PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

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1QNT	X-ray structure of human O6alkylguanine-DNA alkyltransferase Descriptor: METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE Authors: Wibley, J.E.A, Moody, P.C.E. Deposit date: 1999-10-20 Release date: 1999-12-16 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal Structure of the Human O(6)-Alkylguanine-DNA Alkyltransferase. Nucleic Acids Res., 28, 2000
222D	INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA Descriptor: COBALT HEXAMMINE(III), DNA/RNA (5'-R(*GP*CP*)-D(*GP*TP*AP*TP*AP*CP*GP*C)-3') Authors: Gao, Y.-G, Robinson, H, Van Boom, J.H, Wang, A.H.-J. Deposit date: 1995-06-26 Release date: 1996-01-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Influence of counter-ions on the crystal structures of DNA decamers: binding of [Co(NH3)6]3+ and Ba2+ to A-DNA. Biophys.J., 69, 1995
1A9I	APYRIMIDINIC DNA WITH BOUND WATER AT THE DAMAGED SITE, ALPHA FORM, NMR, 1 STRUCTURE Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AABP*AP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*GP*TP*AP*TP*CP*GP*CP*G)-3') Authors: Beger, R.D, Bolton, P.H. Deposit date: 1998-04-06 Release date: 1998-07-15 Last modified: 2024-04-10 Method: SOLUTION NMR Cite: Structures of apurinic and apyrimidinic sites in duplex DNAs. J.Biol.Chem., 273, 1998
1A9J	APYRIMIDINIC DNA WITH BOUND WATER AT THE DAMAGED SITE, BETA FORM, NMR, 1 STRUCTURE Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AABP*AP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*GP*TP*AP*TP*CP*GP*CP*G)-3') Authors: Beger, R.D, Bolton, P.H. Deposit date: 1998-04-06 Release date: 1998-07-15 Last modified: 2024-04-10 Method: SOLUTION NMR Cite: Structures of apurinic and apyrimidinic sites in duplex DNAs. J.Biol.Chem., 273, 1998
206D	BASE-PAIR OPENING AND SPERMINE BINDING-B-DNA FEATURES DISPLAYED IN THE CRYSTAL STRUCTURE OF A GAL OPERON FRAGMENT: IMPLICATIONS FOR PROTEIN-DNA RECOGNITION Descriptor: DNA (5'-D(*CP*CP*AP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*TP*GP*G)-3'), SPERMINE Authors: Tari, L.W, Secco, A.S. Deposit date: 1995-04-19 Release date: 1996-06-21 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Base-pair opening and spermine binding--B-DNA features displayed in the crystal structure of a gal operon fragment: implications for protein-DNA recognition. Nucleic Acids Res., 23, 1995
254D	ALTERNATING AND NON-ALTERNATING DG-DC HEXANUCLEOTIDES CRYSTALLIZE AS CANONICAL A-DNA Descriptor: DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*C)-3') Authors: Mooers, B.H, Schroth, G.P, Baxter, W.W, Ho, P.S. Deposit date: 1995-09-29 Release date: 1996-04-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA. J.Mol.Biol., 249, 1995
1TDZ	Crystal Structure Complex Between the Lactococcus Lactis FPG (Mutm) and a FAPY-dG Containing DNA Descriptor: 5'-D(*CP*TP*CP*TP*TP*TP*(FOX)P*TP*TP*TP*CP*TP*CP*G)-3', 5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3', GLYCEROL, ... Authors: Coste, F, Ober, M, Carell, T, Boiteux, S, Zelwer, C, Castaing, B. Deposit date: 2004-05-24 Release date: 2004-09-07 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis for the recognition of the FapydG lesion (2,6-diamino-4-hydroxy-5-formamidopyrimidine) by formamidopyrimidine-DNA glycosylase J.Biol.Chem., 279, 2004
275D	ALTERNATING AND NON-ALTERNATING DG-DC HEXANUCLEOTIDES CRYSTALLIZE AS CANONICAL A-DNA Descriptor: DNA (5'-D(*GP*(5CM)P*CP*GP*GP*C)-3') Authors: Mooers, B.H, Schroth, G.P, Baxter, W.W, Ho, P.S. Deposit date: 1995-09-29 Release date: 1996-04-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA. J.Mol.Biol., 249, 1995
