PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

---

8TFU	Structure of Red beta C-terminal domain in complex with SSB C-terminal peptide, Form 1 Descriptor: Plasmid-derived single-stranded DNA-binding protein, Recombination protein bet Authors: Bell, C.E. Deposit date: 2023-07-11 Release date: 2024-03-13 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.482 Å) Cite: Structural Basis for the Interaction of Red beta Single-Strand Annealing Protein with Escherichia coli Single-Stranded DNA-Binding Protein. J.Mol.Biol., 436, 2024
8TGC	Structure of Red beta C-terminal domain in complex with SSB C-terminal peptide, Form 4 Descriptor: Plasmid-derived single-stranded DNA-binding protein, Recombination protein bet Authors: Bell, C.E. Deposit date: 2023-07-12 Release date: 2024-03-13 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.484 Å) Cite: Structural Basis for the Interaction of Red beta Single-Strand Annealing Protein with Escherichia coli Single-Stranded DNA-Binding Protein. J.Mol.Biol., 436, 2024
8TG7	Structure of Red beta C-terminal domain in complex with SSB C-terminal peptide, Form 2 Descriptor: Plasmid-derived single-stranded DNA-binding protein, Recombination protein bet Authors: Bell, C.E. Deposit date: 2023-07-12 Release date: 2024-03-13 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.775 Å) Cite: Structural Basis for the Interaction of Red beta Single-Strand Annealing Protein with Escherichia coli Single-Stranded DNA-Binding Protein. J.Mol.Biol., 436, 2024
1PH2	CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTG Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*G)-3', 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3', CHLORIDE ION, ... Authors: Theobald, D.L, Schultz, S.C. Deposit date: 2003-05-29 Release date: 2003-06-17 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes Embo J., 22, 2003
1PH3	CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGTG Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3', 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*TP*G)-3', SODIUM ION, ... Authors: Theobald, D.L, Schultz, S.C. Deposit date: 2003-05-29 Release date: 2003-06-17 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes Embo J., 22, 2003
1PH4	CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGCG Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*CP*G)-3', 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3', CHLORIDE ION, ... Authors: Theobald, D.L, Schultz, S.C. Deposit date: 2003-05-29 Release date: 2003-06-17 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes Embo J., 22, 2003
1PH5	CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTG(3DR)GG Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*(3DR)P*GP*G)-3', 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3', CHLORIDE ION, ... Authors: Theobald, D.L, Schultz, S.C. Deposit date: 2003-05-29 Release date: 2003-06-17 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes Embo J., 22, 2003
1PH7	CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGIGG Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3', 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*IP*GP*G)-3', CHLORIDE ION, ... Authors: Theobald, D.L, Schultz, S.C. Deposit date: 2003-05-29 Release date: 2003-06-17 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes Embo J., 22, 2003
2R63	STRUCTURAL ROLE OF A BURIED SALT BRIDGE IN THE 434 REPRESSOR DNA-BINDING DOMAIN, NMR, 20 STRUCTURES Descriptor: REPRESSOR PROTEIN FROM BACTERIOPHAGE 434 Authors: Pervushin, K.V, Billeter, M, Siegal, G, Wuthrich, K. Deposit date: 1996-11-13 Release date: 1997-06-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural role of a buried salt bridge in the 434 repressor DNA-binding domain. J.Mol.Biol., 264, 1996
