PDB: 184427 resultsInfo pagesStatus searchChemie searchBIRD

---

7XOA	SARS-CoV-2 Omicron BA.2 Variant Spike Trimer with one mouse ACE2 Bound Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, Spike glycoprotein, ... Authors: Xu, Y, Wu, C, Liu, H, Yin, W, Xu, H.E. Deposit date: 2022-05-01 Release date: 2022-06-15 Last modified: 2022-07-13 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural and biochemical mechanism for increased infectivity and immune evasion of Omicron BA.2 variant compared to BA.1 and their possible mouse origins. Cell Res., 32, 2022
7XII	Crystal structure of the aminopropyltransferase, SpeE from hyperthermophilic crenarchaeon, Pyrobaculum calidifontis in complex with 5'-methylthioadenosine (MTA) & aminopropylagmatine Descriptor: 1-{4-[(3-aminopropyl)amino]butyl}guanidine, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-DEOXY-5'-METHYLTHIOADENOSINE, ... Authors: Mizohata, E, Yasuda, Y. Deposit date: 2022-04-13 Release date: 2022-06-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Substrate Specificity of an Aminopropyltransferase and the Biosynthesis Pathway of Polyamines in the Hyperthermophilic Crenarchaeon Pyrobaculum calidifontis. Catalysts, 12, 2022
7XO9	SARS-CoV-2 Omicron BA.2 Variant RBD complexed with human ACE2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, CHLORIDE ION, ... Authors: Xu, Y, Wu, C, Liu, H, Yin, W, Xu, H.E. Deposit date: 2022-05-01 Release date: 2022-06-15 Last modified: 2022-07-13 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural and biochemical mechanism for increased infectivity and immune evasion of Omicron BA.2 variant compared to BA.1 and their possible mouse origins. Cell Res., 32, 2022
7XO5	SARS-CoV-2 Omicron BA.1 Variant Spike Trimer with one mouse ACE2 Bound Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, Spike glycoprotein, ... Authors: Xu, Y, Wu, C, Liu, H, Yin, W, Xu, H.E. Deposit date: 2022-05-01 Release date: 2022-06-15 Last modified: 2022-07-13 Method: ELECTRON MICROSCOPY (3.13 Å) Cite: Structural and biochemical mechanism for increased infectivity and immune evasion of Omicron BA.2 variant compared to BA.1 and their possible mouse origins. Cell Res., 32, 2022
1FRF	CRYSTAL STRUCTURE OF THE NI-FE HYDROGENASE FROM DESULFOVIBRIO FRUCTOSOVORANS Descriptor: FE (III) ION, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ... Authors: Montet, Y, Volbeda, A, Piras, C, Hatchikian, E.C, Frey, M, Fontecilla, J.C. Deposit date: 1998-07-21 Release date: 1998-07-29 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.7 Å) Cite: 3Fe-4S] to [4Fe-4S] cluster conversion in Desulfovibrio fructosovorans [NiFe] hydrogenase by site-directed mutagenesis Proc.Natl.Acad.Sci.USA, 95, 1998
1JF9	Crystal Structure of selenocysteine lyase Descriptor: PYRIDOXAL-5'-PHOSPHATE, SELENOCYSTEINE LYASE Authors: Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC) Deposit date: 2001-06-20 Release date: 2001-07-04 Last modified: 2021-02-03 Method: X-RAY DIFFRACTION (2 Å) Cite: Analysis of the E. coli NifS CsdB Protein at 2.0A Reveals the Structural Basis for Perselenide and Persulfide Intermediate Formation J.Mol.Biol., 315, 2002
7XOD	SARS-CoV-2 Omicron BA.2 Variant Spike Trimer with three JMB2002 Fab Bound Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of JMB2002 Fab, ... Authors: Xu, Y, Wu, C, Liu, H, Yin, W, Xu, H.E. Deposit date: 2022-05-01 Release date: 2022-06-15 Last modified: 2022-07-13 Method: ELECTRON MICROSCOPY (3.27 Å) Cite: Structural and biochemical mechanism for increased infectivity and immune evasion of Omicron BA.2 variant compared to BA.1 and their possible mouse origins. Cell Res., 32, 2022