2HLI	Solution structure of Crotonaldehyde-Derived N2-[3-Oxo-1(S)-methyl-propyl]-dG DNA Adduct in the 5'-CpG-3' Sequence Descriptor: DNA dodecamer, DNA dodecamer with S-crotonaldehyde adduct Authors: Cho, Y.-J, Wang, H, Kozekov, I.D, Kurtz, A.J, Jacob, J, Voehler, M, Smith, J, Harris, T.M, Rizzo, C.J, Stone, M.P. Deposit date: 2006-07-07 Release date: 2006-09-19 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Orientation of the Crotonaldehyde-Derived N(2)-[3-Oxo-1(S)-methyl-propyl]-dG DNA Adduct Hinders Interstrand Cross-Link Formation in the 5'-CpG-3' Sequence Chem.Res.Toxicol., 19, 2006
3QK4	Crystal structure of d(CGCGGGTACCCGCG)2 as A-DNA duplex Descriptor: DNA (5'-D(*CP*GP*CP*GP*GP*GP*TP*AP*CP*CP*CP*GP*CP*G)-3') Authors: Venkadesh, S, Mandal, P.K, Gautham, N. Deposit date: 2011-01-31 Release date: 2011-03-02 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.6 Å) Cite: The structure of a full turn of an A-DNA duplex d(CGCGGGTACCCGCG)(2) Biochem.Biophys.Res.Commun., 407, 2011
1BUA	STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE Descriptor: DNA (5'-D(*AP*AP*AP*GP*AP*CP*IP*TP*CP*TP*T)-3'), ENDONUCLEASE ECORV Authors: Perona, J.J, Martin, A.M. Deposit date: 1998-09-03 Release date: 1998-09-09 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structural and energetic origins of indirect readout in site-specific DNA cleavage by a restriction endonuclease. Nat.Struct.Biol., 6, 1999
260D	CRYSTAL STRUCTURE OF THE SELF-COMPLEMENTARY 5'-PURINE START DECAMER D(GCACGCGTGC) IN THE A-DNA CONFORMATION-PART II Descriptor: DNA (5'-D(*GP*CP*AP*CP*GP*CP*GP*TP*GP*C)-3') Authors: Ban, C, Sundaralingam, M. Deposit date: 1996-05-21 Release date: 1996-06-27 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of the self-complementary 5'-purine start decamer d(GCACGCGTGC) in the A-DNA conformation. II. Biophys.J., 71, 1996
8S9M	DNA cytosine-N4 methyltransferase (residues 79-324) from the Bdelloid rotifer Adineta vaga Descriptor: 1,2-ETHANEDIOL, DNA cytosine-N4 methyltransferase, SINEFUNGIN Authors: Zhou, J, Horton, J.R, Cheng, X. Deposit date: 2023-03-29 Release date: 2023-08-02 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.49 Å) Cite: Biochemical and structural characterization of the first-discovered metazoan DNA cytosine-N4 methyltransferase from the bdelloid rotifer Adineta vaga. J.Biol.Chem., 299, 2023
8S9N	DNA cytosine-N4 methyltransferase (residues 61-324) from the Bdelloid rotifer Adineta vaga - C2 crystal form Descriptor: 1,2-ETHANEDIOL, DNA cytosine-N4 methyltransferase, SINEFUNGIN Authors: Zhou, J, Horton, J.R, Cheng, X. Deposit date: 2023-03-29 Release date: 2023-08-02 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.89 Å) Cite: Biochemical and structural characterization of the first-discovered metazoan DNA cytosine-N4 methyltransferase from the bdelloid rotifer Adineta vaga. J.Biol.Chem., 299, 2023
8S9O	DNA cytosine-N4 methyltransferase (residues 61-324) from the Bdelloid rotifer Adineta vaga - P1 crystal form Descriptor: 1,2-ETHANEDIOL, DNA cytosine-N4 methyltransferase, SINEFUNGIN Authors: Zhou, J, Horton, J.R, Cheng, X. Deposit date: 2023-03-29 Release date: 2023-08-02 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.94 Å) Cite: Biochemical and structural characterization of the first-discovered metazoan DNA cytosine-N4 methyltransferase from the bdelloid rotifer Adineta vaga. J.Biol.Chem., 299, 2023
7XLW	Crystal structure of a NIR-emitting DNA-stabilized Ag16 nanocluster (G7I/G9I mutant) Descriptor: DNA (5'-D(*CP*AP*CP*CP*TP*AP*IP*CP*IP*A)-3'), SILVER ION Authors: Kondo, J, Cerretani, C, Vosch, T. Deposit date: 2022-04-23 Release date: 2022-07-13 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.89 Å) Cite: The effect of inosine on the spectroscopic properties and crystal structure of a NIR-emitting DNA-stabilized silver nanocluster. Nanoscale Adv, 4, 2022