5YK4	Mismatch Repair Protein Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA mismatch repair protein MutS Authors: Nirwal, S, Nair, D.T. Deposit date: 2017-10-12 Release date: 2017-11-22 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.97 Å) Cite: Mechanism of formation of a toroid around DNA by the mismatch sensor protein. Nucleic Acids Res., 46, 2018
1K8G	Crystal Structure of the N-terminal domain of Oxytricha nova telomere end binding protein alpha subunit both uncomplexed and complexed with telomeric ssDNA Descriptor: 5'-D(TP*TP*GP*GP*GP*G)-3', SULFATE ION, Telomere-Binding Protein alpha Subunit Authors: Classen, S, Ruggles, J.A, Schultz, S.C. Deposit date: 2001-10-24 Release date: 2001-12-20 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of the N-terminal domain of Oxytricha nova telomere end-binding protein alpha subunit both uncomplexed and complexed with telomeric ssDNA. J.Mol.Biol., 314, 2001
1KIX	Dimeric Structure of the O. nova Telomere End Binding Protein Alpha Subunit with Bound ssDNA Descriptor: 5'-D(*T*TP*TP*TP*GP*GP*GP*G)-3', SULFATE ION, Telomere-Binding Protein alpha Subunit Authors: Peersen, O.B, Ruggles, J.A, Schultz, S.C. Deposit date: 2001-12-03 Release date: 2002-02-22 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Dimeric structure of the Oxytricha nova telomere end-binding protein alpha-subunit bound to ssDNA. Nat.Struct.Biol., 9, 2002
6T9Q	Crystal structure of the second, C-terminal repeat of the DNA-binding domain of human TImeless Descriptor: Protein timeless homolog Authors: Pellegrini, L, Holzer, S. Deposit date: 2019-10-28 Release date: 2020-07-01 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.15 Å) Cite: Timeless couples G-quadruplex detection with processing by DDX11 helicase during DNA replication. Embo J., 39, 2020
3O3G	T. maritima RNase H2 in complex with nucleic acid substrate and calcium ions Descriptor: CALCIUM ION, DNA (5'-D(*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*C)-3'), DNA/RNA (5'-D(*GP*AP*CP*AP*C)-R(P*C)-D(P*TP*GP*AP*TP*TP*C)-3'), ... Authors: Rychlik, M.P, Chon, H, Cerritelli, S.M, Klimek, P, Crouch, R.J, Nowotny, M. Deposit date: 2010-07-24 Release date: 2010-12-08 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal Structures of RNase H2 in Complex with Nucleic Acid Reveal the Mechanism of RNA-DNA Junction Recognition and Cleavage. Mol.Cell, 40, 2010
1CA5	INTERCALATION SITE OF HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SSO7D/SAC7D BOUND TO DNA Descriptor: 5'-D(*GP*TP*GP*AP*TP*CP*AP*C)-3', CHROMOSOMAL PROTEIN SAC7D Authors: Su, S, Gao, Y.-G, Robinson, H, Shriver, J.W, Wang, A.H.-J. Deposit date: 1999-02-23 Release date: 2000-02-23 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structures of the chromosomal proteins Sso7d/Sac7d bound to DNA containing T-G mismatched base-pairs J.Mol.Biol., 303, 2000
2VIH	CRYSTAL STRUCTURE OF THE IS608 TRANSPOSASE IN COMPLEX WITH Left END 26-MER DNA Descriptor: 5'-D(*AP*AP*AP*GP*CP*CP*CP*CP*TP*AP *GP*CP*TP*TP*TP*TP*AP*GP*CP*TP*AP*TP*GP*GP*GP*G)-3', TRANSPOSASE ORFA Authors: Barabas, O, Ronning, D.R, Guynet, C, Hickman, A.B, Ton-Hoang, B, Chandler, M, Dyda, F. Deposit date: 2007-12-04 Release date: 2008-02-19 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Mechanism of is200/is605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection. Cell(Cambridge,Mass.), 132, 2008