7XO6	SARS-CoV-2 Omicron BA.1 Variant RBD with mouse ACE2 Bound Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ... Authors: Xu, Y, Wu, C, Liu, H, Yin, W, Xu, H.E. Deposit date: 2022-05-01 Release date: 2022-06-15 Last modified: 2022-07-13 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Structural and biochemical mechanism for increased infectivity and immune evasion of Omicron BA.2 variant compared to BA.1 and their possible mouse origins. Cell Res., 32, 2022
7XIH	Crystal structure of the aminopropyltransferase, SpeE from hyperthermophilic crenarchaeon, Pyrobaculum calidifontis in complex with 5'-methylthioadenosine (MTA) and spermidine Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, Polyamine aminopropyltransferase, SPERMIDINE Authors: Mizohata, E, Yasuda, Y. Deposit date: 2022-04-13 Release date: 2022-06-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Substrate Specificity of an Aminopropyltransferase and the Biosynthesis Pathway of Polyamines in the Hyperthermophilic Crenarchaeon Pyrobaculum calidifontis. Catalysts, 12, 2022
7XOC	SARS-CoV-2 Omicron BA.2 Variant RBD complexed with mouse ACE2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ... Authors: Xu, Y, Wu, C, Liu, H, Yin, W, Xu, H.E. Deposit date: 2022-05-01 Release date: 2022-06-15 Last modified: 2022-07-13 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural and biochemical mechanism for increased infectivity and immune evasion of Omicron BA.2 variant compared to BA.1 and their possible mouse origins. Cell Res., 32, 2022
6BGK	Caspase-3 Mutant- D9A,D28A,T152D Descriptor: ACE-ASP-GLU-VAL-ASP-0QE, AZIDE ION, CHLORIDE ION, ... Authors: Thomas, M.E, Grinshpon, R, Swartz, P.D, Clark, A.C. Deposit date: 2017-10-28 Release date: 2018-02-21 Last modified: 2018-04-25 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Modifications to a common phosphorylation network provide individualized control in caspases. J. Biol. Chem., 293, 2018
5DFC	Crystal structure of BRD2(BD2) W370F mutant with ligand I-BET 762 bound Descriptor: 2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-N-ethylacetamide, Bromodomain-containing protein 2, GLYCEROL, ... Authors: Tallant, C, Baud, M, Lin-Shiao, E, Chirgadze, D.Y, Ciulli, A. Deposit date: 2015-08-26 Release date: 2015-11-11 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.5 Å) Cite: New Synthetic Routes to Triazolo-benzodiazepine Analogues: Expanding the Scope of the Bump-and-Hole Approach for Selective Bromo and Extra-Terminal (BET) Bromodomain Inhibition. J.Med.Chem., 59, 2016
1O2I	Elaborate Manifold of Short Hydrogen Bond Arrays Mediating Binding of Active Site-Directed Serine Protease Inhibitors Descriptor: 2-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-6-(CYCLOPENTYLOXY)BENZENOLATE, BETA-TRYPSIN, CALCIUM ION, ... Authors: Katz, B.A, Elrod, K, Verner, E, Mackman, R.L, Luong, C, Shrader, W, Sendzik, M, Spencer, J.R, Sprengeler, P.A, Kolesnikov, A, Tai, W.F, Hui, H, Breitenbucher, G, Allen, D, Janc, J. Deposit date: 2003-03-06 Release date: 2003-05-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Elaborate Manifold of Short Hydrogen Bond Arrays Mediating Binding of Active Site-Directed Serine Protease Inhibitors J.Mol.Biol., 329, 2003
