, 2015
6BF3	Solution structure of de novo macrocycle design7.3a Descriptor: QDP(DPR)K(2TL)(DAS) Authors: Shortridge, M.D, Hosseinzadeh, P, Pardo-Avila, F, Varani, G, Baker, D. Deposit date: 2017-10-25 Release date: 2018-01-10 Last modified: 2023-11-15 Method: SOLUTION NMR Cite: Comprehensive computational design of ordered peptide macrocycles. Science, 358, 2017
6BE7	Solution structure of de novo macrocycle Design8.1 Descriptor: DDPT(DPR)(DAR)Q(DGN) Authors: Shortridge, M.D, Hosseinzadeh, P, Pardo-Avila, F, Varani, G, Baker, D. Deposit date: 2017-10-24 Release date: 2018-01-03 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Comprehensive computational design of ordered peptide macrocycles. Science, 358, 2017
6BEN	Solution structure of de novo macrocycle design8.2 Descriptor: (DAR)Q(DPR)(DGN)R(DGL)PQ Authors: Shortridge, M.D, Hosseinzadeh, P, Pardo-Avila, F, Varani, G, Baker, B. Deposit date: 2017-10-25 Release date: 2017-12-27 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Comprehensive computational design of ordered peptide macrocycles. Science, 358, 2017
6BF5	Solution structure of de novo macrocycle design7.3a Descriptor: QDP(DPR)K(DTH)(DAS) Authors: Shortridge, M.D, Hosseinzadeh, P, Pardo-Avila, F, Varani, G, Baker, D. Deposit date: 2017-10-25 Release date: 2018-01-10 Last modified: 2023-11-15 Method: SOLUTION NMR Cite: Comprehensive computational design of ordered peptide macrocycles. Science, 358, 2017
6BEO	Solution structure of de novo macrocycle design9.1 Descriptor: (DPR)PY(DHI)PKDL(DGN) Authors: Shortridge, M.D, Hosseinzadeh, P, Pardo-Avila, F, Varani, G, Baker, D. Deposit date: 2017-10-25 Release date: 2017-12-27 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Comprehensive computational design of ordered peptide macrocycles. Science, 358, 2017
6BE9	Solution structure of de novo macrocycle design7.1 Descriptor: T(DLY)NDT(DSG)(DPR) Authors: Shortridge, M.D, Hosseinzadeh, P, Pardo-Avila, F, Varani, G, Baker, B. Deposit date: 2017-10-24 Release date: 2017-12-27 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Comprehensive computational design of ordered peptide macrocycles. Science, 358, 2017
3KO4	Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Plasmodium falciparum in complex with ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, D-tyrosyl-tRNA(Tyr) deacylase Authors: Manickam, Y, Bhatt, T.K, Sharma, A. Deposit date: 2009-11-13 Release date: 2009-12-01 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase J.Biol.Chem., 285, 2010
3KP0	Crystal Structure of ORNITHINE 4,5 AMINOMUTASE in complex with 2,4-diaminobutyrate (DAB) (Aerobic) Descriptor: (2S)-2-amino-4-{[(1Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}butanoic acid, 5'-DEOXYADENOSINE, COBALAMIN, ... Authors: Wolthers, K.R, Levy, C.W, Scrutton, N.S, Leys, D. Deposit date: 2009-11-14 Release date: 2010-01-26 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Large-scale domain dynamics and adenosylcobalamin reorientation orchestrate radical catalysis in ornithine 4,5-aminomutase. J.Biol.Chem., 285, 2010
3KOY	Crystal Structure of ornithine 4,5 aminomutase in complex with ornithine (Aerobic) Descriptor: (E)-N~5~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-ornithine, 5'-DEOXYADENOSINE, COBALAMIN, ... Authors: Wolthers, K.R, Levy, C.W, Scrutton, N.S, Leys, D. Deposit date: 2009-11-14 Release date: 2010-01-26 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Large-scale domain dynamics and adenosylcobalamin reorientation orchestrate radical catalysis in ornithine 4,5-aminomutase. J.Biol.Chem., 285, 2010
6JGB	Crystal structure of barley exohydrolaseI W286F mutant in complex with methyl 6-thio-beta-gentiobioside Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1, ... Authors: Luang, S, Streltsov, V.A, Hrmova, M. Deposit date: 2019-02-13 Release date: 2020-08-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.47 Å) Cite: The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun, 13, 2022
6JGQ	Crystal structure of barley exohydrolaseI W434Y mutant in complex with methyl 2-thio-beta-sophoroside. Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1, GLYCEROL, ... Authors: Luang, S, Streltsov, V.A, Hrmova, M. Deposit date: 2019-02-14 Release date: 2020-08-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.01 Å) Cite: The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun, 13, 2022
6JGE	Crystal structure of barley exohydrolaseI W434A mutant in complex with methyl 2-thio-beta-sophoroside. Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1, GLYCEROL, ... Authors: Luang, S, Streltsov, V.A, Hrmova, M. Deposit date: 2019-02-13 Release date: 2020-08-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.92 Å) Cite: The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun, 13, 2022