1CA6	INTERCALATION SITE OF HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SSO7D/SAC7D BOUND TO DNA Descriptor: 5'-D(*GP*TP*GP*AP*TP*CP*GP*C)-3', CHROMOSOMAL PROTEIN SAC7D Authors: Su, S, Gao, Y.-G, Robinson, H, Shriver, J.W, Wang, A.H.-J. Deposit date: 1999-02-23 Release date: 2000-02-23 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structures of the chromosomal proteins Sso7d/Sac7d bound to DNA containing T-G mismatched base-pairs J.Mol.Biol., 303, 2000
1PA6	Crystal structure of the OXYTRICHA nova telomere end-binding protein complexed with noncognate ssDNA GGGGTTTTGAGG Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*AP*GP*G)-3', 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', CHLORIDE ION, ... Authors: Theobald, D.L, Schultz, S.C. Deposit date: 2003-05-13 Release date: 2003-06-10 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Nucleotide shuffling and ssDNA recognition in Oxytricha nova telomere end-binding protein complexes Embo J., 22, 2003
3G2D	Complex of Mth0212 and a 4 bp dsDNA with 3'-overhang Descriptor: 5'-D(*CP*CP*TP*GP*UP*GP*CP*GP*AP*T)-3', 5'-D(*CP*GP*CP*G*CP*AP*GP*GP*C)-3', Exodeoxyribonuclease, ... Authors: Lakomek, K, Dickmanns, A, Ficner, R. Deposit date: 2009-01-31 Release date: 2010-03-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA J.Mol.Biol., 399, 2010
6KHY	The crystal structure of AsfvAP:AG Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA (AGCGTCACCGACGAGGC), DNA(AGCGTCACCGACGAGG), ... Authors: Chen, Y.Q, Gan, J.H. Deposit date: 2019-07-16 Release date: 2020-06-03 Method: X-RAY DIFFRACTION (3.008 Å) Cite: A unique DNA-binding mode of African swine fever virus AP endonuclease. Cell Discov, 6, 2020
3G4T	Mth0212 (WT) in complex with a 7bp dsDNA Descriptor: 5'-D(*CP*G*TP*AP*CP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*(UPS)P*TP*AP*CP*G)-3', Exodeoxyribonuclease, ... Authors: Lakomek, K, Dickmanns, A, Ficner, R. Deposit date: 2009-02-04 Release date: 2010-03-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.64 Å) Cite: Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA J.Mol.Biol., 399, 2010
3G3C	Mth0212 (WT) in complex with a 6bp dsDNA containing a single one nucleotide long 3'-overhang Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 5'-D(*CP*GP*TP*AP*(UPS)P*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*TP*AP*CP*G)-3', ... Authors: Lakomek, K, Dickmanns, A, Ficner, R. Deposit date: 2009-02-02 Release date: 2010-03-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.04 Å) Cite: Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA J.Mol.Biol., 399, 2010
3G38	The catalytically inactive mutant Mth0212 (D151N) in complex with an 8 bp dsDNA Descriptor: 5'-D(*CP*CP*TP*GP*UP*GP*CP*GP*AP*T)-3', 5'-D(*CP*GP*CP*GP*CP*AP*GP*GP*C)-3', Exodeoxyribonuclease, ... Authors: Lakomek, K, Dickmanns, A, Ficner, R. Deposit date: 2009-02-02 Release date: 2010-03-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.04 Å) Cite: Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA J.Mol.Biol., 399, 2010
3G00	Mth0212 in complex with a 9bp blunt end dsDNA at 1.7 Angstrom Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5'-D(*CP*GP*TP*AP*TP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*UP*TP*AP*CP*G)-3', ... Authors: Lakomek, K, Dickmanns, A, Ficner, R. Deposit date: 2009-01-27 Release date: 2010-03-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.74 Å) Cite: Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA J.Mol.Biol., 399, 2010
3G0R	Complex of Mth0212 and an 8bp dsDNA with distorted ends Descriptor: 5'-D(*CP*CP*CP*TP*GP*UP*GP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*CP*GP*CP*AP*GP*GP*GP*CP*G)-3', Exodeoxyribonuclease, ... Authors: Lakomek, K, Dickmanns, A, Ficner, R. Deposit date: 2009-01-28 Release date: 2010-03-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA J.Mol.Biol., 399, 2010

<286287288289290291292293294295296297298299300301>