1O2S	Elaborate Manifold of Short Hydrogen Bond Arrays Mediating Binding of Active Site-Directed Serine Protease Inhibitors Descriptor: 2-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}BENZENOLATE, BETA-TRYPSIN, CALCIUM ION, ... Authors: Katz, B.A, Elrod, K, Verner, E, Mackman, R.L, Luong, C, Shrader, W.D, Sendzik, M, Spencer, J.R, Sprengeler, P.A, Kolesnikov, A, Tai, V.W, Hui, H.C, Breitenbucher, J.G, Allen, D, Janc, J.W. Deposit date: 2003-03-06 Release date: 2003-09-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Elaborate manifold of short hydrogen bond arrays mediating binding of active site-directed serine protease inhibitors. J.Mol.Biol., 329, 2003
1O2N	Elaborate Manifold of Short Hydrogen Bond Arrays Mediating Binding of Active Site-Directed Serine Protease Inhibitors Descriptor: 3-{5-[AMINO(IMINIO)METHYL]-6-CHLORO-1H-BENZIMIDAZOL-2-YL}-1,1'-BIPHENYL-2-OLATE, BETA-TRYPSIN, CALCIUM ION, ... Authors: Katz, B.A, Elrod, K, Verner, E, Mackman, R.L, Luong, C, Shrader, W, Sendzik, M, Spencer, J.R, Sprengeler, P.A, Kolesnikov, A, Tai, W.F, Hui, H, Breitenbucher, G, Allen, D, Janc, J. Deposit date: 2003-03-06 Release date: 2003-05-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Elaborate Manifold of Short Hydrogen Bond Arrays Mediating Binding of Active Site-Directed Serine Protease Inhibitors J.Mol.Biol., 329, 2003
5E5Y	Quasi-racemic snakin-1 in P1 before radiation damage Descriptor: 1,2-ETHANEDIOL, D- snakin-1, FORMIC ACID, ... Authors: Yeung, H, Squire, C.J, Yosaatmadja, Y, Panjikar, S, Baker, E.N, Harris, P.W.R, Brimble, M.A. Deposit date: 2015-10-09 Release date: 2016-05-18 Last modified: 2016-07-20 Method: X-RAY DIFFRACTION (1.506 Å) Cite: Radiation Damage and Racemic Protein Crystallography Reveal the Unique Structure of the GASA/Snakin Protein Superfamily. Angew.Chem.Int.Ed.Engl., 55, 2016
1O2X	Elaborate Manifold of Short Hydrogen Bond Arrays Mediating Binding of Active Site-Directed Serine Protease Inhibitors Descriptor: 2-(3-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-5-BROMO-4-OXIDOPHENYL)SUCCINATE, BETA-TRYPSIN, CALCIUM ION, ... Authors: Katz, B.A, Elrod, K, Verner, E, Mackman, R.L, Luong, C, Shrader, W.D, Sendzik, M, Spencer, J.R, Sprengeler, P.A, Kolesnikov, A, Tai, V.W, Hui, H.C, Breitenbucher, J.G, Allen, D, Janc, J.W. Deposit date: 2003-03-06 Release date: 2003-09-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.46 Å) Cite: Elaborate manifold of short hydrogen bond arrays mediating binding of active site-directed serine protease inhibitors. J.Mol.Biol., 329, 2003
1O33	Elaborate Manifold of Short Hydrogen Bond Arrays Mediating Binding of Active Site-Directed Serine Protease Inhibitors Descriptor: 2-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}PYRIDIN-3-OLATE, BETA-TRYPSIN, CALCIUM ION, ... Authors: Katz, B.A, Elrod, K, Verner, E, Mackman, R.L, Luong, C, Shrader, W.D, Sendzik, M, Spencer, J.R, Sprengeler, P.A, Kolesnikov, A, Tai, V.W, Hui, H.C, Breitenbucher, J.G, Allen, D, Janc, J.W. Deposit date: 2003-03-06 Release date: 2003-09-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.46 Å) Cite: Elaborate manifold of short hydrogen bond arrays mediating binding of active site-directed serine protease inhibitors. J.Mol.Biol., 329, 2003