1QBJ	CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX Descriptor: DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3'), PROTEIN (DOUBLE-STRANDED RNA SPECIFIC ADENOSINE DEAMINASE (ADAR1)) Authors: Schwartz, T, Rould, M.A, Rich, A. Deposit date: 1999-04-22 Release date: 1999-07-02 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA. Science, 284, 1999
3PTA	Crystal structure of human DNMT1(646-1600) in complex with DNA Descriptor: DNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3'), DNA (cytosine-5)-methyltransferase 1, ... Authors: Song, J, Patel, D.J. Deposit date: 2010-12-02 Release date: 2010-12-29 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structure of DNMT1-DNA complex reveals a role for autoinhibition in maintenance DNA methylation. Science, 331, 2011
7Y01	Crystal structure of ZmMCM10 in complex with 16nt ssDNA at 2.8. Angstrom resolution Descriptor: DNA (5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*C)-3'), MCM10 minichromosome maintenance deficient 10, ZINC ION Authors: Du, X, Du, J. Deposit date: 2022-06-03 Release date: 2023-04-12 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.8 Å) Cite: AtMCM10 promotes DNA replication-coupled nucleosome assembly in Arabidopsis. J Integr Plant Biol, 65, 2023
2BOO	The crystal structure of Uracil-DNA N-Glycosylase (UNG) from Deinococcus radiodurans. Descriptor: NITRATE ION, URACIL-DNA GLYCOSYLASE Authors: Leiros, I, Moe, E, Smalas, A.O, McSweeney, S. Deposit date: 2005-04-13 Release date: 2005-07-27 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structure of the Uracil-DNA N-Glycosylase (Ung) from Deinococcus Radiodurans. Acta Crystallogr.,Sect.D, 61, 2005
151D	DIVERSITY OF WATER RING SIZE AT DNA INTERFACES: HYDRATION AND DYNAMICS OF DNA-ANTHRACYCLINE COMPLEXES Descriptor: DNA (5'-D(*CP*GP*AP*TP*CP*G)-3'), DOXORUBICIN Authors: Lipscomb, L.A, Peek, M.E, Zhou, F.X, Bertrand, J.A, VanDerveer, D, Williams, L.D. Deposit date: 1993-12-13 Release date: 1994-05-04 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Water ring structure at DNA interfaces: hydration and dynamics of DNA-anthracycline complexes. Biochemistry, 33, 1994
1D27	HIGH-RESOLUTION STRUCTURE OF A MUTAGENIC LESION IN DNA Descriptor: DNA (5'-D(*CP*GP*CP*(6OG)P*AP*AP*TP*TP*TP*GP*CP*G)-3') Authors: Leonard, G.A, Thomson, J, Watson, W.P, Brown, T. Deposit date: 1991-04-22 Release date: 1992-04-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: High-resolution structure of a mutagenic lesion in DNA. Proc.Natl.Acad.Sci.USA, 87, 1990
160D	HIGH RESOLUTION CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCCGGCCGGG): NOVEL INTERMOLECULAR BASE-PAIRED G*(G.C) TRIPLETS Descriptor: DNA (5'-D(*CP*CP*CP*GP*GP*CP*CP*GP*GP*G)-3') Authors: Ramakrishnan, B, Sundaralingam, M. Deposit date: 1994-02-10 Release date: 1994-05-18 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.65 Å) Cite: High resolution crystal structure of the A-DNA decamer d(CCCGGCCGGG). Novel intermolecular base-paired G*(G.C) triplets. J.Mol.Biol., 231, 1993
1EOO	ECORV BOUND TO COGNATE DNA Descriptor: DNA (5'-D(*GP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*C)-3'), TYPE II RESTRICTION ENZYME ECORV Authors: Horton, N.C, Perona, J.J. Deposit date: 2000-03-23 Release date: 2000-04-04 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.16 Å) Cite: Crystallographic snapshots along a protein-induced DNA-bending pathway. Proc.Natl.Acad.Sci.USA, 97, 2000
1PJI	Crystal structure of wild type Lactococcus lactis FPG complexed to a 1,3 propanediol containing DNA Descriptor: DNA (5'-D(*CP*TP*CP*TP*TP*TP*(PDI)P*TP*TP*TP*CP*TP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'), Formamidopyrimidine-DNA glycosylase, ... Authors: Pereira, K, Serre, L, Zelwer, C, Castaing, B. Deposit date: 2003-06-03 Release date: 2004-08-03 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA. Nucleic Acids Res., 33, 2005

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