5GIW	Solution NMR structure of Humanin containing a D-isomerized serine residue Descriptor: Humanin Authors: Furuita, K, Sugiki, T, Alsanousi, N, Fujiwara, T, Kojima, C. Deposit date: 2016-06-25 Release date: 2016-07-20 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Solution NMR structure and inhibitory effect against amyloid-beta fibrillation of Humanin containing a d-isomerized serine residue Biochem.Biophys.Res.Commun., 477, 2016
7NCC	Crystal structure of fructose-bisphosphate aldolase FBAP from Bacillus methanolicus Descriptor: D-MALATE, IMIDAZOLE, PHOSPHATE ION, ... Authors: Einsle, O, Zhang, L, Guetle, D, Jacquot, J.P. Deposit date: 2021-01-28 Release date: 2021-02-17 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2 Å) Cite: Interrogating the Role of the Two Distinct Fructose-Bisphosphate Aldolases of Bacillus methanolicus by Site-Directed Mutagenesis of Key Amino Acids and Gene Repression by CRISPR Interference Front Microbiol, 12, 2021
3KOW	Crystal Structure of ornithine 4,5 aminomutase backsoaked complex Descriptor: 5'-DEOXYADENOSINE, COBALAMIN, D-ornithine aminomutase E component, ... Authors: Wolthers, K.R, Levy, C.W, Scrutton, N.S, Leys, D. Deposit date: 2009-11-14 Release date: 2010-01-26 Last modified: 2012-10-24 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Large-scale domain dynamics and adenosylcobalamin reorientation orchestrate radical catalysis in ornithine 4,5-aminomutase. J.Biol.Chem., 285, 2010
6K6V	Crystal structure of barley exohydrolaseI W434A mutant in complex with methyl 6-thio-beta-gentiobioside Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1, ... Authors: Luang, S, Streltsov, V.A, Hrmova, M. Deposit date: 2019-06-05 Release date: 2020-08-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.98 Å) Cite: The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun, 13, 2022
3KOX	Crystal Structure of ornithine 4,5 aminomutase in complex with 2,4-diaminobutyrate (Anaerobic) Descriptor: (2S)-2-amino-4-{[(1Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}butanoic acid, 5'-DEOXYADENOSINE, COBALAMIN, ... Authors: Wolthers, K.R, Levy, C.W, Scrutton, N.S, Leys, D. Deposit date: 2009-11-14 Release date: 2010-01-26 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Large-scale domain dynamics and adenosylcobalamin reorientation orchestrate radical catalysis in ornithine 4,5-aminomutase. J.Biol.Chem., 285, 2010
6BUG	Crystal structure of a membrane protein, crystal form I Descriptor: D-alanyl carrier protein, D-alanyl transfer protein DltB Authors: Ma, D, Wang, Z, Xu, W. Deposit date: 2017-12-10 Release date: 2018-10-10 Last modified: 2018-10-24 Method: X-RAY DIFFRACTION (3.27 Å) Cite: Crystal structure of a membrane-bound O-acyltransferase. Nature, 562, 2018
4U04	Structure of a eukaryotic fic domain containing protein Descriptor: Adenosine monophosphate-protein transferase FICD, D(-)-TARTARIC ACID, TETRAETHYLENE GLYCOL Authors: Cole, A.R, Bunney, T.D, Katan, M. Deposit date: 2014-07-11 Release date: 2014-12-10 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.48 Å) Cite: Crystal structure of the human, FIC-domain containing protein HYPE and implications for its functions. Structure, 22, 2014
3KOZ	Crystal Structure of ornithine 4,5 aminomutase in complex with ornithine (Anaerobic) Descriptor: (E)-N~5~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-ornithine, 5'-DEOXYADENOSINE, COBALAMIN, ... Authors: Wolthers, K.R, Levy, C.W, Scrutton, N.S, Leys, D. Deposit date: 2009-11-14 Release date: 2010-01-26 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Large-scale domain dynamics and adenosylcobalamin reorientation orchestrate radical catalysis in ornithine 4,5-aminomutase. J.Biol.Chem., 285, 2010
6JG7	Crystal structure of barley exohydrolaseI W286F in complex with methyl 2-thio-beta-sophoroside Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1, GLYCEROL, ... Authors: Luang, S, Streltsov, V.A, Hrmova, M. Deposit date: 2019-02-13 Release date: 2020-08-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.16 Å) Cite: The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun, 13, 2022
6ABJ	The apo-structure of D-lactate dehydrogenase from Pseudomonas aeruginosa Descriptor: ACETATE ION, D-lactate dehydrogenase (Fermentative) Authors: Furukawa, N, Miyanaga, A, Nakajima, M, Taguchi, H. Deposit date: 2018-07-21 Release date: 2018-09-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Structural Basis of Sequential Allosteric Transitions in Tetrameric d-Lactate Dehydrogenases from Three Gram-Negative Bacteria Biochemistry, 57, 2018

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