4WAV
| Crystal Structure of Haloquadratum walsbyi bacteriorhodopsin mutant D93N | Descriptor: | Bacteriorhodopsin-I, RETINAL, [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate | Authors: | Wang, A.H.J, Hsu, M.F, Yang, C.S, Fu, H.Y. | Deposit date: | 2014-09-02 | Release date: | 2015-09-23 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of an acid-tolerant light-driven proton pump at 1.85 Angstroms resolution To be published
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4MD2
| Ground state of bacteriorhodopsin from Halobacterium salinarum | Descriptor: | (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ... | Authors: | Borshchevskiy, V, Erofeev, I, Round, E, Weik, M, Ishchenko, A, Gushchin, I, Mishin, A, Bueldt, G, Gordeliy, V. | Deposit date: | 2013-08-22 | Release date: | 2014-10-08 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (1.73 Å) | Cite: | Low-dose X-ray radiation induces structural alterations in proteins. Acta Crystallogr.,Sect.D, 70, 2014
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8JH0
| Crystal structure of the light-driven sodium pump IaNaR | Descriptor: | RETINAL, Xanthorhodopsin | Authors: | Hashimoto, T, Kato, K, Tanaka, Y, Yao, M, Kikukawa, T. | Deposit date: | 2023-05-22 | Release date: | 2023-11-01 | Last modified: | 2023-12-06 | Method: | X-RAY DIFFRACTION (2.79 Å) | Cite: | Multistep conformational changes leading to the gate opening of light-driven sodium pump rhodopsin. J.Biol.Chem., 299, 2023
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4TL3
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8I2Z
| Cryo-EM structure of the zeaxanthin-bound kin4B8 | Descriptor: | RETINAL, Xanthorhodopsin, Zeaxanthin | Authors: | Murakoshi, S, Chazan, A, Shihoya, W, Beja, O, Nureki, O. | Deposit date: | 2023-01-15 | Release date: | 2023-03-29 | Last modified: | 2023-04-19 | Method: | ELECTRON MICROSCOPY (2 Å) | Cite: | Phototrophy by antenna-containing rhodopsin pumps in aquatic environments. Nature, 615, 2023
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7L1E
| The Crystal Structure of Bromide-Bound GtACR1 | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Anion channelrhodopsin-1, BROMIDE ION, ... | Authors: | Li, H, Huang, C.Y, Wang, M, Spudich, J.L, Zheng, L. | Deposit date: | 2020-12-14 | Release date: | 2021-05-26 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | The crystal structure of bromide-bound Gt ACR1 reveals a pre-activated state in the transmembrane anion tunnel. Elife, 10, 2021
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8ZAN
| ExoChR2 channelrhodopsin | Descriptor: | Archaeal-type opsin 2, RETINAL | Authors: | Zhang, M.F. | Deposit date: | 2024-04-25 | Release date: | 2024-09-04 | Method: | ELECTRON MICROSCOPY (2.4 Å) | Cite: | Channelrhodopsins with distinct chromophores and binding patterns. Nat Commun, 15, 2024
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8ZAM
| EndoChR2 channelrhodopsin | Descriptor: | (1S)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, Archaeal-type opsin 2 | Authors: | Zhang, M.F. | Deposit date: | 2024-04-25 | Release date: | 2024-09-11 | Method: | ELECTRON MICROSCOPY (2.5 Å) | Cite: | Channelrhodopsins with distinct chromophores and binding patterns. Nat Commun, 15, 2024
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1VJM
| Deformation of helix C in the low-temperature L-intermediate of bacteriorhodopsin | Descriptor: | Bacteriorhodopsin, RETINAL | Authors: | Edman, K, Royant, A, Larsson, G, Jacobson, F, Taylor, T, van der Spoel, D, Landau, E.M, Pebay-Peyroula, E, Neutze, R. | Deposit date: | 2004-03-12 | Release date: | 2004-04-06 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Deformation of helix C in the low temperature L-intermediate of bacteriorhodopsin. J.Biol.Chem., 279, 2004
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1VGO
| Crystal Structure of Archaerhodopsin-2 | Descriptor: | Archaerhodopsin 2, RETINAL, SULFATE ION, ... | Authors: | Yoshimura, K, Enami, N, Murakami, M, Okumura, H, Ihara, K, Kouyama, T. | Deposit date: | 2004-04-28 | Release date: | 2005-10-04 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal structures of archaerhodopsin-1 and -2: Common structural motif in archaeal light-driven proton pumps J.Mol.Biol., 358, 2006
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2WJL
| Bacteriorhodopsin mutant E194D | Descriptor: | Bacteriorhodopsin, RETINAL | Authors: | Potschies, M, Wolf, S, Freier, E, Hofmann, E, Gerwert, K. | Deposit date: | 2009-05-27 | Release date: | 2010-08-25 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Directional proton transfer in membrane proteins achieved through protonated protein-bound water molecules: a proton diode. Angew. Chem. Int. Ed. Engl., 49, 2010
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6NWD
| X-ray Crystallographic structure of Gloeobacter rhodopsin | Descriptor: | 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, DECANE, DODECANE, ... | Authors: | Ernst, O.P, Morizumi, T, Ou, W.L. | Deposit date: | 2019-02-06 | Release date: | 2019-08-14 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | X-ray Crystallographic Structure and Oligomerization of Gloeobacter Rhodopsin. Sci Rep, 9, 2019
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6LM1
| The crystal structure of cyanorhodopsin (CyR) N4075R from cyanobacteria Tolypothrix sp. NIES-4075 | Descriptor: | DECANE, DODECANE, HEXADECANE, ... | Authors: | Hosaka, T, Kimura-Someya, T, Shirouzu, M. | Deposit date: | 2019-12-24 | Release date: | 2020-10-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | A unique clade of light-driven proton-pumping rhodopsins evolved in the cyanobacterial lineage. Sci Rep, 10, 2020