1O3H	Elaborate Manifold of Short Hydrogen Bond Arrays Mediating Binding of Active Site-Directed Serine Protease Inhibitors Descriptor: 2-{5-[AMINO(IMINIO)METHYL]-1H-INDOL-2-YL}-6-BROMO-4-METHYLBENZENOLATE, BETA-TRYPSIN, CALCIUM ION, ... Authors: Katz, B.A, Elrod, K, Verner, E, Mackman, R.L, Luong, C, Shrader, W.D, Sendzik, M, Spencer, J.R, Sprengeler, P.A, Kolesnikov, A, Tai, V.W, Hui, H.C, Breitenbucher, J.G, Allen, D, Janc, J.W. Deposit date: 2003-03-06 Release date: 2003-09-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.53 Å) Cite: Elaborate manifold of short hydrogen bond arrays mediating binding of active site-directed serine protease inhibitors. J.Mol.Biol., 329, 2003
5YCF	Crystal structure of Xiphophorus maculatus adenylate kinase Descriptor: Adenylate kinase isoenzyme 1, BIS(ADENOSINE)-5'-PENTAPHOSPHATE Authors: Bae, E, Kim, J, Moon, S. Deposit date: 2017-09-07 Release date: 2018-09-12 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.938 Å) Cite: Crystal structure of Xiphophorus maculatus adenylate kinase To Be Published
1RAP	THE STRUCTURE AND FUNCTION OF OMEGA LOOP A REPLACEMENTS IN CYTOCHROME C Descriptor: PROTOPORPHYRIN IX CONTAINING FE, REP A2 ISO-1-CYTOCHROME C, SULFATE ION Authors: Murphy, M.E.P, Brayer, G.D. Deposit date: 1992-08-25 Release date: 1993-10-31 Last modified: 2017-11-29 Method: X-RAY DIFFRACTION (2.25 Å) Cite: The structure and function of omega loop A replacements in cytochrome c. Protein Sci., 2, 1993
4RJ2	Crystal structure of E.coli purine nucleoside phosphorylase at 0.99 A resolution Descriptor: GLYCEROL, Purine nucleoside phosphorylase DeoD-type Authors: Timofeev, V.I, Abramchik, Y.A, Esipov, R.S, Kuranova, I.P. Deposit date: 2014-10-08 Release date: 2014-12-03 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (0.99 Å) Cite: Crystal structure of E.coli purine nucleoside phosphorylase at 0.99 A resolution To be Published
1O38	Elaborate Manifold of Short Hydrogen Bond Arrays Mediating Binding of Active Site-Directed Serine Protease Inhibitors Descriptor: 5-(2-AMINOETHYL)-3-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-1,1'-BIPHENYL-2-OLATE, BETA-TRYPSIN, CALCIUM ION, ... Authors: Katz, B.A, Elrod, K, Verner, E, Mackman, R.L, Luong, C, Shrader, W.D, Sendzik, M, Spencer, J.R, Sprengeler, P.A, Kolesnikov, A, Tai, V.W, Hui, H.C, Breitenbucher, J.G, Allen, D, Janc, J.W. Deposit date: 2003-03-06 Release date: 2003-09-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.38 Å) Cite: Elaborate manifold of short hydrogen bond arrays mediating binding of active site-directed serine protease inhibitors. J.Mol.Biol., 329, 2003
1O3G	Elaborate Manifold of Short Hydrogen Bond Arrays Mediating Binding of Active Site-Directed Serine Protease Inhibitors Descriptor: 3-{5-[AMINO(IMINIO)METHYL]-1H-INDOL-2-YL}-1,1'-BIPHENYL-2-OLATE, BETA-TRYPSIN, CALCIUM ION, ... Authors: Katz, B.A, Elrod, K, Verner, E, Mackman, R.L, Luong, C, Shrader, W.D, Sendzik, M, Spencer, J.R, Sprengeler, P.A, Kolesnikov, A, Tai, V.W, Hui, H.C, Breitenbucher, J.G, Allen, D, Janc, J.W. Deposit date: 2003-03-06 Release date: 2003-09-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Elaborate manifold of short hydrogen bond arrays mediating binding of active site-directed serine protease inhibitors. J.Mol.Biol., 329, 2003
167D	THE CRYSTAL STRUCTURE OF C-C-A-T-T-A-A-T-G-G: IMPLICATIONS FOR BENDING OF B-DNA AT T-A STEPS Descriptor: DNA (5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3') Authors: Goodsell, D.S, Kaczor-Grzeskowiak, M, Dickerson, R.E. Deposit date: 1994-04-04 Release date: 1994-08-31 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps. J.Mol.Biol., 239, 1994

<993994995996997998999100010011002100310041005100610071008>