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2WJK
| Bacteriorhodopsin mutant E204D | Descriptor: | 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, Bacteriorhodopsin, RETINAL | Authors: | Potschies, M, Hofmann, E, Gerwert, K. | Deposit date: | 2009-05-27 | Release date: | 2010-08-25 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Directional proton transfer in membrane proteins achieved through protonated protein-bound water molecules: a proton diode. Angew. Chem. Int. Ed. Engl., 49, 2010
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3DDL
| Crystallographic Structure of Xanthorhodopsin, a Light-Driven Ion Pump with Dual Chromophore | Descriptor: | 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, RETINAL, ... | Authors: | Stagno, J, Luecke, H, Schobert, B, Lanyi, J.K, Imasheva, E.S, Wang, J.M, Balashov, S.P. | Deposit date: | 2008-06-05 | Release date: | 2008-10-14 | Last modified: | 2016-06-08 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore. Proc.Natl.Acad.Sci.USA, 105, 2008
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6AB9
| The crystal structure of the relaxed state of Nonlabens marinus Rhodopsin 3 | Descriptor: | CHLORIDE ION, Chloride pumping rhodopsin, OLEIC ACID, ... | Authors: | Yun, J.-H, Ohki, M, Park, J.-H, Jin, Z, Lee, W, Liu, H, Tame, J.R.H, Shibayama, N, Park, S.-Y. | Deposit date: | 2018-07-20 | Release date: | 2019-07-31 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | The pumping mechanism of NM-R3, a light-driven cyanobacterial chloride importer in the rhodopsin family To Be Published
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6ABA
| The crystal structure of the photoactivated state of Nonlabens marinus Rhodopsin 3 | Descriptor: | CHLORIDE ION, Chloride pumping rhodopsin, OLEIC ACID, ... | Authors: | Yun, J.-H, Ohki, M, Park, J.-H, Jin, Z, Lee, W, Liu, H, Tame, J.R.H, Shibayama, N, Park, S.-Y. | Deposit date: | 2018-07-20 | Release date: | 2019-07-31 | Last modified: | 2024-10-09 | Method: | X-RAY DIFFRACTION (1.797 Å) | Cite: | The pumping mechanism of NM-R3, a light-driven marine bacterial chloride importer in the rhodopsin family To Be Published
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7XJC
| Crystal structure of bacteriorhodopsin in the ground and K states after green laser irradiation | Descriptor: | 2,10,23-TRIMETHYL-TETRACOSANE, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ... | Authors: | Taguchi, S, Niwa, S, Takeda, K. | Deposit date: | 2022-04-16 | Release date: | 2023-03-01 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin Commun Biol, 6, 2023
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7XJE
| Crystal structure of bacteriorhodopsin in the K state refined against the extrapolated dataset | Descriptor: | 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, RETINAL | Authors: | Taguchi, S, Niwa, S, Takeda, K. | Deposit date: | 2022-04-16 | Release date: | 2023-03-01 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin Commun Biol, 6, 2023
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7XJD
| Crystal structure of bacteriorhodopsin in the ground state by red laser irradiation | Descriptor: | 2,10,23-TRIMETHYL-TETRACOSANE, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ... | Authors: | Taguchi, S, Niwa, S, Takeda, K. | Deposit date: | 2022-04-16 | Release date: | 2023-03-22 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin. Commun Biol, 6, 2023
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3MBV
| Structure of bacterirhodopsin crystallized in betta-XylOC(16+4) meso phase | Descriptor: | (3R,7R,11R)-3,7,11,15-tetramethylhexadecyl alpha-D-ribopyranoside, Bacteriorhodopsin, RETINAL | Authors: | Borshchevskiy, V, Moiseeva, E, Kuklin, A, Bueldt, G, Hato, M, Gordeliy, V. | Deposit date: | 2010-03-26 | Release date: | 2010-11-03 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Isoprenoid-chained lipid beta-XylOC16+4 A novel molecule for in meso membrane protein crystallization J.Cryst.Growth, 312, 2010
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3COC
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3COD
| Crystal Structure of T90A/D115A mutant of Bacteriorhodopsin | Descriptor: | Bacteriorhodopsin, RETINAL | Authors: | Joh, N.H, Min, A, Faham, S, Bowie, J.U. | Deposit date: | 2008-03-27 | Release date: | 2008-04-08 | Last modified: | 2021-10-20 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Modest stabilization by most hydrogen-bonded side-chain interactions in membrane proteins. Nature, 453, 2008
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6CSM
| Crystal structure of the natural light-gated anion channel GtACR1 | Descriptor: | GtACR1, OLEIC ACID, RETINAL | Authors: | Kato, H.E, Kim, Y, Yamashita, K, Kobilka, B.K, Deisseroth, K. | Deposit date: | 2018-03-21 | Release date: | 2018-09-05 | Last modified: | 2023-10-04 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Structural mechanisms of selectivity and gating in anion channelrhodopsins. Nature, 561, 2018
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4FPD
| Deprotonation of D96 in bacteriorhodopsin opens the proton uptake pathway | Descriptor: | 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, Bacteriorhodopsin, CHLORIDE ION, ... | Authors: | Wang, T, Sessions, A.O, Lunde, C.S, Rouani, S, Glaeser, R.M, Facciotti, M.T, Duan, Y. | Deposit date: | 2012-06-22 | Release date: | 2013-02-27 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.65 Å) | Cite: | Deprotonation of d96 in bacteriorhodopsin opens the proton uptake pathway. Structure, 21, 2013
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